Wall clock time and date at job start Tue Mar 31 2020 18:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48502 * 109.47002 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47091 * 299.99648 * 3 2 1 6 6 H 1.48497 * 109.47138 * 60.00475 * 3 2 1 7 7 C 1.37882 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99751 * 175.14207 * 7 2 1 9 9 C 1.50694 * 120.00284 * 355.41947 * 7 2 1 10 10 C 1.53006 * 115.55031 * 274.93190 * 9 7 2 11 11 N 1.46498 * 109.46847 * 294.81434 * 10 9 7 12 12 C 1.34777 * 119.99966 * 184.79711 * 11 10 9 13 13 O 1.21578 * 120.00188 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99704 * 180.02562 * 12 11 10 15 15 C 1.46497 * 119.99719 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47293 * 179.97438 * 15 14 12 17 17 N 1.30682 * 126.43365 * 90.02189 * 16 15 14 18 18 N 1.28749 * 109.70070 * 179.64706 * 17 16 15 19 19 C 1.30254 * 109.54196 * 359.82501 * 18 17 16 20 20 N 1.35140 * 126.42996 * 269.71442 * 16 15 14 21 21 C 1.46327 * 127.22041 * 2.00925 * 20 16 15 22 22 C 1.53126 * 109.26810 * 206.97957 * 21 20 16 23 23 C 1.52794 * 109.71714 * 270.55446 * 22 21 20 24 24 C 1.52565 * 110.50838 * 61.41998 * 23 22 21 25 25 C 1.50666 * 127.18517 * 180.87871 * 19 18 17 26 26 C 1.53003 * 117.49968 * 129.25877 * 9 7 2 27 27 C 1.52998 * 117.49915 * 60.59573 * 9 7 2 28 28 H 0.97001 * 119.99858 * 4.99879 * 1 2 3 29 29 H 1.08993 * 109.46787 * 54.81179 * 10 9 7 30 30 H 1.09000 * 109.46942 * 174.81567 * 10 9 7 31 31 H 0.97009 * 120.00281 * 4.79101 * 11 10 9 32 32 H 0.96996 * 120.00344 * 359.97438 * 14 12 11 33 33 H 1.08996 * 109.47160 * 299.99923 * 15 14 12 34 34 H 1.09003 * 109.47395 * 59.99840 * 15 14 12 35 35 H 1.09000 * 109.72081 * 86.93677 * 21 20 16 36 36 H 1.09003 * 109.38111 * 326.82367 * 21 20 16 37 37 H 1.09004 * 109.42857 * 150.47885 * 22 21 20 38 38 H 1.08996 * 109.38529 * 30.60958 * 22 21 20 39 39 H 1.09000 * 109.27089 * 301.14936 * 23 22 21 40 40 H 1.09005 * 109.26604 * 181.68199 * 23 22 21 41 41 H 1.09005 * 109.45639 * 273.39725 * 24 23 22 42 42 H 1.08996 * 109.45769 * 153.45857 * 24 23 22 43 43 H 1.09005 * 109.53976 * 346.68147 * 25 19 18 44 44 H 1.09005 * 109.53771 * 106.84480 * 25 19 18 45 45 H 1.08997 * 117.49622 * 359.97438 * 26 9 7 46 46 H 1.09000 * 117.49928 * 145.02150 * 26 9 7 47 47 H 1.08996 * 117.50254 * 214.97905 * 27 9 7 48 48 H 1.09005 * 117.49689 * 359.97438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0817 -1.1958 -0.0787 9 6 1.2547 -2.4970 0.1053 10 6 0.9188 -2.9527 1.5268 11 7 2.1580 -3.2462 2.2511 12 6 2.1054 -3.7588 3.4965 13 8 1.0296 -3.9780 4.0187 14 7 3.2454 -4.0284 4.1629 15 6 3.1882 -4.5851 5.5168 16 6 4.5883 -4.7930 6.0340 17 7 5.3060 -3.9278 6.7004 18 7 6.4499 -4.4434 6.9890 19 6 6.5101 -5.6584 6.5235 20 7 5.3352 -5.9114 5.9008 21 6 4.9699 -7.1411 5.1969 22 6 5.7225 -8.3213 5.8176 23 6 7.0660 -8.5040 5.1132 24 6 7.9328 -7.2602 5.2844 25 6 7.6571 -6.6269 6.6516 26 6 1.5731 -3.5804 -0.9271 27 6 0.2453 -2.8219 -0.9976 28 1 -0.4850 0.8369 -0.0732 29 1 0.3751 -2.1615 2.0429 30 1 0.3015 -3.8500 1.4844 31 1 3.0164 -3.0718 1.8343 32 1 4.1037 -3.8539 3.7462 33 1 2.6575 -3.8940 6.1716 34 1 2.6637 -5.5403 5.4951 35 1 5.2352 -7.0544 4.1432 36 1 3.8963 -7.3053 5.2891 37 1 5.1286 -9.2286 5.7069 38 1 5.8918 -8.1258 6.8765 39 1 6.8944 -8.6794 4.0512 40 1 7.5822 -9.3637 5.5404 41 1 7.6978 -6.5428 4.4981 42 1 8.9845 -7.5387 5.2188 43 1 8.5459 -6.0963 6.9933 44 1 7.3986 -7.4052 7.3696 45 1 2.3246 -3.3505 -1.6824 46 1 1.5429 -4.6178 -0.5937 47 1 -0.6578 -3.3606 -0.7106 48 1 0.1233 -2.0929 -1.7988 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000369783625.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:13 Heat of formation + Delta-G solvation = 67.098585 kcal Electronic energy + Delta-G solvation = -28639.846721 eV Core-core repulsion = 24731.739925 eV Total energy + Delta-G solvation = -3908.106797 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.59361 -39.48589 -38.25096 -36.84296 -35.29182 -34.07561 -33.31561 -32.12101 -31.95459 -30.46987 -27.64658 -26.59112 -25.82204 -25.14605 -24.67124 -21.53850 -21.19592 -20.90213 -20.55025 -20.42699 -19.41775 -18.03107 -17.29633 -16.76398 -16.43310 -15.85623 -15.59042 -15.47115 -15.22293 -14.73113 -14.61659 -14.30521 -14.06726 -13.77450 -13.51007 -13.41619 -13.32802 -12.96843 -12.65217 -12.58261 -12.30453 -11.85249 -11.79633 -11.57886 -11.53508 -11.42672 -11.17186 -10.99151 -10.94597 -10.51282 -10.47887 -10.38908 -10.25701 -9.90740 -9.51702 -9.28789 -9.07469 -9.01144 -8.49185 -8.26645 -8.04896 -6.07454 -4.17237 1.41383 2.12213 2.54017 3.24891 3.26390 3.36137 3.37562 3.67060 3.79676 3.92273 3.99576 4.04355 4.21843 4.35903 4.48971 4.55888 4.58938 4.71769 4.77657 4.94265 5.05916 5.10338 5.19748 5.20847 5.24111 5.35406 5.42859 5.48673 5.54748 5.62280 5.67514 5.72747 5.89513 6.00741 6.32435 6.44618 6.49570 6.55535 6.56954 6.67947 6.81371 7.10421 7.23321 7.37730 7.40214 7.56682 7.81454 8.33331 8.51477 8.54239 8.84124 9.07850 9.50338 10.99711 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015171 B = 0.002566 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.224960 B =10910.360750 C =11389.470885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.500 4.500 8 H 0.060 0.940 9 C 0.024 3.976 10 C 0.182 3.818 11 N -0.717 5.717 12 C 0.702 3.298 13 O -0.600 6.600 14 N -0.751 5.751 15 C 0.234 3.766 16 C 0.158 3.842 17 N -0.272 5.272 18 N -0.293 5.293 19 C 0.181 3.819 20 N -0.459 5.459 21 C 0.100 3.900 22 C -0.140 4.140 23 C -0.125 4.125 24 C -0.125 4.125 25 C -0.036 4.036 26 C -0.211 4.211 27 C -0.141 4.141 28 H 0.261 0.739 29 H 0.066 0.934 30 H 0.039 0.961 31 H 0.397 0.603 32 H 0.396 0.604 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.093 0.907 45 H 0.077 0.923 46 H 0.064 0.936 47 H 0.064 0.936 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.139 -19.861 9.985 26.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.538 4.538 8 H 0.078 0.922 9 C 0.024 3.976 10 C 0.058 3.942 11 N -0.370 5.370 12 C 0.402 3.598 13 O -0.480 6.480 14 N -0.410 5.410 15 C 0.107 3.893 16 C -0.109 4.109 17 N -0.113 5.113 18 N -0.133 5.133 19 C -0.086 4.086 20 N -0.150 5.150 21 C -0.022 4.022 22 C -0.178 4.178 23 C -0.162 4.162 24 C -0.163 4.163 25 C -0.075 4.075 26 C -0.248 4.248 27 C -0.179 4.179 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.231 0.769 32 H 0.229 0.771 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.100 0.900 43 H 0.119 0.881 44 H 0.111 0.889 45 H 0.095 0.905 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 13.306 -18.656 11.205 25.508 hybrid contribution 0.768 0.030 -1.128 1.365 sum 14.074 -18.627 10.076 25.428 Atomic orbital electron populations 1.69997 1.05869 1.26796 1.48337 1.24985 0.94827 0.98987 0.94260 0.86576 0.80161 0.83840 0.77652 1.19746 1.21061 1.20864 1.20374 0.92615 0.88584 1.52193 0.92233 1.19054 0.99382 0.93280 0.85919 1.20890 0.83091 0.97794 0.92393 1.45162 1.11453 1.66330 1.14017 1.15926 0.83441 0.78806 0.81640 1.90888 1.27609 1.60581 1.68886 1.45018 1.08299 1.71440 1.16212 1.19157 0.85779 1.00567 0.83792 1.24699 0.97928 0.84660 1.03603 1.74442 0.99042 1.24188 1.13658 1.74286 1.13080 1.05109 1.20864 1.24703 0.89185 0.96241 0.98491 1.46100 1.13297 1.14400 1.41216 1.22115 1.01813 0.81295 0.96995 1.22029 0.97016 0.97473 1.01259 1.21614 0.94943 0.98322 1.01372 1.21628 1.01004 0.97320 0.96350 1.20222 0.93313 0.95153 0.98840 1.23011 1.00745 0.95539 1.05551 1.22466 0.90764 1.01283 1.03419 0.92901 0.91562 0.94308 0.76910 0.77063 0.88115 0.90042 0.88839 0.88242 0.89192 0.90068 0.91025 0.90826 0.91471 0.90036 0.88111 0.88935 0.90469 0.91794 0.91784 0.89499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.24 12.65 55.43 0.70 -23.54 16 2 C 0.07 1.96 5.43 -17.82 -0.10 1.86 16 3 Si 0.89 20.80 29.54 -169.99 -5.02 15.77 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.50 -12.82 8.59 -34.44 -0.30 -13.11 16 8 H 0.06 1.51 7.82 -52.48 -0.41 1.10 16 9 C 0.02 0.57 1.47 -155.66 -0.23 0.34 16 10 C 0.18 4.07 5.50 -4.04 -0.02 4.05 16 11 N -0.72 -13.70 5.48 -65.23 -0.36 -14.06 16 12 C 0.70 12.92 8.57 -86.91 -0.74 12.18 16 13 O -0.60 -13.16 16.34 5.30 0.09 -13.08 16 14 N -0.75 -10.56 5.55 -66.42 -0.37 -10.92 16 15 C 0.23 2.93 6.02 -5.20 -0.03 2.90 16 16 C 0.16 1.96 7.41 -155.18 -1.15 0.81 16 17 N -0.27 -4.19 12.22 32.76 0.40 -3.79 16 18 N -0.29 -4.21 12.22 32.72 0.40 -3.81 16 19 C 0.18 1.88 6.92 -155.35 -1.08 0.80 16 20 N -0.46 -4.38 3.05 -110.89 -0.34 -4.72 16 21 C 0.10 0.61 6.27 -4.07 -0.03 0.58 16 22 C -0.14 -0.55 5.55 -26.77 -0.15 -0.69 16 23 C -0.13 -0.42 5.67 -27.06 -0.15 -0.57 16 24 C -0.12 -0.57 5.68 -26.87 -0.15 -0.73 16 25 C -0.04 -0.22 5.55 -27.81 -0.15 -0.37 16 26 C -0.21 -4.31 9.96 -26.69 -0.27 -4.58 16 27 C -0.14 -3.20 9.14 -26.69 -0.24 -3.44 16 28 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 29 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 30 H 0.04 0.86 8.09 -51.93 -0.42 0.44 16 31 H 0.40 6.99 8.35 -40.82 -0.34 6.64 16 32 H 0.40 4.99 8.48 -40.82 -0.35 4.64 16 33 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.08 0.90 7.30 -51.93 -0.38 0.52 16 35 H 0.09 0.52 7.82 -51.93 -0.41 0.12 16 36 H 0.10 0.55 7.29 -51.93 -0.38 0.17 16 37 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.08 0.37 5.69 -51.93 -0.30 0.08 16 39 H 0.07 0.23 8.09 -51.93 -0.42 -0.19 16 40 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.07 0.42 7.84 -51.93 -0.41 0.02 16 42 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.09 0.42 6.34 -51.93 -0.33 0.09 16 45 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 46 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 48 H 0.09 2.12 8.14 -51.93 -0.42 1.69 16 LS Contribution 388.96 15.07 5.86 5.86 Total: -1.00 -33.13 388.96 -10.92 -44.05 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -7.50 Total: 8.20 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -4.79 Total: 0.02 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: 0.44 Total: -60.84 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.09 Total: -13.08 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.13 -10.92 -44.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369783625.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.150 kcal (2) G-P(sol) polarization free energy of solvation -33.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds