Wall clock time and date at job start Tue Mar 31 2020 18:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99953 * 2 1 4 4 H 1.48502 * 109.46889 * 270.00172 * 3 2 1 5 5 H 1.48505 * 109.46863 * 30.00056 * 3 2 1 6 6 H 1.48492 * 109.47209 * 149.99994 * 3 2 1 7 7 C 1.37874 * 120.00383 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00149 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99929 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47162 * 179.97438 * 9 7 2 11 11 C 1.34965 * 125.97191 * 125.00404 * 10 9 7 12 12 C 1.35249 * 107.85614 * 180.02562 * 11 10 9 13 13 C 1.40400 * 107.86626 * 0.02562 * 12 11 10 14 14 N 1.40200 * 125.97051 * 180.02562 * 13 12 11 15 15 C 1.34770 * 119.99983 * 359.97438 * 14 13 12 16 16 O 1.21595 * 120.00009 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00174 * 180.02562 * 15 14 13 18 18 C 1.46502 * 120.00359 * 180.02562 * 17 15 14 19 19 H 1.09002 * 109.24553 * 34.99694 * 18 17 15 20 20 C 1.52826 * 109.24725 * 275.54225 * 18 17 15 21 21 C 1.53642 * 110.64248 * 293.61946 * 20 18 17 22 22 N 1.45540 * 107.85427 * 302.86610 * 21 20 18 23 23 C 1.46329 * 117.22204 * 185.56381 * 22 21 20 24 24 C 1.54798 * 105.96305 * 208.04701 * 23 22 21 25 25 C 1.55338 * 104.99151 * 3.64711 * 24 23 22 26 26 C 1.48651 * 109.72126 * 65.32066 * 22 21 20 27 27 H 1.09003 * 111.11585 * 52.55223 * 26 22 21 28 28 C 1.52365 * 107.34906 * 290.46285 * 26 22 21 29 29 N 1.31214 * 108.05892 * 0.25887 * 13 12 11 30 30 H 0.96993 * 120.00534 * 359.97438 * 1 2 3 31 31 H 1.09006 * 109.46758 * 60.00302 * 9 7 2 32 32 H 1.08997 * 109.47586 * 300.00046 * 9 7 2 33 33 H 1.07999 * 126.07552 * 0.02562 * 11 10 9 34 34 H 1.07996 * 126.06462 * 179.97438 * 12 11 10 35 35 H 0.97000 * 119.99838 * 179.97438 * 14 13 12 36 36 H 0.97006 * 120.00099 * 359.97438 * 17 15 14 37 37 H 1.09006 * 109.24296 * 53.91676 * 20 18 17 38 38 H 1.09001 * 109.24476 * 173.35728 * 20 18 17 39 39 H 1.08990 * 109.78277 * 62.45181 * 21 20 18 40 40 H 1.08997 * 109.78362 * 183.27907 * 21 20 18 41 41 H 1.09000 * 110.16088 * 327.17028 * 23 22 21 42 42 H 1.09007 * 110.15710 * 88.85507 * 23 22 21 43 43 H 1.08997 * 110.33719 * 122.52104 * 24 23 22 44 44 H 1.09002 * 110.34367 * 244.76924 * 24 23 22 45 45 H 1.08996 * 110.91103 * 140.38954 * 25 24 23 46 46 H 1.08991 * 110.90473 * 264.00346 * 25 24 23 47 47 H 1.08997 * 109.83088 * 303.30090 * 28 26 22 48 48 H 1.09001 * 109.83760 * 182.34543 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0017 10 7 2.2032 -3.6126 0.0015 11 6 2.2429 -4.6220 0.8966 12 6 3.2617 -5.4420 0.5520 13 6 3.8695 -4.9140 -0.5982 14 7 4.9654 -5.4650 -1.2772 15 6 5.5302 -6.6048 -0.8320 16 8 5.0896 -7.1551 0.1587 17 7 6.5840 -7.1342 -1.4844 18 6 7.1977 -8.3735 -1.0009 19 1 6.4235 -9.0209 -0.5891 20 6 8.2106 -8.0404 0.0939 21 6 9.3933 -7.2489 -0.4852 22 7 9.9834 -8.0445 -1.5515 23 6 11.2103 -7.5359 -2.1657 24 6 11.2186 -8.0807 -3.6146 25 6 9.8702 -8.8365 -3.7674 26 6 9.0111 -8.1885 -2.6667 27 1 8.6338 -7.2172 -2.9867 28 6 7.8849 -9.0888 -2.1741 29 7 3.2359 -3.8121 -0.9237 30 1 -0.4850 0.8399 0.0004 31 1 0.6241 -2.5575 -0.8881 32 1 0.6248 -2.5564 0.8919 33 1 1.5790 -4.7518 1.7385 34 1 3.5559 -6.3427 1.0702 35 1 5.3171 -5.0258 -2.0673 36 1 6.9358 -6.6950 -2.2746 37 1 7.7229 -7.4444 0.8653 38 1 8.5802 -8.9660 0.5351 39 1 9.0405 -6.2987 -0.8859 40 1 10.1339 -7.0692 0.2941 41 1 11.2022 -6.4459 -2.1744 42 1 12.0817 -7.9001 -1.6214 43 1 11.2750 -7.2586 -4.3281 44 1 12.0548 -8.7652 -3.7572 45 1 9.4364 -8.6630 -4.7522 46 1 9.9990 -9.9029 -3.5829 47 1 8.2935 -10.0418 -1.8380 48 1 7.1669 -9.2559 -2.9771 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000365647137.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:31 Heat of formation + Delta-G solvation = 40.632860 kcal Electronic energy + Delta-G solvation = -28447.042637 eV Core-core repulsion = 24537.788200 eV Total energy + Delta-G solvation = -3909.254437 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.26251 -41.47747 -40.31911 -37.04991 -36.07006 -35.28500 -34.01302 -32.99836 -32.13510 -30.92117 -29.97548 -28.58759 -27.93303 -25.12861 -24.12830 -23.49953 -22.43747 -22.05690 -21.75808 -21.24993 -20.22502 -19.22792 -18.68347 -18.18680 -17.23796 -16.89096 -16.77111 -16.57004 -16.32629 -16.00469 -15.66205 -15.63305 -15.34531 -14.88909 -14.48694 -14.30799 -14.23910 -13.97496 -13.79558 -13.64748 -13.45612 -13.33450 -12.94411 -12.75802 -12.72075 -12.33107 -12.28776 -12.12430 -12.08128 -11.99414 -11.62964 -11.57223 -11.42250 -11.39397 -11.28978 -11.09359 -10.72464 -10.18611 -9.71937 -9.26101 -9.04522 -8.32848 -6.47025 1.08300 1.15153 1.37599 1.38235 1.49869 1.71943 2.12536 2.35703 2.42613 2.98175 2.98688 3.16303 3.56687 3.65791 3.97449 3.98543 4.03036 4.10374 4.17506 4.28515 4.30287 4.34133 4.45187 4.66283 4.69820 4.78200 4.79687 4.87616 4.88926 4.95388 4.97514 4.98107 5.03075 5.04465 5.08461 5.13481 5.17689 5.22739 5.34668 5.37581 5.55987 5.59248 5.76329 5.88197 5.98408 6.04603 6.28480 6.29945 6.63711 6.75969 7.15205 7.22787 7.44805 8.74581 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018209 B = 0.002209 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.335636 B =12673.250470 C =13542.449036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.018 3.982 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.546 4.546 8 H 0.051 0.949 9 C 0.273 3.727 10 N -0.345 5.345 11 C 0.056 3.944 12 C -0.292 4.292 13 C 0.285 3.715 14 N -0.638 5.638 15 C 0.713 3.287 16 O -0.598 6.598 17 N -0.719 5.719 18 C 0.164 3.836 19 H 0.079 0.921 20 C -0.120 4.120 21 C 0.067 3.933 22 N -0.540 5.540 23 C 0.045 3.955 24 C -0.126 4.126 25 C -0.112 4.112 26 C 0.060 3.940 27 H 0.052 0.948 28 C -0.100 4.100 29 N -0.349 5.349 30 H 0.273 0.727 31 H 0.021 0.979 32 H 0.059 0.941 33 H 0.201 0.799 34 H 0.167 0.833 35 H 0.418 0.582 36 H 0.406 0.594 37 H 0.051 0.949 38 H 0.087 0.913 39 H 0.024 0.976 40 H 0.073 0.927 41 H 0.032 0.968 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.099 0.901 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.875 -19.655 -6.869 30.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.585 4.585 8 H 0.070 0.930 9 C 0.154 3.846 10 N -0.127 5.127 11 C -0.093 4.093 12 C -0.323 4.323 13 C 0.030 3.970 14 N -0.290 5.290 15 C 0.412 3.588 16 O -0.476 6.476 17 N -0.376 5.376 18 C 0.060 3.940 19 H 0.097 0.903 20 C -0.159 4.159 21 C -0.062 4.062 22 N -0.266 5.266 23 C -0.083 4.083 24 C -0.164 4.164 25 C -0.150 4.150 26 C -0.047 4.047 27 H 0.070 0.930 28 C -0.139 4.139 29 N -0.180 5.180 30 H 0.082 0.918 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.217 0.783 34 H 0.184 0.816 35 H 0.255 0.745 36 H 0.243 0.757 37 H 0.070 0.930 38 H 0.105 0.895 39 H 0.043 0.957 40 H 0.091 0.909 41 H 0.050 0.950 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.101 0.899 46 H 0.099 0.901 47 H 0.117 0.883 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 21.327 -19.450 -6.535 29.595 hybrid contribution 0.230 1.802 -0.249 1.834 sum 21.557 -17.648 -6.784 28.673 Atomic orbital electron populations 1.69988 1.07183 1.28758 1.49974 1.25742 0.95861 1.02717 0.93942 0.85348 0.78348 0.78167 0.78547 1.19775 1.19655 1.19803 1.21393 0.93332 0.90993 1.52745 0.93035 1.19332 0.85676 0.81510 0.98092 1.48814 1.23718 1.20382 1.19824 1.23156 1.00483 0.88961 0.96672 1.21683 1.02127 1.06666 1.01851 1.19084 0.90888 0.92909 0.94162 1.41425 1.30536 1.25482 1.31549 1.15801 0.80502 0.79628 0.82844 1.90834 1.65800 1.62950 1.28001 1.45161 1.31873 1.28251 1.32271 1.21031 0.94320 0.83658 0.95013 0.90291 1.21926 0.94951 1.01442 0.97567 1.21822 0.96103 0.93855 0.94377 1.62797 1.04167 1.50176 1.09432 1.22562 0.92949 0.97251 0.95521 1.22631 0.98655 1.00277 0.94839 1.22380 0.94370 1.00401 0.97824 1.22655 0.92882 0.98029 0.91178 0.93032 1.21787 0.96384 0.99072 0.96615 1.77241 1.04879 1.17995 1.17865 0.91835 0.96072 0.92361 0.78266 0.81580 0.74475 0.75715 0.93032 0.89453 0.95730 0.90851 0.94963 0.90360 0.91033 0.90162 0.89874 0.90120 0.88277 0.89435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.42 13.29 21.45 0.28 -52.14 16 2 C 0.02 0.99 5.46 84.65 0.46 1.45 16 3 Si 0.97 43.87 29.54 68.60 2.03 45.89 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 7 C -0.55 -31.12 9.23 25.60 0.24 -30.88 16 8 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 9 C 0.27 14.32 6.26 85.63 0.54 14.85 16 10 N -0.35 -16.49 3.67 -351.83 -1.29 -17.78 16 11 C 0.06 2.25 11.44 83.52 0.96 3.20 16 12 C -0.29 -11.73 9.61 22.11 0.21 -11.52 16 13 C 0.29 11.60 8.11 133.31 1.08 12.68 16 14 N -0.64 -19.63 5.46 -321.23 -1.75 -21.39 16 15 C 0.71 20.27 8.48 179.06 1.52 21.78 16 16 O -0.60 -21.11 13.13 -4.01 -0.05 -21.17 16 17 N -0.72 -13.47 4.63 -457.06 -2.12 -15.58 16 18 C 0.16 2.74 2.74 45.15 0.12 2.86 16 19 H 0.08 1.60 7.56 -2.39 -0.02 1.58 16 20 C -0.12 -2.11 5.67 30.75 0.17 -1.94 16 21 C 0.07 1.08 5.71 86.78 0.50 1.57 16 22 N -0.54 -7.33 4.65 -865.96 -4.02 -11.36 16 23 C 0.04 0.53 6.86 87.03 0.60 1.13 16 24 C -0.13 -1.08 6.99 32.01 0.22 -0.86 16 25 C -0.11 -0.92 6.61 31.71 0.21 -0.71 16 26 C 0.06 0.66 2.46 44.68 0.11 0.77 16 27 H 0.05 0.58 6.56 -2.39 -0.02 0.57 16 28 C -0.10 -1.10 5.33 30.60 0.16 -0.93 16 29 N -0.35 -16.45 12.41 -54.43 -0.68 -17.13 16 30 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 31 H 0.02 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.06 2.99 8.07 -2.39 -0.02 2.97 16 33 H 0.20 6.38 8.06 -2.91 -0.02 6.36 16 34 H 0.17 6.52 5.91 -2.91 -0.02 6.50 16 35 H 0.42 10.35 8.84 -92.71 -0.82 9.53 16 36 H 0.41 5.61 7.02 -92.70 -0.65 4.96 16 37 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.02 0.44 7.85 -2.39 -0.02 0.42 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.03 0.42 8.04 -2.39 -0.02 0.40 16 42 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 43 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.08 0.65 8.10 -2.39 -0.02 0.63 16 47 H 0.10 1.00 8.14 -2.39 -0.02 0.99 16 48 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -70.17 382.58 -0.99 -71.16 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: -0.49 Total: 26.02 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 7.10 Total: 13.47 kcal Atomic # 7 Polarization: -125.80 SS G_CDS: -9.58 Total: -135.37 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.05 Total: -21.17 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -70.17 -0.99 -71.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365647137.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.795 kcal (2) G-P(sol) polarization free energy of solvation -70.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds