Wall clock time and date at job start Tue Mar 31 2020 18:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48502 * 109.47002 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47091 * 299.99648 * 3 2 1 6 6 H 1.48497 * 109.47138 * 60.00475 * 3 2 1 7 7 C 1.37882 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99751 * 175.14207 * 7 2 1 9 9 C 1.50694 * 120.00284 * 355.41947 * 7 2 1 10 10 C 1.53006 * 115.55031 * 274.93190 * 9 7 2 11 11 N 1.46498 * 109.46847 * 294.81434 * 10 9 7 12 12 C 1.34777 * 119.99966 * 184.79711 * 11 10 9 13 13 O 1.21578 * 120.00188 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99704 * 180.02562 * 12 11 10 15 15 C 1.46497 * 119.99719 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47293 * 179.97438 * 15 14 12 17 17 N 1.30682 * 126.43365 * 90.02189 * 16 15 14 18 18 N 1.28749 * 109.70070 * 179.64706 * 17 16 15 19 19 C 1.30254 * 109.54196 * 359.82501 * 18 17 16 20 20 N 1.35140 * 126.42996 * 269.71442 * 16 15 14 21 21 C 1.46327 * 127.22041 * 2.00925 * 20 16 15 22 22 C 1.53126 * 109.26810 * 206.97957 * 21 20 16 23 23 C 1.52794 * 109.71714 * 270.55446 * 22 21 20 24 24 C 1.52565 * 110.50838 * 61.41998 * 23 22 21 25 25 C 1.50666 * 127.18517 * 180.87871 * 19 18 17 26 26 C 1.53003 * 117.49968 * 129.25877 * 9 7 2 27 27 C 1.52998 * 117.49915 * 60.59573 * 9 7 2 28 28 H 0.97001 * 119.99858 * 4.99879 * 1 2 3 29 29 H 1.08993 * 109.46787 * 54.81179 * 10 9 7 30 30 H 1.09000 * 109.46942 * 174.81567 * 10 9 7 31 31 H 0.97009 * 120.00281 * 4.79101 * 11 10 9 32 32 H 0.96996 * 120.00344 * 359.97438 * 14 12 11 33 33 H 1.08996 * 109.47160 * 299.99923 * 15 14 12 34 34 H 1.09003 * 109.47395 * 59.99840 * 15 14 12 35 35 H 1.09000 * 109.72081 * 86.93677 * 21 20 16 36 36 H 1.09003 * 109.38111 * 326.82367 * 21 20 16 37 37 H 1.09004 * 109.42857 * 150.47885 * 22 21 20 38 38 H 1.08996 * 109.38529 * 30.60958 * 22 21 20 39 39 H 1.09000 * 109.27089 * 301.14936 * 23 22 21 40 40 H 1.09005 * 109.26604 * 181.68199 * 23 22 21 41 41 H 1.09005 * 109.45639 * 273.39725 * 24 23 22 42 42 H 1.08996 * 109.45769 * 153.45857 * 24 23 22 43 43 H 1.09005 * 109.53976 * 346.68147 * 25 19 18 44 44 H 1.09005 * 109.53771 * 106.84480 * 25 19 18 45 45 H 1.08997 * 117.49622 * 359.97438 * 26 9 7 46 46 H 1.09000 * 117.49928 * 145.02150 * 26 9 7 47 47 H 1.08996 * 117.50254 * 214.97905 * 27 9 7 48 48 H 1.09005 * 117.49689 * 359.97438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0817 -1.1958 -0.0787 9 6 1.2547 -2.4970 0.1053 10 6 0.9188 -2.9527 1.5268 11 7 2.1580 -3.2462 2.2511 12 6 2.1054 -3.7588 3.4965 13 8 1.0296 -3.9780 4.0187 14 7 3.2454 -4.0284 4.1629 15 6 3.1882 -4.5851 5.5168 16 6 4.5883 -4.7930 6.0340 17 7 5.3060 -3.9278 6.7004 18 7 6.4499 -4.4434 6.9890 19 6 6.5101 -5.6584 6.5235 20 7 5.3352 -5.9114 5.9008 21 6 4.9699 -7.1411 5.1969 22 6 5.7225 -8.3213 5.8176 23 6 7.0660 -8.5040 5.1132 24 6 7.9328 -7.2602 5.2844 25 6 7.6571 -6.6269 6.6516 26 6 1.5731 -3.5804 -0.9271 27 6 0.2453 -2.8219 -0.9976 28 1 -0.4850 0.8369 -0.0732 29 1 0.3751 -2.1615 2.0429 30 1 0.3015 -3.8500 1.4844 31 1 3.0164 -3.0718 1.8343 32 1 4.1037 -3.8539 3.7462 33 1 2.6575 -3.8940 6.1716 34 1 2.6637 -5.5403 5.4951 35 1 5.2352 -7.0544 4.1432 36 1 3.8963 -7.3053 5.2891 37 1 5.1286 -9.2286 5.7069 38 1 5.8918 -8.1258 6.8765 39 1 6.8944 -8.6794 4.0512 40 1 7.5822 -9.3637 5.5404 41 1 7.6978 -6.5428 4.4981 42 1 8.9845 -7.5387 5.2188 43 1 8.5459 -6.0963 6.9933 44 1 7.3986 -7.4052 7.3696 45 1 2.3246 -3.3505 -1.6824 46 1 1.5429 -4.6178 -0.5937 47 1 -0.6578 -3.3606 -0.7106 48 1 0.1233 -2.0929 -1.7988 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000369783625.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:12 Heat of formation + Delta-G solvation = 45.965165 kcal Electronic energy + Delta-G solvation = -28640.763135 eV Core-core repulsion = 24731.739925 eV Total energy + Delta-G solvation = -3909.023211 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.46011 -40.98795 -38.74609 -38.58037 -36.41159 -35.04986 -34.84913 -33.94407 -32.78375 -31.31147 -28.76478 -27.71387 -27.17399 -26.40811 -25.59773 -22.94228 -22.41590 -21.89808 -21.62207 -21.24179 -20.90307 -19.45166 -18.34748 -17.89471 -17.53767 -17.12334 -16.76992 -16.53213 -16.24892 -15.98376 -15.72528 -15.51991 -15.40022 -15.01260 -14.61109 -14.34416 -14.25396 -14.22458 -13.81064 -13.58532 -13.41086 -13.03504 -12.92442 -12.91141 -12.86853 -12.43550 -12.34636 -12.05331 -11.99951 -11.93636 -11.53527 -11.50526 -11.30971 -11.25709 -11.07164 -10.93797 -10.46001 -10.39619 -10.26078 -10.02597 -9.67103 -8.09599 -6.22940 0.53001 1.36659 1.39471 1.44701 1.52246 1.54741 1.98067 2.18560 2.41733 2.98032 3.18921 3.28060 3.30615 3.49981 3.62135 3.64482 3.74132 3.93727 4.11046 4.14640 4.25884 4.27169 4.40638 4.46124 4.58258 4.59591 4.68228 4.73517 4.75834 4.78589 4.86998 4.91440 5.00413 5.01171 5.04479 5.09810 5.19699 5.26569 5.31772 5.32110 5.37157 5.58159 5.62384 5.72076 5.79421 5.83011 6.00768 6.37660 6.84700 7.11354 7.46705 7.58815 7.59217 8.97425 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015171 B = 0.002566 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.224960 B =10910.360750 C =11389.470885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.025 3.975 3 Si 0.946 3.054 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.291 1.291 7 C -0.503 4.503 8 H 0.062 0.938 9 C 0.002 3.998 10 C 0.200 3.800 11 N -0.714 5.714 12 C 0.705 3.295 13 O -0.636 6.636 14 N -0.732 5.732 15 C 0.239 3.761 16 C 0.157 3.843 17 N -0.316 5.316 18 N -0.340 5.340 19 C 0.195 3.805 20 N -0.450 5.450 21 C 0.090 3.910 22 C -0.135 4.135 23 C -0.121 4.121 24 C -0.120 4.120 25 C -0.036 4.036 26 C -0.175 4.175 27 C -0.152 4.152 28 H 0.259 0.741 29 H 0.023 0.977 30 H 0.042 0.958 31 H 0.406 0.594 32 H 0.406 0.594 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.047 0.953 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.114 0.886 45 H 0.083 0.917 46 H 0.090 0.910 47 H 0.071 0.929 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.208 -22.580 9.744 29.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.176 4.176 3 Si 0.772 3.228 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.217 1.217 7 C -0.541 4.541 8 H 0.080 0.920 9 C 0.001 3.999 10 C 0.075 3.925 11 N -0.367 5.367 12 C 0.405 3.595 13 O -0.518 6.518 14 N -0.390 5.390 15 C 0.113 3.887 16 C -0.112 4.112 17 N -0.157 5.157 18 N -0.180 5.180 19 C -0.074 4.074 20 N -0.140 5.140 21 C -0.031 4.031 22 C -0.172 4.172 23 C -0.159 4.159 24 C -0.158 4.158 25 C -0.075 4.075 26 C -0.212 4.212 27 C -0.191 4.191 28 H 0.068 0.932 29 H 0.041 0.959 30 H 0.060 0.940 31 H 0.241 0.759 32 H 0.241 0.759 33 H 0.104 0.896 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.066 0.934 42 H 0.117 0.883 43 H 0.121 0.879 44 H 0.132 0.868 45 H 0.102 0.898 46 H 0.109 0.891 47 H 0.089 0.911 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 15.441 -21.401 10.959 28.575 hybrid contribution 0.176 0.793 -1.027 1.309 sum 15.617 -20.609 9.932 27.699 Atomic orbital electron populations 1.70107 1.07099 1.27164 1.49976 1.25661 0.95468 1.01894 0.94528 0.85700 0.79493 0.80492 0.77092 1.18753 1.20839 1.21736 1.20695 0.92879 0.89680 1.50799 0.92033 1.19057 1.00337 0.93865 0.86637 1.20440 0.83985 0.96317 0.91784 1.44936 1.10811 1.66570 1.14350 1.15953 0.83841 0.78420 0.81319 1.90867 1.29320 1.62005 1.69567 1.44802 1.07440 1.70300 1.16423 1.19153 0.86209 1.01014 0.82367 1.24451 0.97701 0.85449 1.03602 1.74329 1.00054 1.26067 1.15286 1.74191 1.13301 1.07333 1.23180 1.25438 0.89962 0.95629 0.96332 1.46274 1.12503 1.14602 1.40663 1.22513 1.02776 0.80544 0.97295 1.22048 0.97429 0.97042 1.00712 1.21615 0.94367 0.98091 1.01777 1.21619 1.02434 0.97332 0.94448 1.20486 0.91705 0.94805 1.00510 1.22993 0.98791 0.95966 1.03452 1.22390 0.92198 1.01779 1.02710 0.93232 0.95885 0.94001 0.75875 0.75922 0.89616 0.87996 0.88070 0.87513 0.87178 0.90538 0.90551 0.89072 0.93371 0.88323 0.87929 0.86762 0.89833 0.89124 0.91062 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.29 12.65 21.45 0.27 -51.01 16 2 C 0.03 1.35 5.43 84.66 0.46 1.81 16 3 Si 0.95 42.96 29.54 68.60 2.03 44.98 16 4 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 7 C -0.50 -25.59 8.59 25.60 0.22 -25.37 16 8 H 0.06 3.04 7.82 -2.91 -0.02 3.02 16 9 C 0.00 0.08 1.47 -52.93 -0.08 0.01 16 10 C 0.20 8.96 5.50 86.38 0.48 9.43 16 11 N -0.71 -26.78 5.48 -478.54 -2.62 -29.40 16 12 C 0.70 25.55 8.57 179.05 1.53 27.09 16 13 O -0.64 -27.87 16.34 -3.96 -0.06 -27.94 16 14 N -0.73 -19.93 5.55 -482.31 -2.68 -22.60 16 15 C 0.24 5.86 6.02 85.63 0.52 6.37 16 16 C 0.16 3.81 7.41 138.04 1.02 4.84 16 17 N -0.32 -9.91 12.22 -50.28 -0.61 -10.52 16 18 N -0.34 -9.85 12.22 -50.39 -0.62 -10.46 16 19 C 0.19 3.84 6.92 138.09 0.96 4.79 16 20 N -0.45 -7.97 3.05 -504.73 -1.54 -9.51 16 21 C 0.09 0.85 6.27 86.45 0.54 1.39 16 22 C -0.13 -0.59 5.55 30.57 0.17 -0.42 16 23 C -0.12 -0.36 5.67 30.38 0.17 -0.19 16 24 C -0.12 -0.77 5.68 30.51 0.17 -0.59 16 25 C -0.04 -0.36 5.55 29.89 0.17 -0.19 16 26 C -0.17 -6.75 9.96 30.62 0.30 -6.44 16 27 C -0.15 -6.85 9.14 30.62 0.28 -6.57 16 28 H 0.26 14.13 8.32 -92.71 -0.77 13.36 16 29 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.04 1.83 8.09 -2.39 -0.02 1.82 16 31 H 0.41 13.74 8.35 -92.70 -0.77 12.97 16 32 H 0.41 9.73 8.48 -92.71 -0.79 8.94 16 33 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.10 2.10 7.30 -2.39 -0.02 2.08 16 35 H 0.10 0.85 7.82 -2.39 -0.02 0.83 16 36 H 0.11 0.88 7.29 -2.39 -0.02 0.87 16 37 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 38 H 0.08 0.45 5.69 -2.39 -0.01 0.43 16 39 H 0.08 0.21 8.09 -2.39 -0.02 0.19 16 40 H 0.09 0.02 8.14 -2.38 -0.02 0.00 16 41 H 0.05 0.51 7.84 -2.38 -0.02 0.49 16 42 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 44 H 0.11 0.69 6.34 -2.38 -0.02 0.68 16 45 H 0.08 3.13 8.14 -2.39 -0.02 3.12 16 46 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 47 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 48 H 0.06 3.14 8.14 -2.38 -0.02 3.12 16 Total: -1.00 -73.54 388.96 0.51 -73.03 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: -0.57 Total: 27.48 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: 6.91 Total: 15.95 kcal Atomic # 7 Polarization: -125.71 SS G_CDS: -7.80 Total: -133.51 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.06 Total: -27.94 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -73.54 0.51 -73.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369783625.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.997 kcal (2) G-P(sol) polarization free energy of solvation -73.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds