Wall clock time and date at job start Tue Mar 31 2020 18:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00155 * 2 1 4 4 H 1.48496 * 109.47110 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46937 * 300.00330 * 3 2 1 6 6 H 1.48504 * 109.47110 * 60.00338 * 3 2 1 7 7 C 1.37874 * 120.00310 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00704 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99697 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47225 * 179.97438 * 9 7 2 11 11 C 1.34968 * 125.97651 * 124.98137 * 10 9 7 12 12 C 1.35239 * 107.85948 * 179.80282 * 11 10 9 13 13 C 1.40400 * 107.86865 * 0.37291 * 12 11 10 14 14 N 1.40194 * 125.97290 * 179.88873 * 13 12 11 15 15 C 1.34777 * 119.99945 * 359.43673 * 14 13 12 16 16 O 1.21593 * 119.99949 * 0.27949 * 15 14 13 17 17 N 1.34777 * 120.00128 * 180.27819 * 15 14 13 18 18 C 1.46499 * 120.00065 * 180.02562 * 17 15 14 19 19 H 1.08998 * 109.24288 * 34.45509 * 18 17 15 20 20 C 1.52815 * 109.24969 * 274.99556 * 18 17 15 21 21 C 1.53623 * 110.69964 * 185.96174 * 20 18 17 22 22 N 1.45662 * 107.79971 * 57.37732 * 21 20 18 23 23 C 1.47090 * 116.54371 * 177.30242 * 22 21 20 24 24 C 1.55196 * 103.52465 * 162.42367 * 23 22 21 25 25 C 1.54989 * 104.93344 * 336.00655 * 24 23 22 26 26 C 1.48721 * 109.34337 * 294.43932 * 22 21 20 27 27 H 1.09001 * 110.34595 * 308.88811 * 26 22 21 28 28 C 1.52254 * 107.50049 * 69.80541 * 26 22 21 29 29 N 1.31208 * 108.05535 * 359.62516 * 13 12 11 30 30 H 0.97006 * 119.99661 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.46922 * 60.00297 * 9 7 2 32 32 H 1.08998 * 109.47147 * 300.00357 * 9 7 2 33 33 H 1.08007 * 126.06490 * 0.06027 * 11 10 9 34 34 H 1.08006 * 126.06729 * 180.24532 * 12 11 10 35 35 H 0.97001 * 120.00268 * 179.71997 * 14 13 12 36 36 H 0.97000 * 119.99549 * 359.97438 * 17 15 14 37 37 H 1.08994 * 109.23100 * 306.28376 * 20 18 17 38 38 H 1.09004 * 109.22639 * 65.69287 * 20 18 17 39 39 H 1.09004 * 109.79369 * 176.94826 * 21 20 18 40 40 H 1.09002 * 109.79716 * 297.79586 * 21 20 18 41 41 H 1.08998 * 110.61335 * 280.93289 * 23 22 21 42 42 H 1.08993 * 110.61205 * 43.91545 * 23 22 21 43 43 H 1.09002 * 110.34401 * 94.86903 * 24 23 22 44 44 H 1.08999 * 110.34799 * 217.03509 * 24 23 22 45 45 H 1.08997 * 110.48737 * 116.18678 * 25 24 23 46 46 H 1.09001 * 110.48915 * 238.70179 * 25 24 23 47 47 H 1.09007 * 109.83705 * 177.57549 * 28 26 22 48 48 H 1.09001 * 109.83511 * 56.61650 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6126 -0.0018 11 6 2.2429 -4.6226 0.8927 12 6 3.2583 -5.4451 0.5444 13 6 3.8690 -4.9138 -0.6028 14 7 4.9645 -5.4645 -1.2825 15 6 5.5330 -6.6016 -0.8349 16 8 5.0925 -7.1526 0.1554 17 7 6.5898 -7.1279 -1.4851 18 6 7.2074 -8.3642 -0.9989 19 1 6.4363 -9.0098 -0.5786 20 6 8.2273 -8.0246 0.0872 21 6 9.0013 -9.2801 0.5169 22 7 9.6375 -9.8385 -0.6685 23 6 10.4860 -11.0223 -0.4631 24 6 10.6222 -11.6227 -1.8877 25 6 9.3779 -11.1114 -2.6574 26 6 8.5905 -10.3146 -1.6114 27 1 7.8829 -10.9637 -1.0956 28 6 7.8871 -9.0864 -2.1726 29 7 3.2315 -3.8149 -0.9309 30 1 -0.4850 0.8401 0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6246 -2.5571 0.8896 33 1 1.5788 -4.7531 1.7344 34 1 3.5494 -6.3491 1.0588 35 1 5.3160 -5.0249 -2.0725 36 1 6.9409 -6.6885 -2.2754 37 1 8.9287 -7.2845 -0.2978 38 1 7.7073 -7.6108 0.9512 39 1 9.7606 -9.0121 1.2517 40 1 8.3135 -10.0093 0.9450 41 1 11.4620 -10.7321 -0.0741 42 1 10.0000 -11.7312 0.2071 43 1 11.5355 -11.2656 -2.3637 44 1 10.6204 -12.7117 -1.8418 45 1 9.6784 -10.4654 -3.4823 46 1 8.7864 -11.9494 -3.0262 47 1 7.1379 -9.3909 -2.9035 48 1 8.6155 -8.4252 -2.6420 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000365647135.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:29 Heat of formation + Delta-G solvation = 59.599830 kcal Electronic energy + Delta-G solvation = -27996.457525 eV Core-core repulsion = 24088.025558 eV Total energy + Delta-G solvation = -3908.431967 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.85261 -40.34819 -39.35233 -36.18904 -34.58954 -33.59163 -33.21860 -31.99783 -30.74571 -29.33042 -29.14568 -27.37032 -26.47500 -23.59318 -23.14120 -22.30453 -21.48442 -20.94490 -20.52707 -20.18004 -19.67886 -17.94244 -16.80578 -16.55311 -16.31569 -15.88294 -15.64801 -15.52773 -15.31473 -14.85824 -14.42400 -14.29748 -14.04539 -13.92744 -13.54140 -13.28919 -13.01945 -12.77117 -12.76470 -12.32082 -12.19308 -11.92775 -11.78281 -11.72346 -11.53082 -11.41011 -11.07102 -10.96909 -10.92982 -10.86421 -10.80499 -10.37934 -10.24470 -10.04039 -9.65207 -9.45382 -9.18580 -8.80789 -8.62059 -8.06731 -7.37987 -6.22656 -4.27439 2.40954 2.70061 3.14835 3.23305 3.30781 3.37402 3.55951 3.63519 3.87396 4.10981 4.21956 4.31650 4.40531 4.52339 4.54775 4.71464 4.84060 4.87830 5.00592 5.08225 5.12514 5.14390 5.19943 5.36451 5.39528 5.46100 5.47243 5.55178 5.58776 5.62046 5.72960 5.78693 5.84482 5.89462 6.03960 6.26600 6.37787 6.52245 6.57507 6.63773 6.81491 6.90442 7.04527 7.14527 7.53512 7.71982 7.85500 8.01780 8.09854 8.63727 8.69833 8.83558 9.38143 10.86018 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.029900 B = 0.001861 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.229800 B =15043.407683 C =15292.340861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.069 0.931 9 C 0.258 3.742 10 N -0.321 5.321 11 C 0.050 3.950 12 C -0.286 4.286 13 C 0.276 3.724 14 N -0.644 5.644 15 C 0.713 3.287 16 O -0.568 6.568 17 N -0.740 5.740 18 C 0.167 3.833 19 H 0.086 0.914 20 C -0.127 4.127 21 C 0.058 3.942 22 N -0.526 5.526 23 C 0.041 3.959 24 C -0.122 4.122 25 C -0.116 4.116 26 C 0.064 3.936 27 H 0.055 0.945 28 C -0.111 4.111 29 N -0.308 5.308 30 H 0.266 0.734 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.167 0.833 34 H 0.160 0.840 35 H 0.406 0.594 36 H 0.397 0.603 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.037 0.963 41 H 0.080 0.920 42 H 0.040 0.960 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.075 0.925 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.547 -23.115 -4.002 30.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.087 0.913 9 C 0.141 3.859 10 N -0.103 5.103 11 C -0.100 4.100 12 C -0.318 4.318 13 C 0.022 3.978 14 N -0.294 5.294 15 C 0.413 3.587 16 O -0.444 6.444 17 N -0.396 5.396 18 C 0.062 3.938 19 H 0.104 0.896 20 C -0.166 4.166 21 C -0.071 4.071 22 N -0.251 5.251 23 C -0.087 4.087 24 C -0.160 4.160 25 C -0.154 4.154 26 C -0.044 4.044 27 H 0.073 0.927 28 C -0.150 4.150 29 N -0.139 5.139 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.184 0.816 34 H 0.178 0.822 35 H 0.241 0.759 36 H 0.231 0.769 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.056 0.944 41 H 0.098 0.902 42 H 0.058 0.942 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.088 0.912 47 H 0.093 0.907 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 19.122 -22.011 -4.070 29.440 hybrid contribution 0.260 0.206 0.263 0.424 sum 19.382 -21.805 -3.807 29.421 Atomic orbital electron populations 1.69930 1.06031 1.27469 1.49957 1.24948 0.94984 0.99547 0.94668 0.86280 0.80070 0.82501 0.77689 1.19575 1.20721 1.20782 1.21309 0.94043 0.89394 1.51769 0.91251 1.19734 0.85639 0.81339 0.99233 1.49043 1.23307 1.19769 1.18149 1.22552 1.00382 0.90242 0.96788 1.21505 1.02064 1.06306 1.01893 1.18785 0.90666 0.94005 0.94341 1.41402 1.31453 1.25265 1.31262 1.15653 0.79946 0.80165 0.82966 1.90858 1.64812 1.62136 1.26577 1.45116 1.33321 1.28400 1.32726 1.20861 0.94549 0.84491 0.93893 0.89616 1.22019 0.97610 0.97566 0.99393 1.21976 0.97041 0.96146 0.91888 1.63936 1.17886 1.29453 1.13786 1.22834 0.98031 0.90955 0.96880 1.22536 0.98727 0.99856 0.94894 1.22148 0.96191 0.99301 0.97780 1.22355 0.93007 0.94847 0.94229 0.92726 1.21782 0.99489 0.96496 0.97183 1.77322 1.03839 1.16392 1.16381 0.92415 0.93764 0.92547 0.81577 0.82222 0.75909 0.76944 0.90915 0.90536 0.90359 0.94442 0.90168 0.94154 0.90938 0.91424 0.90690 0.91205 0.90685 0.90099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.47 13.29 55.43 0.74 -24.73 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.91 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.53 -14.78 9.24 -34.44 -0.32 -15.09 16 8 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 9 C 0.26 6.63 6.26 -5.19 -0.03 6.59 16 10 N -0.32 -7.56 3.67 -62.56 -0.23 -7.79 16 11 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 12 C -0.29 -5.81 9.61 -39.84 -0.38 -6.19 16 13 C 0.28 5.64 8.11 -154.36 -1.25 4.39 16 14 N -0.64 -10.12 5.46 -15.51 -0.08 -10.21 16 15 C 0.71 10.50 8.49 -86.92 -0.74 9.76 16 16 O -0.57 -10.23 13.12 5.28 0.07 -10.16 16 17 N -0.74 -7.46 5.06 -58.43 -0.30 -7.76 16 18 C 0.17 1.55 2.51 -67.68 -0.17 1.38 16 19 H 0.09 0.96 7.55 -51.93 -0.39 0.57 16 20 C -0.13 -1.19 5.61 -26.50 -0.15 -1.34 16 21 C 0.06 0.47 5.87 -4.17 -0.02 0.45 16 22 N -0.53 -4.00 4.84 -224.50 -1.09 -5.08 16 23 C 0.04 0.26 6.71 -2.56 -0.02 0.24 16 24 C -0.12 -0.64 7.05 -24.52 -0.17 -0.81 16 25 C -0.12 -0.64 6.65 -25.54 -0.17 -0.81 16 26 C 0.06 0.44 2.50 -66.95 -0.17 0.28 16 27 H 0.05 0.41 7.98 -51.93 -0.41 -0.01 16 28 C -0.11 -0.77 5.11 -26.77 -0.14 -0.90 16 29 N -0.31 -7.19 12.42 31.44 0.39 -6.80 16 30 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.04 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 33 H 0.17 2.77 8.06 -52.48 -0.42 2.35 16 34 H 0.16 3.18 5.91 -52.48 -0.31 2.87 16 35 H 0.41 5.17 8.84 -40.82 -0.36 4.80 16 36 H 0.40 2.90 8.62 -40.82 -0.35 2.55 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.04 0.31 7.99 -51.93 -0.41 -0.10 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.07 0.41 8.00 -51.93 -0.42 -0.01 16 46 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 48 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 386.00 15.07 5.82 5.82 Total: -1.00 -32.95 386.00 -11.42 -44.37 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -7.70 Total: 5.49 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: -4.02 Total: 0.37 kcal Atomic # 7 Polarization: -61.80 SS G_CDS: -0.57 Total: -62.37 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.07 Total: -10.16 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.95 -11.42 -44.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365647135.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.974 kcal (2) G-P(sol) polarization free energy of solvation -32.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds