Wall clock time and date at job start Tue Mar 31 2020 18:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00155 * 2 1 4 4 H 1.48496 * 109.47110 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46937 * 300.00330 * 3 2 1 6 6 H 1.48504 * 109.47110 * 60.00338 * 3 2 1 7 7 C 1.37874 * 120.00310 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00704 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99697 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47225 * 179.97438 * 9 7 2 11 11 C 1.34968 * 125.97651 * 124.98137 * 10 9 7 12 12 C 1.35239 * 107.85948 * 179.80282 * 11 10 9 13 13 C 1.40400 * 107.86865 * 0.37291 * 12 11 10 14 14 N 1.40194 * 125.97290 * 179.88873 * 13 12 11 15 15 C 1.34777 * 119.99945 * 359.43673 * 14 13 12 16 16 O 1.21593 * 119.99949 * 0.27949 * 15 14 13 17 17 N 1.34777 * 120.00128 * 180.27819 * 15 14 13 18 18 C 1.46499 * 120.00065 * 180.02562 * 17 15 14 19 19 H 1.08998 * 109.24288 * 34.45509 * 18 17 15 20 20 C 1.52815 * 109.24969 * 274.99556 * 18 17 15 21 21 C 1.53623 * 110.69964 * 185.96174 * 20 18 17 22 22 N 1.45662 * 107.79971 * 57.37732 * 21 20 18 23 23 C 1.47090 * 116.54371 * 177.30242 * 22 21 20 24 24 C 1.55196 * 103.52465 * 162.42367 * 23 22 21 25 25 C 1.54989 * 104.93344 * 336.00655 * 24 23 22 26 26 C 1.48721 * 109.34337 * 294.43932 * 22 21 20 27 27 H 1.09001 * 110.34595 * 308.88811 * 26 22 21 28 28 C 1.52254 * 107.50049 * 69.80541 * 26 22 21 29 29 N 1.31208 * 108.05535 * 359.62516 * 13 12 11 30 30 H 0.97006 * 119.99661 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.46922 * 60.00297 * 9 7 2 32 32 H 1.08998 * 109.47147 * 300.00357 * 9 7 2 33 33 H 1.08007 * 126.06490 * 0.06027 * 11 10 9 34 34 H 1.08006 * 126.06729 * 180.24532 * 12 11 10 35 35 H 0.97001 * 120.00268 * 179.71997 * 14 13 12 36 36 H 0.97000 * 119.99549 * 359.97438 * 17 15 14 37 37 H 1.08994 * 109.23100 * 306.28376 * 20 18 17 38 38 H 1.09004 * 109.22639 * 65.69287 * 20 18 17 39 39 H 1.09004 * 109.79369 * 176.94826 * 21 20 18 40 40 H 1.09002 * 109.79716 * 297.79586 * 21 20 18 41 41 H 1.08998 * 110.61335 * 280.93289 * 23 22 21 42 42 H 1.08993 * 110.61205 * 43.91545 * 23 22 21 43 43 H 1.09002 * 110.34401 * 94.86903 * 24 23 22 44 44 H 1.08999 * 110.34799 * 217.03509 * 24 23 22 45 45 H 1.08997 * 110.48737 * 116.18678 * 25 24 23 46 46 H 1.09001 * 110.48915 * 238.70179 * 25 24 23 47 47 H 1.09007 * 109.83705 * 177.57549 * 28 26 22 48 48 H 1.09001 * 109.83511 * 56.61650 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6126 -0.0018 11 6 2.2429 -4.6226 0.8927 12 6 3.2583 -5.4451 0.5444 13 6 3.8690 -4.9138 -0.6028 14 7 4.9645 -5.4645 -1.2825 15 6 5.5330 -6.6016 -0.8349 16 8 5.0925 -7.1526 0.1554 17 7 6.5898 -7.1279 -1.4851 18 6 7.2074 -8.3642 -0.9989 19 1 6.4363 -9.0098 -0.5786 20 6 8.2273 -8.0246 0.0872 21 6 9.0013 -9.2801 0.5169 22 7 9.6375 -9.8385 -0.6685 23 6 10.4860 -11.0223 -0.4631 24 6 10.6222 -11.6227 -1.8877 25 6 9.3779 -11.1114 -2.6574 26 6 8.5905 -10.3146 -1.6114 27 1 7.8829 -10.9637 -1.0956 28 6 7.8871 -9.0864 -2.1726 29 7 3.2315 -3.8149 -0.9309 30 1 -0.4850 0.8401 0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6246 -2.5571 0.8896 33 1 1.5788 -4.7531 1.7344 34 1 3.5494 -6.3491 1.0588 35 1 5.3160 -5.0249 -2.0725 36 1 6.9409 -6.6885 -2.2754 37 1 8.9287 -7.2845 -0.2978 38 1 7.7073 -7.6108 0.9512 39 1 9.7606 -9.0121 1.2517 40 1 8.3135 -10.0093 0.9450 41 1 11.4620 -10.7321 -0.0741 42 1 10.0000 -11.7312 0.2071 43 1 11.5355 -11.2656 -2.3637 44 1 10.6204 -12.7117 -1.8418 45 1 9.6784 -10.4654 -3.4823 46 1 8.7864 -11.9494 -3.0262 47 1 7.1379 -9.3909 -2.9035 48 1 8.6155 -8.4252 -2.6420 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000365647135.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:28 Heat of formation + Delta-G solvation = 37.514536 kcal Electronic energy + Delta-G solvation = -27997.415215 eV Core-core repulsion = 24088.025558 eV Total energy + Delta-G solvation = -3909.389658 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.23571 -41.33472 -40.43386 -37.08187 -36.06918 -35.28480 -34.20406 -32.99438 -32.23844 -30.92197 -29.87775 -28.61086 -27.77526 -25.10925 -24.10680 -23.46037 -22.36034 -21.91263 -21.50679 -21.38228 -20.79457 -19.14139 -18.68705 -18.21388 -17.28442 -16.90299 -16.64401 -16.48510 -16.23322 -16.07571 -15.86483 -15.61875 -15.40905 -14.85931 -14.50045 -14.40225 -14.19978 -13.89945 -13.79268 -13.64463 -13.58205 -13.32182 -12.94192 -12.73117 -12.50456 -12.30669 -12.27392 -12.17721 -12.05206 -11.93566 -11.68108 -11.61278 -11.50589 -11.37568 -11.34016 -11.08688 -10.71900 -10.17484 -9.71463 -9.39760 -9.04352 -8.32396 -6.46480 1.08445 1.14515 1.37381 1.38784 1.52046 1.71604 2.11834 2.36361 2.42407 2.99003 3.00541 3.14150 3.54692 3.71119 3.92862 3.97215 4.02304 4.11487 4.24058 4.29092 4.33432 4.36801 4.44307 4.49574 4.70201 4.75801 4.80077 4.83615 4.88182 4.92046 4.95982 4.99212 5.02956 5.03619 5.10767 5.13480 5.15996 5.23835 5.34468 5.35787 5.54586 5.57910 5.77823 5.90145 5.97603 5.98987 6.22693 6.30362 6.64788 6.78508 7.16647 7.23494 7.45282 8.75179 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.029900 B = 0.001861 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.229800 B =15043.407683 C =15292.340861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.018 3.982 3 Si 0.972 3.028 4 H -0.275 1.275 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.546 4.546 8 H 0.052 0.948 9 C 0.272 3.728 10 N -0.345 5.345 11 C 0.056 3.944 12 C -0.293 4.293 13 C 0.285 3.715 14 N -0.637 5.637 15 C 0.712 3.288 16 O -0.601 6.601 17 N -0.717 5.717 18 C 0.168 3.832 19 H 0.066 0.934 20 C -0.121 4.121 21 C 0.063 3.937 22 N -0.532 5.532 23 C 0.037 3.963 24 C -0.119 4.119 25 C -0.113 4.113 26 C 0.062 3.938 27 H 0.047 0.953 28 C -0.101 4.101 29 N -0.348 5.348 30 H 0.272 0.728 31 H 0.022 0.978 32 H 0.059 0.941 33 H 0.200 0.800 34 H 0.166 0.834 35 H 0.421 0.579 36 H 0.414 0.586 37 H 0.074 0.926 38 H 0.051 0.949 39 H 0.082 0.918 40 H 0.032 0.968 41 H 0.083 0.917 42 H 0.039 0.961 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.085 0.915 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.297 -23.762 -4.727 32.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.182 4.182 3 Si 0.797 3.203 4 H -0.200 1.200 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.585 4.585 8 H 0.070 0.930 9 C 0.153 3.847 10 N -0.127 5.127 11 C -0.093 4.093 12 C -0.324 4.324 13 C 0.029 3.971 14 N -0.288 5.288 15 C 0.412 3.588 16 O -0.479 6.479 17 N -0.373 5.373 18 C 0.063 3.937 19 H 0.084 0.916 20 C -0.160 4.160 21 C -0.066 4.066 22 N -0.257 5.257 23 C -0.090 4.090 24 C -0.157 4.157 25 C -0.151 4.151 26 C -0.047 4.047 27 H 0.065 0.935 28 C -0.139 4.139 29 N -0.179 5.179 30 H 0.081 0.919 31 H 0.040 0.960 32 H 0.077 0.923 33 H 0.217 0.783 34 H 0.183 0.817 35 H 0.258 0.742 36 H 0.251 0.749 37 H 0.093 0.907 38 H 0.070 0.930 39 H 0.101 0.899 40 H 0.050 0.950 41 H 0.102 0.898 42 H 0.058 0.942 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.098 0.902 47 H 0.104 0.896 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 20.921 -22.687 -4.836 31.237 hybrid contribution -0.211 0.267 0.499 0.604 sum 20.710 -22.420 -4.337 30.828 Atomic orbital electron populations 1.70002 1.07187 1.28674 1.50058 1.25741 0.95856 1.02722 0.93930 0.85292 0.78378 0.78380 0.78298 1.19957 1.19816 1.19524 1.21433 0.93372 0.90990 1.52654 0.92992 1.19340 0.85692 0.81524 0.98117 1.48810 1.23944 1.20356 1.19587 1.23148 1.00505 0.88862 0.96743 1.21675 1.02188 1.06490 1.02071 1.19083 0.90869 0.92949 0.94154 1.41401 1.30384 1.25561 1.31503 1.15818 0.80557 0.79670 0.82795 1.90831 1.65998 1.62910 1.28173 1.44992 1.31575 1.28230 1.32521 1.20957 0.93990 0.83705 0.95041 0.91604 1.21919 0.97451 0.98202 0.98404 1.21887 0.96932 0.95447 0.92369 1.63955 1.18105 1.30251 1.13426 1.22912 0.97854 0.90494 0.97784 1.22542 0.98731 1.00490 0.93942 1.22155 0.96147 0.99476 0.97368 1.22408 0.92926 0.94795 0.94556 0.93494 1.21727 0.99686 0.96347 0.96130 1.77242 1.04939 1.18162 1.17562 0.91857 0.96035 0.92346 0.78275 0.81678 0.74216 0.74904 0.90691 0.92989 0.89928 0.95014 0.89842 0.94244 0.90563 0.90348 0.90253 0.90231 0.89619 0.89166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.44 13.29 21.45 0.28 -52.15 16 2 C 0.02 0.99 5.46 84.65 0.46 1.45 16 3 Si 0.97 43.94 29.54 68.60 2.03 45.96 16 4 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 5 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.55 -31.16 9.24 25.60 0.24 -30.92 16 8 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 9 C 0.27 14.30 6.26 85.64 0.54 14.84 16 10 N -0.34 -16.50 3.67 -351.84 -1.29 -17.79 16 11 C 0.06 2.26 11.44 83.52 0.96 3.22 16 12 C -0.29 -11.83 9.61 22.10 0.21 -11.62 16 13 C 0.29 11.64 8.11 133.31 1.08 12.72 16 14 N -0.64 -19.60 5.46 -321.23 -1.75 -21.35 16 15 C 0.71 20.47 8.49 179.05 1.52 21.99 16 16 O -0.60 -21.59 13.12 -4.01 -0.05 -21.64 16 17 N -0.72 -13.50 5.06 -457.04 -2.31 -15.81 16 18 C 0.17 2.95 2.51 45.15 0.11 3.06 16 19 H 0.07 1.47 7.55 -2.39 -0.02 1.45 16 20 C -0.12 -2.20 5.61 30.74 0.17 -2.03 16 21 C 0.06 0.98 5.87 86.75 0.51 1.49 16 22 N -0.53 -7.30 4.84 -864.17 -4.18 -11.49 16 23 C 0.04 0.41 6.71 87.02 0.58 0.99 16 24 C -0.12 -0.97 7.05 32.03 0.23 -0.74 16 25 C -0.11 -0.98 6.65 31.36 0.21 -0.77 16 26 C 0.06 0.74 2.50 44.40 0.11 0.86 16 27 H 0.05 0.65 7.98 -2.39 -0.02 0.63 16 28 C -0.10 -1.18 5.11 30.57 0.16 -1.03 16 29 N -0.35 -16.45 12.42 -54.44 -0.68 -17.13 16 30 H 0.27 14.46 8.31 -92.70 -0.77 13.69 16 31 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 3.00 8.07 -2.39 -0.02 2.98 16 33 H 0.20 6.40 8.06 -2.91 -0.02 6.38 16 34 H 0.17 6.54 5.91 -2.91 -0.02 6.52 16 35 H 0.42 10.26 8.84 -92.71 -0.82 9.44 16 36 H 0.41 5.14 8.62 -92.71 -0.80 4.34 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.03 0.53 7.99 -2.39 -0.02 0.51 16 41 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.08 0.64 8.00 -2.39 -0.02 0.62 16 46 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 48 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -71.21 386.00 -1.51 -72.72 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: -0.64 Total: 25.18 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: 7.08 Total: 13.51 kcal Atomic # 7 Polarization: -125.80 SS G_CDS: -9.93 Total: -135.73 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.05 Total: -21.64 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -71.21 -1.51 -72.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365647135.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.235 kcal (2) G-P(sol) polarization free energy of solvation -71.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds