Wall clock time and date at job start Tue Mar 31 2020 18:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 120.00044 * 2 1 4 4 H 1.48503 * 109.46483 * 269.99512 * 3 2 1 5 5 H 1.48497 * 109.47046 * 29.99497 * 3 2 1 6 6 H 1.48501 * 109.46802 * 149.99786 * 3 2 1 7 7 C 1.37875 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99753 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00297 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47076 * 179.97438 * 9 7 2 11 11 C 1.34962 * 125.97330 * 125.00111 * 10 9 7 12 12 C 1.35244 * 107.85770 * 179.74606 * 11 10 9 13 13 C 1.40403 * 107.86867 * 0.42966 * 12 11 10 14 14 N 1.40187 * 125.97517 * 179.82762 * 13 12 11 15 15 C 1.34777 * 120.00005 * 359.71777 * 14 13 12 16 16 O 1.21589 * 120.00181 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99906 * 180.02562 * 15 14 13 18 18 C 1.46505 * 119.99551 * 180.02562 * 17 15 14 19 19 H 1.08990 * 109.24737 * 325.53799 * 18 17 15 20 20 C 1.52821 * 109.24748 * 84.99981 * 18 17 15 21 21 C 1.53624 * 110.70255 * 66.50393 * 20 18 17 22 22 N 1.45664 * 107.80929 * 57.37031 * 21 20 18 23 23 C 1.47086 * 116.54038 * 177.32848 * 22 21 20 24 24 C 1.55189 * 103.52512 * 162.42059 * 23 22 21 25 25 C 1.54985 * 104.93324 * 336.00521 * 24 23 22 26 26 C 1.48724 * 109.34066 * 294.45383 * 22 21 20 27 27 H 1.09002 * 110.33987 * 308.88712 * 26 22 21 28 28 C 1.52251 * 107.50917 * 69.17512 * 26 22 21 29 29 N 1.31211 * 108.05019 * 359.56676 * 13 12 11 30 30 H 0.97007 * 119.99907 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.47192 * 59.99447 * 9 7 2 32 32 H 1.09001 * 109.46948 * 299.99735 * 9 7 2 33 33 H 1.08008 * 126.07414 * 0.03980 * 11 10 9 34 34 H 1.08005 * 126.07059 * 180.25746 * 12 11 10 35 35 H 0.97006 * 120.00093 * 179.71769 * 14 13 12 36 36 H 0.96996 * 119.99900 * 359.97438 * 17 15 14 37 37 H 1.08996 * 109.22917 * 306.18215 * 20 18 17 38 38 H 1.09001 * 109.19356 * 186.79135 * 20 18 17 39 39 H 1.08998 * 109.79371 * 297.79273 * 21 20 18 40 40 H 1.09002 * 109.83914 * 176.97589 * 21 20 18 41 41 H 1.09001 * 110.61211 * 280.93203 * 23 22 21 42 42 H 1.08997 * 110.61274 * 43.75010 * 23 22 21 43 43 H 1.09000 * 110.34880 * 94.86857 * 24 23 22 44 44 H 1.09004 * 110.34797 * 217.14100 * 24 23 22 45 45 H 1.09003 * 110.48533 * 238.83358 * 25 24 23 46 46 H 1.08997 * 110.49149 * 116.18585 * 25 24 23 47 47 H 1.09002 * 109.83721 * 56.60219 * 28 26 22 48 48 H 1.08994 * 109.83928 * 177.57035 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.2420 -4.6224 0.8952 12 6 3.2571 -5.4456 0.5475 13 6 3.8693 -4.9143 -0.5989 14 7 4.9657 -5.4649 -1.2772 15 6 5.5301 -6.6050 -0.8322 16 8 5.0886 -7.1559 0.1578 17 7 6.5845 -7.1341 -1.4840 18 6 7.1976 -8.3737 -1.0006 19 1 7.1487 -8.3980 0.0879 20 6 6.4311 -9.5687 -1.5662 21 6 6.6017 -9.6512 -3.0907 22 7 8.0277 -9.7379 -3.3753 23 6 8.4079 -9.8872 -4.7883 24 6 9.9090 -9.4936 -4.8038 25 6 10.0966 -8.5857 -3.5618 26 6 8.6900 -8.4714 -2.9641 27 1 8.1669 -7.6149 -3.3895 28 6 8.6547 -8.4088 -1.4433 29 7 3.2322 -3.8154 -0.9277 30 1 -0.4850 0.8401 -0.0004 31 1 0.6246 -2.5571 -0.8896 32 1 0.6240 -2.5567 0.8903 33 1 1.5774 -4.7527 1.7365 34 1 3.5474 -6.3498 1.0621 35 1 5.3181 -5.0252 -2.0668 36 1 6.9369 -6.6944 -2.2736 37 1 5.3728 -9.4614 -1.3286 38 1 6.8098 -10.4846 -1.1125 39 1 6.1859 -8.7583 -3.5575 40 1 6.0946 -10.5374 -3.4723 41 1 8.2785 -10.9195 -5.1135 42 1 7.8254 -9.2127 -5.4158 43 1 10.5347 -10.3823 -4.7215 44 1 10.1474 -8.9441 -5.7145 45 1 10.4656 -7.6040 -3.8591 46 1 10.7775 -9.0504 -2.8488 47 1 9.1319 -9.2953 -1.0255 48 1 9.1702 -7.5127 -1.0980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000365647139.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:35 Heat of formation + Delta-G solvation = 40.883625 kcal Electronic energy + Delta-G solvation = -28419.389726 eV Core-core repulsion = 24510.146163 eV Total energy + Delta-G solvation = -3909.243563 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.27217 -41.52133 -40.33421 -37.08284 -36.07685 -35.28484 -34.02065 -33.01080 -32.13480 -30.92176 -29.98491 -28.59079 -27.96131 -25.12789 -24.10562 -23.50153 -22.52720 -22.06670 -21.70477 -21.25801 -20.22042 -19.22796 -18.68176 -18.19515 -17.26652 -16.87445 -16.76739 -16.48521 -16.30171 -15.96575 -15.87292 -15.53525 -15.37117 -14.97279 -14.49561 -14.26429 -14.25421 -13.91678 -13.79551 -13.64019 -13.50315 -13.34782 -12.94601 -12.74751 -12.69286 -12.34004 -12.29142 -12.16065 -12.07258 -11.93362 -11.64126 -11.56878 -11.41560 -11.38467 -11.29601 -11.09637 -10.72276 -10.19286 -9.72146 -9.36232 -9.04764 -8.32648 -6.46860 1.07958 1.15311 1.38041 1.38702 1.50367 1.71684 2.12313 2.36084 2.42287 2.98665 3.00496 3.15859 3.56796 3.65235 3.97115 3.97878 4.02340 4.10142 4.19730 4.28443 4.32548 4.33861 4.45226 4.66816 4.68204 4.76612 4.80366 4.86366 4.89037 4.95249 4.95814 4.98044 5.02373 5.04596 5.10551 5.12221 5.17361 5.22623 5.33913 5.36492 5.55816 5.58398 5.76243 5.87987 5.98201 5.99051 6.23450 6.29909 6.63779 6.75650 7.14978 7.22964 7.44371 8.74739 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.020808 B = 0.002123 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.319820 B =13183.373260 C =13860.254154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.017 3.983 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.546 4.546 8 H 0.052 0.948 9 C 0.273 3.727 10 N -0.345 5.345 11 C 0.056 3.944 12 C -0.292 4.292 13 C 0.285 3.715 14 N -0.638 5.638 15 C 0.713 3.287 16 O -0.598 6.598 17 N -0.719 5.719 18 C 0.165 3.835 19 H 0.079 0.921 20 C -0.120 4.120 21 C 0.061 3.939 22 N -0.528 5.528 23 C 0.037 3.963 24 C -0.119 4.119 25 C -0.114 4.114 26 C 0.058 3.942 27 H 0.048 0.952 28 C -0.103 4.103 29 N -0.349 5.349 30 H 0.272 0.728 31 H 0.021 0.979 32 H 0.059 0.941 33 H 0.201 0.799 34 H 0.167 0.833 35 H 0.418 0.582 36 H 0.406 0.594 37 H 0.053 0.947 38 H 0.087 0.913 39 H 0.027 0.973 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.036 0.964 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.097 0.903 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.711 -20.626 -7.952 30.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.585 4.585 8 H 0.070 0.930 9 C 0.154 3.846 10 N -0.127 5.127 11 C -0.093 4.093 12 C -0.323 4.323 13 C 0.030 3.970 14 N -0.290 5.290 15 C 0.412 3.588 16 O -0.476 6.476 17 N -0.376 5.376 18 C 0.061 3.939 19 H 0.097 0.903 20 C -0.159 4.159 21 C -0.068 4.068 22 N -0.253 5.253 23 C -0.091 4.091 24 C -0.157 4.157 25 C -0.152 4.152 26 C -0.050 4.050 27 H 0.065 0.935 28 C -0.141 4.141 29 N -0.180 5.180 30 H 0.082 0.918 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.217 0.783 34 H 0.184 0.816 35 H 0.255 0.745 36 H 0.243 0.757 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.045 0.955 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.055 0.945 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.115 0.885 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 20.166 -20.450 -7.608 29.711 hybrid contribution -0.303 1.375 -0.704 1.575 sum 19.862 -19.075 -8.312 28.765 Atomic orbital electron populations 1.69997 1.07201 1.28747 1.49983 1.25753 0.95870 1.02752 0.93939 0.85340 0.78356 0.78115 0.78550 1.19776 1.19677 1.19745 1.21396 0.93354 0.90970 1.52735 0.92985 1.19331 0.85681 0.81531 0.98072 1.48808 1.23921 1.20387 1.19610 1.23156 1.00532 0.88847 0.96737 1.21683 1.02141 1.06464 1.02051 1.19080 0.90827 0.92958 0.94177 1.41427 1.30452 1.25510 1.31600 1.15811 0.80718 0.79481 0.82779 1.90832 1.65356 1.63184 1.28210 1.45210 1.32156 1.27844 1.32426 1.20813 0.92513 0.81338 0.99247 0.90265 1.21917 0.99998 0.98776 0.95190 1.21908 0.88612 1.00382 0.95864 1.63940 1.09977 1.33679 1.17751 1.22901 0.96460 1.01457 0.88243 1.22531 0.94794 1.00087 0.98280 1.22155 0.95235 1.00475 0.97361 1.22475 0.95992 0.91032 0.95481 0.93461 1.21536 0.93588 1.04397 0.94617 1.77236 1.04937 1.18218 1.17599 0.91848 0.96123 0.92359 0.78264 0.81579 0.74473 0.75704 0.92860 0.89487 0.95483 0.90581 0.90038 0.94524 0.90580 0.90570 0.90297 0.90277 0.88452 0.89556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.44 13.29 21.45 0.28 -52.15 16 2 C 0.02 0.95 5.46 84.65 0.46 1.42 16 3 Si 0.97 43.80 29.54 68.60 2.03 45.82 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.55 -31.09 9.24 25.60 0.24 -30.85 16 8 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 9 C 0.27 14.32 6.26 85.63 0.54 14.85 16 10 N -0.35 -16.49 3.67 -351.83 -1.29 -17.78 16 11 C 0.06 2.25 11.44 83.52 0.96 3.20 16 12 C -0.29 -11.73 9.61 22.11 0.21 -11.52 16 13 C 0.29 11.60 8.11 133.32 1.08 12.68 16 14 N -0.64 -19.63 5.45 -321.23 -1.75 -21.38 16 15 C 0.71 20.26 8.49 179.05 1.52 21.79 16 16 O -0.60 -21.11 13.12 -4.00 -0.05 -21.16 16 17 N -0.72 -13.51 4.62 -459.15 -2.12 -15.63 16 18 C 0.17 2.77 2.74 44.71 0.12 2.89 16 19 H 0.08 1.63 7.54 -2.39 -0.02 1.61 16 20 C -0.12 -2.06 5.67 30.74 0.17 -1.88 16 21 C 0.06 0.93 5.73 86.75 0.50 1.43 16 22 N -0.53 -7.00 4.85 -864.20 -4.19 -11.18 16 23 C 0.04 0.42 6.71 87.02 0.58 1.00 16 24 C -0.12 -1.01 7.05 32.02 0.23 -0.78 16 25 C -0.11 -0.97 6.66 31.36 0.21 -0.76 16 26 C 0.06 0.64 2.38 44.40 0.11 0.75 16 27 H 0.05 0.54 6.41 -2.39 -0.02 0.52 16 28 C -0.10 -1.17 5.21 30.13 0.16 -1.02 16 29 N -0.35 -16.45 12.42 -54.44 -0.68 -17.13 16 30 H 0.27 14.50 8.31 -92.70 -0.77 13.73 16 31 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 2.99 8.07 -2.39 -0.02 2.97 16 33 H 0.20 6.38 8.06 -2.91 -0.02 6.36 16 34 H 0.17 6.52 5.91 -2.91 -0.02 6.50 16 35 H 0.42 10.35 8.84 -92.70 -0.82 9.53 16 36 H 0.41 5.64 6.99 -92.71 -0.65 4.99 16 37 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.03 0.45 7.80 -2.39 -0.02 0.44 16 40 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 45 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 46 H 0.08 0.64 8.02 -2.39 -0.02 0.62 16 47 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -70.04 382.32 -1.17 -71.21 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: -0.48 Total: 26.18 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: 7.08 Total: 13.21 kcal Atomic # 7 Polarization: -125.51 SS G_CDS: -9.74 Total: -135.26 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.05 Total: -21.16 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -70.04 -1.17 -71.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365647139.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.094 kcal (2) G-P(sol) polarization free energy of solvation -70.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds