Wall clock time and date at job start Tue Mar 31 2020 18:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 120.00044 * 2 1 4 4 H 1.48503 * 109.46483 * 269.99512 * 3 2 1 5 5 H 1.48497 * 109.47046 * 29.99497 * 3 2 1 6 6 H 1.48501 * 109.46802 * 149.99786 * 3 2 1 7 7 C 1.37875 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99753 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00297 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47076 * 179.97438 * 9 7 2 11 11 C 1.34962 * 125.97330 * 125.00111 * 10 9 7 12 12 C 1.35244 * 107.85770 * 179.74606 * 11 10 9 13 13 C 1.40403 * 107.86867 * 0.42966 * 12 11 10 14 14 N 1.40187 * 125.97517 * 179.82762 * 13 12 11 15 15 C 1.34777 * 120.00005 * 359.71777 * 14 13 12 16 16 O 1.21589 * 120.00181 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99906 * 180.02562 * 15 14 13 18 18 C 1.46505 * 119.99551 * 180.02562 * 17 15 14 19 19 H 1.08990 * 109.24737 * 325.53799 * 18 17 15 20 20 C 1.52821 * 109.24748 * 84.99981 * 18 17 15 21 21 C 1.53624 * 110.70255 * 66.50393 * 20 18 17 22 22 N 1.45664 * 107.80929 * 57.37031 * 21 20 18 23 23 C 1.47086 * 116.54038 * 177.32848 * 22 21 20 24 24 C 1.55189 * 103.52512 * 162.42059 * 23 22 21 25 25 C 1.54985 * 104.93324 * 336.00521 * 24 23 22 26 26 C 1.48724 * 109.34066 * 294.45383 * 22 21 20 27 27 H 1.09002 * 110.33987 * 308.88712 * 26 22 21 28 28 C 1.52251 * 107.50917 * 69.17512 * 26 22 21 29 29 N 1.31211 * 108.05019 * 359.56676 * 13 12 11 30 30 H 0.97007 * 119.99907 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.47192 * 59.99447 * 9 7 2 32 32 H 1.09001 * 109.46948 * 299.99735 * 9 7 2 33 33 H 1.08008 * 126.07414 * 0.03980 * 11 10 9 34 34 H 1.08005 * 126.07059 * 180.25746 * 12 11 10 35 35 H 0.97006 * 120.00093 * 179.71769 * 14 13 12 36 36 H 0.96996 * 119.99900 * 359.97438 * 17 15 14 37 37 H 1.08996 * 109.22917 * 306.18215 * 20 18 17 38 38 H 1.09001 * 109.19356 * 186.79135 * 20 18 17 39 39 H 1.08998 * 109.79371 * 297.79273 * 21 20 18 40 40 H 1.09002 * 109.83914 * 176.97589 * 21 20 18 41 41 H 1.09001 * 110.61211 * 280.93203 * 23 22 21 42 42 H 1.08997 * 110.61274 * 43.75010 * 23 22 21 43 43 H 1.09000 * 110.34880 * 94.86857 * 24 23 22 44 44 H 1.09004 * 110.34797 * 217.14100 * 24 23 22 45 45 H 1.09003 * 110.48533 * 238.83358 * 25 24 23 46 46 H 1.08997 * 110.49149 * 116.18585 * 25 24 23 47 47 H 1.09002 * 109.83721 * 56.60219 * 28 26 22 48 48 H 1.08994 * 109.83928 * 177.57035 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.2420 -4.6224 0.8952 12 6 3.2571 -5.4456 0.5475 13 6 3.8693 -4.9143 -0.5989 14 7 4.9657 -5.4649 -1.2772 15 6 5.5301 -6.6050 -0.8322 16 8 5.0886 -7.1559 0.1578 17 7 6.5845 -7.1341 -1.4840 18 6 7.1976 -8.3737 -1.0006 19 1 7.1487 -8.3980 0.0879 20 6 6.4311 -9.5687 -1.5662 21 6 6.6017 -9.6512 -3.0907 22 7 8.0277 -9.7379 -3.3753 23 6 8.4079 -9.8872 -4.7883 24 6 9.9090 -9.4936 -4.8038 25 6 10.0966 -8.5857 -3.5618 26 6 8.6900 -8.4714 -2.9641 27 1 8.1669 -7.6149 -3.3895 28 6 8.6547 -8.4088 -1.4433 29 7 3.2322 -3.8154 -0.9277 30 1 -0.4850 0.8401 -0.0004 31 1 0.6246 -2.5571 -0.8896 32 1 0.6240 -2.5567 0.8903 33 1 1.5774 -4.7527 1.7365 34 1 3.5474 -6.3498 1.0621 35 1 5.3181 -5.0252 -2.0668 36 1 6.9369 -6.6944 -2.2736 37 1 5.3728 -9.4614 -1.3286 38 1 6.8098 -10.4846 -1.1125 39 1 6.1859 -8.7583 -3.5575 40 1 6.0946 -10.5374 -3.4723 41 1 8.2785 -10.9195 -5.1135 42 1 7.8254 -9.2127 -5.4158 43 1 10.5347 -10.3823 -4.7215 44 1 10.1474 -8.9441 -5.7145 45 1 10.4656 -7.6040 -3.8591 46 1 10.7775 -9.0504 -2.8488 47 1 9.1319 -9.2953 -1.0255 48 1 9.1702 -7.5127 -1.0980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000365647139.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:36 Heat of formation + Delta-G solvation = 62.284517 kcal Electronic energy + Delta-G solvation = -28418.461713 eV Core-core repulsion = 24510.146163 eV Total energy + Delta-G solvation = -3908.315551 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.02586 -40.39776 -39.25482 -36.22952 -34.60457 -33.48454 -33.15613 -31.92841 -30.68848 -29.40894 -29.19844 -27.50988 -26.53641 -23.55683 -23.23053 -22.26395 -21.77319 -21.20630 -20.53885 -19.79762 -19.40419 -18.02122 -16.80119 -16.56180 -16.25807 -16.08714 -15.69471 -15.47372 -15.12890 -14.80792 -14.49960 -14.38653 -14.13885 -13.82742 -13.55166 -13.26122 -12.92455 -12.81317 -12.76275 -12.31776 -12.21010 -12.10429 -11.77565 -11.76242 -11.56592 -11.41837 -11.04757 -10.93246 -10.92114 -10.88168 -10.71341 -10.39703 -10.24795 -10.04619 -9.65868 -9.47912 -9.22155 -8.76785 -8.62387 -8.07721 -7.38943 -6.23296 -4.28207 2.41954 2.69387 3.14172 3.24020 3.29695 3.34888 3.56142 3.65408 3.86504 4.10465 4.22527 4.27991 4.38086 4.52733 4.61225 4.70434 4.75437 4.88582 4.91422 5.11724 5.12278 5.19942 5.21809 5.37487 5.45397 5.48221 5.52169 5.55876 5.60749 5.62827 5.73403 5.77357 5.85007 5.86598 5.96885 6.26294 6.37811 6.53135 6.56777 6.62028 6.82457 6.89687 7.03034 7.12901 7.52543 7.70862 7.84363 8.00031 8.08984 8.62705 8.68675 8.82348 9.37253 10.85336 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.020808 B = 0.002123 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.319820 B =13183.373260 C =13860.254154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.068 0.932 9 C 0.259 3.741 10 N -0.321 5.321 11 C 0.050 3.950 12 C -0.286 4.286 13 C 0.276 3.724 14 N -0.645 5.645 15 C 0.713 3.287 16 O -0.567 6.567 17 N -0.742 5.742 18 C 0.166 3.834 19 H 0.094 0.906 20 C -0.125 4.125 21 C 0.056 3.944 22 N -0.523 5.523 23 C 0.040 3.960 24 C -0.122 4.122 25 C -0.116 4.116 26 C 0.060 3.940 27 H 0.048 0.952 28 C -0.113 4.113 29 N -0.309 5.309 30 H 0.267 0.733 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.167 0.833 34 H 0.161 0.839 35 H 0.405 0.595 36 H 0.392 0.608 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.035 0.965 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.039 0.961 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.090 0.910 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.654 -20.384 -7.558 28.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.087 0.913 9 C 0.141 3.859 10 N -0.103 5.103 11 C -0.099 4.099 12 C -0.317 4.317 13 C 0.022 3.978 14 N -0.295 5.295 15 C 0.412 3.588 16 O -0.442 6.442 17 N -0.399 5.399 18 C 0.061 3.939 19 H 0.112 0.888 20 C -0.165 4.165 21 C -0.072 4.072 22 N -0.248 5.248 23 C -0.087 4.087 24 C -0.160 4.160 25 C -0.154 4.154 26 C -0.048 4.048 27 H 0.066 0.934 28 C -0.151 4.151 29 N -0.140 5.140 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.184 0.816 34 H 0.178 0.822 35 H 0.239 0.761 36 H 0.227 0.773 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.053 0.947 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.058 0.942 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.093 0.907 47 H 0.108 0.892 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 18.061 -20.178 -7.173 28.014 hybrid contribution 0.276 1.459 -0.808 1.691 sum 18.337 -18.719 -7.981 27.392 Atomic orbital electron populations 1.69921 1.06026 1.27582 1.49853 1.24950 0.94990 0.99540 0.94665 0.86328 0.79668 0.82166 0.78331 1.20371 1.20985 1.19735 1.21261 0.93984 0.89406 1.51910 0.91334 1.19727 0.85623 0.81317 0.99223 1.49042 1.23279 1.19790 1.18159 1.22556 1.00396 0.90219 0.96778 1.21511 1.02043 1.06287 1.01895 1.18785 0.90634 0.94015 0.94373 1.41417 1.31506 1.25161 1.31376 1.15662 0.80164 0.80003 0.82929 1.90860 1.64225 1.62466 1.26648 1.45319 1.33919 1.27943 1.32726 1.20688 0.91072 0.82104 1.00037 0.88765 1.22005 1.01508 0.98504 0.94433 1.22002 0.87857 1.00658 0.96708 1.63929 1.10730 1.33178 1.16959 1.22837 0.95645 1.01309 0.88959 1.22531 0.95735 0.99824 0.97900 1.22145 0.96091 0.99853 0.97348 1.22418 0.95226 0.91436 0.95739 0.93369 1.21589 0.95557 1.03562 0.94404 1.77316 1.03841 1.16426 1.16426 0.92352 0.93796 0.92539 0.81558 0.82181 0.76067 0.77346 0.90518 0.90229 0.94695 0.90698 0.90234 0.94222 0.90942 0.91438 0.91233 0.90652 0.89166 0.90532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.44 13.29 55.43 0.74 -24.71 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.91 21.46 29.54 -169.99 -5.02 16.43 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.53 -14.76 9.24 -34.44 -0.32 -15.08 16 8 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 9 C 0.26 6.63 6.26 -5.19 -0.03 6.60 16 10 N -0.32 -7.55 3.67 -62.56 -0.23 -7.78 16 11 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 12 C -0.29 -5.78 9.61 -39.83 -0.38 -6.17 16 13 C 0.28 5.62 8.11 -154.37 -1.25 4.37 16 14 N -0.64 -10.11 5.45 -15.51 -0.08 -10.19 16 15 C 0.71 10.39 8.49 -86.92 -0.74 9.65 16 16 O -0.57 -10.08 13.12 5.29 0.07 -10.01 16 17 N -0.74 -7.41 4.62 -59.10 -0.27 -7.69 16 18 C 0.17 1.48 2.74 -68.36 -0.19 1.30 16 19 H 0.09 1.00 7.54 -51.93 -0.39 0.61 16 20 C -0.13 -1.12 5.67 -26.50 -0.15 -1.27 16 21 C 0.06 0.46 5.73 -4.17 -0.02 0.43 16 22 N -0.52 -3.91 4.85 -224.50 -1.09 -5.00 16 23 C 0.04 0.26 6.71 -2.56 -0.02 0.25 16 24 C -0.12 -0.66 7.05 -24.52 -0.17 -0.83 16 25 C -0.12 -0.65 6.66 -25.55 -0.17 -0.82 16 26 C 0.06 0.40 2.38 -66.95 -0.16 0.24 16 27 H 0.05 0.33 6.41 -51.93 -0.33 0.00 16 28 C -0.11 -0.76 5.21 -27.45 -0.14 -0.90 16 29 N -0.31 -7.19 12.42 31.44 0.39 -6.80 16 30 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.04 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 33 H 0.17 2.77 8.06 -52.48 -0.42 2.34 16 34 H 0.16 3.18 5.91 -52.48 -0.31 2.87 16 35 H 0.40 5.19 8.84 -40.82 -0.36 4.83 16 36 H 0.39 3.08 6.99 -40.82 -0.29 2.80 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.03 0.31 7.80 -51.93 -0.40 -0.09 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.07 0.41 8.02 -51.93 -0.42 -0.01 16 47 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 382.32 15.07 5.76 5.76 Total: -1.00 -32.54 382.32 -11.32 -43.86 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -7.54 Total: 5.93 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -4.04 Total: 0.19 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: -0.55 Total: -62.16 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.07 Total: -10.01 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.54 -11.32 -43.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365647139.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.140 kcal (2) G-P(sol) polarization free energy of solvation -32.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds