Wall clock time and date at job start Tue Mar 31 2020 18:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99914 * 2 1 4 4 H 1.48502 * 109.47231 * 269.99899 * 3 2 1 5 5 H 1.48495 * 109.47189 * 30.00191 * 3 2 1 6 6 H 1.48500 * 109.46982 * 150.00358 * 3 2 1 7 7 C 1.37876 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99950 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99947 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.46754 * 180.02562 * 9 7 2 11 11 C 1.34967 * 125.97178 * 125.00128 * 10 9 7 12 12 C 1.35249 * 107.85669 * 179.97438 * 11 10 9 13 13 C 1.40396 * 107.86728 * 0.02562 * 12 11 10 14 14 N 1.40197 * 125.97086 * 179.97438 * 13 12 11 15 15 C 1.34767 * 120.00200 * 359.97438 * 14 13 12 16 16 O 1.21594 * 119.99834 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00395 * 180.02562 * 15 14 13 18 18 C 1.46500 * 120.00625 * 180.02562 * 17 15 14 19 19 H 1.09002 * 109.23885 * 324.45778 * 18 17 15 20 20 C 1.52822 * 109.22027 * 83.89496 * 18 17 15 21 21 C 1.53619 * 110.70352 * 174.01967 * 20 18 17 22 22 N 1.45670 * 107.80794 * 302.63057 * 21 20 18 23 23 C 1.47092 * 116.53259 * 182.65865 * 22 21 20 24 24 C 1.55189 * 103.52859 * 197.59046 * 23 22 21 25 25 C 1.54999 * 104.92944 * 23.99552 * 24 23 22 26 26 C 1.48726 * 109.33542 * 65.54441 * 22 21 20 27 27 H 1.08996 * 110.34010 * 50.48373 * 26 22 21 28 28 C 1.52244 * 107.51233 * 290.19840 * 26 22 21 29 29 N 1.31204 * 108.05624 * 0.25669 * 13 12 11 30 30 H 0.97004 * 119.99941 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.47293 * 60.00225 * 9 7 2 32 32 H 1.08998 * 109.46845 * 300.00199 * 9 7 2 33 33 H 1.08004 * 126.07527 * 359.97438 * 11 10 9 34 34 H 1.08003 * 126.06485 * 179.97438 * 12 11 10 35 35 H 0.97004 * 119.99901 * 179.97438 * 14 13 12 36 36 H 0.97004 * 119.99705 * 359.97438 * 17 15 14 37 37 H 1.08997 * 109.23142 * 294.34407 * 20 18 17 38 38 H 1.09008 * 109.22478 * 53.75321 * 20 18 17 39 39 H 1.08998 * 109.79543 * 183.05112 * 21 20 18 40 40 H 1.09008 * 109.79117 * 62.20626 * 21 20 18 41 41 H 1.09004 * 110.61227 * 316.10070 * 23 22 21 42 42 H 1.09008 * 110.61141 * 79.08214 * 23 22 21 43 43 H 1.09004 * 110.34878 * 265.13579 * 24 23 22 44 44 H 1.08997 * 110.44256 * 142.90025 * 24 23 22 45 45 H 1.09004 * 110.48377 * 243.82023 * 25 24 23 46 46 H 1.09002 * 110.48554 * 121.17184 * 25 24 23 47 47 H 1.08996 * 109.84108 * 182.43179 * 28 26 22 48 48 H 1.09001 * 109.83826 * 303.40403 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.2421 -4.6223 0.8942 12 6 3.2605 -5.4428 0.5494 13 6 3.8687 -4.9147 -0.6005 14 7 4.9649 -5.4656 -1.2790 15 6 5.5297 -6.6053 -0.8337 16 8 5.0882 -7.1561 0.1564 17 7 6.5839 -7.1345 -1.4856 18 6 7.1976 -8.3738 -1.0019 19 1 7.1665 -8.3885 0.0876 20 6 6.4140 -9.5683 -1.5445 21 6 7.1135 -10.8869 -1.1813 22 7 8.4663 -10.8365 -1.7193 23 6 9.2933 -12.0383 -1.5318 24 6 10.7381 -11.5263 -1.7741 25 6 10.6787 -10.0067 -1.4746 26 6 9.2334 -9.7689 -1.0237 27 1 9.1415 -9.8792 0.0568 28 6 8.6608 -8.4300 -1.4677 29 7 3.2358 -3.8124 -0.9256 30 1 -0.4850 0.8401 0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6247 -2.5570 0.8897 33 1 1.5781 -4.7521 1.7361 34 1 3.5542 -6.3439 1.0673 35 1 5.3169 -5.0263 -2.0690 36 1 6.9359 -6.6953 -2.2757 37 1 5.4113 -9.5641 -1.1170 38 1 6.3421 -9.4877 -2.6292 39 1 6.5725 -11.7250 -1.6207 40 1 7.1512 -10.9985 -0.0976 41 1 9.1874 -12.4224 -0.5172 42 1 9.0297 -12.8033 -2.2622 43 1 11.0321 -11.6973 -2.8098 44 1 11.4353 -12.0191 -1.0966 45 1 10.8971 -9.4317 -2.3746 46 1 11.3748 -9.7476 -0.6769 47 1 9.2256 -7.6167 -1.0119 48 1 8.7065 -8.3500 -2.5538 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000365647140.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:38 Heat of formation + Delta-G solvation = 37.620042 kcal Electronic energy + Delta-G solvation = -27991.087649 eV Core-core repulsion = 24081.702567 eV Total energy + Delta-G solvation = -3909.385082 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.23638 -41.33674 -40.43320 -37.08093 -36.06746 -35.28255 -34.20222 -32.99496 -32.24023 -30.92188 -29.87644 -28.60915 -27.77391 -25.10736 -24.10533 -23.46315 -22.36103 -21.91089 -21.49959 -21.38306 -20.79746 -19.14072 -18.68029 -18.21365 -17.28637 -16.92206 -16.63565 -16.45018 -16.19893 -16.08685 -15.96554 -15.54112 -15.43706 -14.84452 -14.51640 -14.37606 -14.21997 -13.89262 -13.79174 -13.64370 -13.58449 -13.32124 -12.93376 -12.73827 -12.50033 -12.29889 -12.24938 -12.18109 -12.07289 -11.93536 -11.66470 -11.61243 -11.52554 -11.37449 -11.34534 -11.08476 -10.71550 -10.17461 -9.71459 -9.39876 -9.04322 -8.31988 -6.46181 1.08008 1.15016 1.38641 1.39434 1.50959 1.71481 2.11861 2.36616 2.42371 2.99375 3.00537 3.14162 3.54735 3.71155 3.92835 3.97117 4.01967 4.11346 4.24113 4.29125 4.33399 4.37140 4.44291 4.49724 4.70376 4.75818 4.80120 4.83639 4.88105 4.91896 4.95955 4.99366 5.02939 5.03655 5.10802 5.13445 5.15820 5.23950 5.34581 5.35598 5.54473 5.57903 5.77926 5.90197 5.97296 5.99015 6.22794 6.30339 6.64685 6.78557 7.16686 7.23661 7.45330 8.75396 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.030922 B = 0.001871 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.277753 B =14959.145976 C =15587.211875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.018 3.982 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.547 4.547 8 H 0.052 0.948 9 C 0.272 3.728 10 N -0.345 5.345 11 C 0.056 3.944 12 C -0.293 4.293 13 C 0.285 3.715 14 N -0.637 5.637 15 C 0.712 3.288 16 O -0.601 6.601 17 N -0.718 5.718 18 C 0.168 3.832 19 H 0.064 0.936 20 C -0.120 4.120 21 C 0.062 3.938 22 N -0.532 5.532 23 C 0.037 3.963 24 C -0.119 4.119 25 C -0.113 4.113 26 C 0.062 3.938 27 H 0.046 0.954 28 C -0.102 4.102 29 N -0.348 5.348 30 H 0.272 0.728 31 H 0.021 0.979 32 H 0.058 0.942 33 H 0.200 0.800 34 H 0.166 0.834 35 H 0.421 0.579 36 H 0.414 0.586 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.031 0.969 41 H 0.039 0.961 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.084 0.916 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.868 -23.308 -4.251 32.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.585 4.585 8 H 0.071 0.929 9 C 0.153 3.847 10 N -0.127 5.127 11 C -0.093 4.093 12 C -0.324 4.324 13 C 0.029 3.971 14 N -0.288 5.288 15 C 0.412 3.588 16 O -0.479 6.479 17 N -0.373 5.373 18 C 0.063 3.937 19 H 0.083 0.917 20 C -0.159 4.159 21 C -0.067 4.067 22 N -0.257 5.257 23 C -0.090 4.090 24 C -0.157 4.157 25 C -0.151 4.151 26 C -0.047 4.047 27 H 0.064 0.936 28 C -0.140 4.140 29 N -0.179 5.179 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.217 0.783 34 H 0.183 0.817 35 H 0.258 0.742 36 H 0.251 0.749 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.049 0.951 41 H 0.057 0.943 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.097 0.903 47 H 0.103 0.897 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 21.081 -22.579 -4.725 31.249 hybrid contribution 0.072 0.510 0.756 0.915 sum 21.153 -22.068 -3.968 30.825 Atomic orbital electron populations 1.69998 1.07199 1.28736 1.49980 1.25748 0.95860 1.02733 0.93922 0.85337 0.78339 0.78114 0.78548 1.19770 1.19699 1.19769 1.21403 0.93384 0.90974 1.52755 0.92946 1.19336 0.85689 0.81534 0.98095 1.48812 1.23719 1.20351 1.19811 1.23149 1.00473 0.88958 0.96690 1.21676 1.02197 1.06631 1.01920 1.19081 0.90919 0.92900 0.94155 1.41399 1.30394 1.25464 1.31587 1.15815 0.80718 0.79540 0.82771 1.90832 1.65440 1.63267 1.28370 1.44995 1.32113 1.27620 1.32603 1.20960 0.92536 0.81623 0.98573 0.91748 1.21915 0.98428 0.93570 1.01996 1.21894 0.89837 0.97712 0.97219 1.63968 1.01492 1.05799 1.54436 1.22912 0.93407 0.92688 1.00020 1.22543 0.95228 0.95204 1.02729 1.22152 0.94024 0.96719 1.02217 1.22409 0.94352 0.91728 0.96206 0.93552 1.21735 0.92151 0.97069 1.03027 1.77239 1.04873 1.17944 1.17826 0.91860 0.96060 0.92377 0.78288 0.81685 0.74213 0.74904 0.92895 0.90641 0.89853 0.95067 0.94260 0.89782 0.90528 0.90364 0.90208 0.90282 0.89708 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.45 13.29 21.45 0.28 -52.16 16 2 C 0.02 0.98 5.46 84.65 0.46 1.44 16 3 Si 0.97 43.84 29.54 68.60 2.03 45.87 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.55 -31.15 9.23 25.60 0.24 -30.92 16 8 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 9 C 0.27 14.31 6.26 85.63 0.54 14.85 16 10 N -0.34 -16.50 3.67 -351.84 -1.29 -17.79 16 11 C 0.06 2.26 11.44 83.52 0.96 3.21 16 12 C -0.29 -11.83 9.61 22.11 0.21 -11.62 16 13 C 0.29 11.64 8.11 133.31 1.08 12.72 16 14 N -0.64 -19.58 5.45 -321.25 -1.75 -21.33 16 15 C 0.71 20.47 8.48 179.06 1.52 21.98 16 16 O -0.60 -21.58 13.13 -4.01 -0.05 -21.64 16 17 N -0.72 -13.51 5.07 -457.03 -2.32 -15.83 16 18 C 0.17 2.95 2.50 45.16 0.11 3.06 16 19 H 0.06 1.45 7.58 -2.39 -0.02 1.43 16 20 C -0.12 -2.15 5.59 30.74 0.17 -1.98 16 21 C 0.06 0.96 5.87 86.74 0.51 1.47 16 22 N -0.53 -7.24 4.84 -864.16 -4.18 -11.42 16 23 C 0.04 0.41 6.71 87.02 0.58 0.99 16 24 C -0.12 -0.97 7.05 32.03 0.23 -0.74 16 25 C -0.11 -0.99 6.65 31.36 0.21 -0.78 16 26 C 0.06 0.75 2.50 44.40 0.11 0.86 16 27 H 0.05 0.65 7.97 -2.39 -0.02 0.63 16 28 C -0.10 -1.21 5.10 30.57 0.16 -1.05 16 29 N -0.35 -16.43 12.42 -54.44 -0.68 -17.10 16 30 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 31 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 2.98 8.07 -2.39 -0.02 2.96 16 33 H 0.20 6.40 8.06 -2.91 -0.02 6.38 16 34 H 0.17 6.54 5.91 -2.91 -0.02 6.52 16 35 H 0.42 10.24 8.84 -92.71 -0.82 9.42 16 36 H 0.41 5.14 8.61 -92.71 -0.80 4.34 16 37 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.03 0.52 7.98 -2.38 -0.02 0.50 16 41 H 0.04 0.44 8.14 -2.38 -0.02 0.42 16 42 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 43 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.08 0.65 8.00 -2.39 -0.02 0.63 16 46 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -71.07 385.98 -1.52 -72.59 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: -0.64 Total: 25.31 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: 7.08 Total: 13.50 kcal Atomic # 7 Polarization: -125.70 SS G_CDS: -9.94 Total: -135.64 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.05 Total: -21.64 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -71.07 -1.52 -72.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365647140.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.209 kcal (2) G-P(sol) polarization free energy of solvation -71.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds