Wall clock time and date at job start Tue Mar 31 2020 18:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99953 * 2 1 4 4 H 1.48502 * 109.46889 * 270.00172 * 3 2 1 5 5 H 1.48505 * 109.46863 * 30.00056 * 3 2 1 6 6 H 1.48492 * 109.47209 * 149.99994 * 3 2 1 7 7 C 1.37874 * 120.00383 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00149 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99929 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47162 * 179.97438 * 9 7 2 11 11 C 1.34965 * 125.97191 * 125.00404 * 10 9 7 12 12 C 1.35249 * 107.85614 * 180.02562 * 11 10 9 13 13 C 1.40400 * 107.86626 * 0.02562 * 12 11 10 14 14 N 1.40200 * 125.97051 * 180.02562 * 13 12 11 15 15 C 1.34770 * 119.99983 * 359.97438 * 14 13 12 16 16 O 1.21595 * 120.00009 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00174 * 180.02562 * 15 14 13 18 18 C 1.46502 * 120.00359 * 180.02562 * 17 15 14 19 19 H 1.09002 * 109.24553 * 34.99694 * 18 17 15 20 20 C 1.52826 * 109.24725 * 275.54225 * 18 17 15 21 21 C 1.53642 * 110.64248 * 293.61946 * 20 18 17 22 22 N 1.45540 * 107.85427 * 302.86610 * 21 20 18 23 23 C 1.46329 * 117.22204 * 185.56381 * 22 21 20 24 24 C 1.54798 * 105.96305 * 208.04701 * 23 22 21 25 25 C 1.55338 * 104.99151 * 3.64711 * 24 23 22 26 26 C 1.48651 * 109.72126 * 65.32066 * 22 21 20 27 27 H 1.09003 * 111.11585 * 52.55223 * 26 22 21 28 28 C 1.52365 * 107.34906 * 290.46285 * 26 22 21 29 29 N 1.31214 * 108.05892 * 0.25887 * 13 12 11 30 30 H 0.96993 * 120.00534 * 359.97438 * 1 2 3 31 31 H 1.09006 * 109.46758 * 60.00302 * 9 7 2 32 32 H 1.08997 * 109.47586 * 300.00046 * 9 7 2 33 33 H 1.07999 * 126.07552 * 0.02562 * 11 10 9 34 34 H 1.07996 * 126.06462 * 179.97438 * 12 11 10 35 35 H 0.97000 * 119.99838 * 179.97438 * 14 13 12 36 36 H 0.97006 * 120.00099 * 359.97438 * 17 15 14 37 37 H 1.09006 * 109.24296 * 53.91676 * 20 18 17 38 38 H 1.09001 * 109.24476 * 173.35728 * 20 18 17 39 39 H 1.08990 * 109.78277 * 62.45181 * 21 20 18 40 40 H 1.08997 * 109.78362 * 183.27907 * 21 20 18 41 41 H 1.09000 * 110.16088 * 327.17028 * 23 22 21 42 42 H 1.09007 * 110.15710 * 88.85507 * 23 22 21 43 43 H 1.08997 * 110.33719 * 122.52104 * 24 23 22 44 44 H 1.09002 * 110.34367 * 244.76924 * 24 23 22 45 45 H 1.08996 * 110.91103 * 140.38954 * 25 24 23 46 46 H 1.08991 * 110.90473 * 264.00346 * 25 24 23 47 47 H 1.08997 * 109.83088 * 303.30090 * 28 26 22 48 48 H 1.09001 * 109.83760 * 182.34543 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0017 10 7 2.2032 -3.6126 0.0015 11 6 2.2429 -4.6220 0.8966 12 6 3.2617 -5.4420 0.5520 13 6 3.8695 -4.9140 -0.5982 14 7 4.9654 -5.4650 -1.2772 15 6 5.5302 -6.6048 -0.8320 16 8 5.0896 -7.1551 0.1587 17 7 6.5840 -7.1342 -1.4844 18 6 7.1977 -8.3735 -1.0009 19 1 6.4235 -9.0209 -0.5891 20 6 8.2106 -8.0404 0.0939 21 6 9.3933 -7.2489 -0.4852 22 7 9.9834 -8.0445 -1.5515 23 6 11.2103 -7.5359 -2.1657 24 6 11.2186 -8.0807 -3.6146 25 6 9.8702 -8.8365 -3.7674 26 6 9.0111 -8.1885 -2.6667 27 1 8.6338 -7.2172 -2.9867 28 6 7.8849 -9.0888 -2.1741 29 7 3.2359 -3.8121 -0.9237 30 1 -0.4850 0.8399 0.0004 31 1 0.6241 -2.5575 -0.8881 32 1 0.6248 -2.5564 0.8919 33 1 1.5790 -4.7518 1.7385 34 1 3.5559 -6.3427 1.0702 35 1 5.3171 -5.0258 -2.0673 36 1 6.9358 -6.6950 -2.2746 37 1 7.7229 -7.4444 0.8653 38 1 8.5802 -8.9660 0.5351 39 1 9.0405 -6.2987 -0.8859 40 1 10.1339 -7.0692 0.2941 41 1 11.2022 -6.4459 -2.1744 42 1 12.0817 -7.9001 -1.6214 43 1 11.2750 -7.2586 -4.3281 44 1 12.0548 -8.7652 -3.7572 45 1 9.4364 -8.6630 -4.7522 46 1 9.9990 -9.9029 -3.5829 47 1 8.2935 -10.0418 -1.8380 48 1 7.1669 -9.2559 -2.9771 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000365647137.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:32 Heat of formation + Delta-G solvation = 61.907531 kcal Electronic energy + Delta-G solvation = -28446.120098 eV Core-core repulsion = 24537.788200 eV Total energy + Delta-G solvation = -3908.331898 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.98316 -40.37330 -39.24800 -36.18690 -34.60017 -33.47812 -33.14136 -31.92059 -30.69225 -29.39566 -29.19050 -27.47282 -26.53303 -23.57192 -23.22869 -22.24130 -21.66852 -21.28492 -20.52021 -19.79620 -19.40699 -18.01487 -16.78282 -16.55769 -16.22898 -16.18052 -15.68338 -15.50926 -15.07304 -14.73946 -14.48887 -14.30658 -14.16484 -13.83944 -13.54847 -13.31117 -12.87344 -12.81807 -12.73695 -12.31493 -12.21168 -12.14694 -11.78537 -11.72102 -11.53174 -11.44612 -11.05440 -11.01372 -10.89639 -10.87173 -10.67349 -10.38580 -10.24920 -10.04828 -9.66018 -9.47504 -9.21082 -8.65334 -8.62412 -8.07585 -7.38813 -6.23336 -4.28258 2.42094 2.69428 3.14398 3.23861 3.29554 3.34737 3.55483 3.65677 3.86675 4.11301 4.22355 4.28208 4.38417 4.52874 4.60927 4.71084 4.74158 4.87364 4.94083 5.11684 5.15044 5.19919 5.26166 5.37866 5.44605 5.47184 5.52558 5.58295 5.61310 5.64042 5.74811 5.79082 5.85572 5.86536 5.99088 6.26626 6.38577 6.56907 6.60103 6.62484 6.88963 6.90245 7.03222 7.13133 7.52700 7.70841 7.84394 8.00241 8.09008 8.63008 8.68734 8.82367 9.37206 10.85341 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018209 B = 0.002209 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.335636 B =12673.250470 C =13542.449036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.068 0.932 9 C 0.259 3.741 10 N -0.321 5.321 11 C 0.050 3.950 12 C -0.286 4.286 13 C 0.276 3.724 14 N -0.645 5.645 15 C 0.713 3.287 16 O -0.567 6.567 17 N -0.741 5.741 18 C 0.165 3.835 19 H 0.093 0.907 20 C -0.125 4.125 21 C 0.062 3.938 22 N -0.536 5.536 23 C 0.049 3.951 24 C -0.129 4.129 25 C -0.116 4.116 26 C 0.063 3.937 27 H 0.053 0.947 28 C -0.111 4.111 29 N -0.309 5.309 30 H 0.267 0.733 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.167 0.833 34 H 0.161 0.839 35 H 0.405 0.595 36 H 0.392 0.608 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.034 0.966 40 H 0.074 0.926 41 H 0.038 0.962 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.077 0.923 47 H 0.091 0.909 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.243 -19.005 -6.058 28.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.087 0.913 9 C 0.141 3.859 10 N -0.103 5.103 11 C -0.100 4.100 12 C -0.317 4.317 13 C 0.022 3.978 14 N -0.295 5.295 15 C 0.413 3.587 16 O -0.442 6.442 17 N -0.398 5.398 18 C 0.060 3.940 19 H 0.111 0.889 20 C -0.164 4.164 21 C -0.066 4.066 22 N -0.261 5.261 23 C -0.079 4.079 24 C -0.167 4.167 25 C -0.154 4.154 26 C -0.045 4.045 27 H 0.070 0.930 28 C -0.149 4.149 29 N -0.140 5.140 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.184 0.816 34 H 0.178 0.822 35 H 0.239 0.761 36 H 0.226 0.774 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.052 0.948 40 H 0.092 0.908 41 H 0.056 0.944 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.096 0.904 47 H 0.109 0.891 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 19.646 -18.770 -5.683 27.759 hybrid contribution 0.650 1.736 -0.508 1.922 sum 20.296 -17.033 -6.191 27.210 Atomic orbital electron populations 1.69913 1.06023 1.27594 1.49851 1.24946 0.94984 0.99530 0.94665 0.86331 0.79668 0.82182 0.78329 1.20374 1.20981 1.19746 1.21260 0.93978 0.89410 1.51913 0.91343 1.19728 0.85622 0.81315 0.99224 1.49047 1.23078 1.19789 1.18369 1.22557 1.00339 0.90340 0.96719 1.21510 1.02033 1.06479 1.01696 1.18790 0.90704 0.93969 0.94350 1.41415 1.31583 1.25147 1.31317 1.15650 0.79925 0.80144 0.83016 1.90862 1.64643 1.62212 1.26481 1.45275 1.33623 1.28340 1.32598 1.20899 0.94712 0.84462 0.93894 0.88905 1.22014 0.94851 1.01442 0.98138 1.21925 0.96402 0.94338 0.93952 1.62783 1.03618 1.50515 1.09192 1.22498 0.93351 0.97494 0.94582 1.22632 0.98283 0.99967 0.95810 1.22379 0.94758 1.00414 0.97810 1.22583 0.92929 0.97942 0.91048 0.92955 1.21835 0.96392 0.99220 0.97498 1.77321 1.03784 1.16211 1.16675 0.92345 0.93784 0.92545 0.81559 0.82179 0.76069 0.77366 0.90508 0.90253 0.94771 0.90796 0.94410 0.90491 0.91514 0.90964 0.91031 0.90393 0.89061 0.90634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.44 13.29 55.43 0.74 -24.71 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.91 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.53 -14.77 9.23 -34.44 -0.32 -15.08 16 8 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 9 C 0.26 6.63 6.26 -5.19 -0.03 6.60 16 10 N -0.32 -7.55 3.67 -62.56 -0.23 -7.78 16 11 C 0.05 1.02 11.44 -17.24 -0.20 0.83 16 12 C -0.29 -5.78 9.61 -39.83 -0.38 -6.16 16 13 C 0.28 5.62 8.11 -154.35 -1.25 4.36 16 14 N -0.64 -10.10 5.46 -15.51 -0.08 -10.19 16 15 C 0.71 10.38 8.48 -86.93 -0.74 9.65 16 16 O -0.57 -10.07 13.13 5.28 0.07 -10.00 16 17 N -0.74 -7.40 4.63 -58.44 -0.27 -7.67 16 18 C 0.17 1.48 2.74 -67.69 -0.19 1.29 16 19 H 0.09 0.98 7.56 -51.93 -0.39 0.58 16 20 C -0.13 -1.14 5.67 -26.49 -0.15 -1.29 16 21 C 0.06 0.53 5.71 -4.23 -0.02 0.50 16 22 N -0.54 -4.08 4.65 -225.06 -1.05 -5.13 16 23 C 0.05 0.33 6.86 -3.19 -0.02 0.31 16 24 C -0.13 -0.70 6.99 -24.54 -0.17 -0.88 16 25 C -0.12 -0.64 6.61 -25.01 -0.17 -0.80 16 26 C 0.06 0.42 2.46 -66.58 -0.16 0.25 16 27 H 0.05 0.36 6.56 -51.93 -0.34 0.02 16 28 C -0.11 -0.73 5.33 -26.72 -0.14 -0.88 16 29 N -0.31 -7.18 12.41 31.44 0.39 -6.79 16 30 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 33 H 0.17 2.77 8.06 -52.49 -0.42 2.34 16 34 H 0.16 3.18 5.91 -52.49 -0.31 2.87 16 35 H 0.40 5.19 8.84 -40.82 -0.36 4.83 16 36 H 0.39 3.07 7.02 -40.82 -0.29 2.78 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.03 0.32 7.85 -51.93 -0.41 -0.09 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.04 0.27 8.04 -51.93 -0.42 -0.15 16 42 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 47 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 382.58 15.07 5.77 5.77 Total: -1.00 -32.53 382.58 -11.28 -43.81 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -7.55 Total: 5.96 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -4.04 Total: 0.30 kcal Atomic # 7 Polarization: -61.77 SS G_CDS: -0.50 Total: -62.27 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.07 Total: -10.00 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.53 -11.28 -43.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365647137.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.719 kcal (2) G-P(sol) polarization free energy of solvation -32.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds