Wall clock time and date at job start Tue Mar 31 2020 18:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00098 * 2 1 4 4 H 1.48498 * 109.47011 * 240.00217 * 3 2 1 5 5 H 1.48498 * 109.46776 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46820 * 120.00108 * 3 2 1 7 7 C 1.37873 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00458 * 172.06719 * 7 2 1 9 9 C 1.50702 * 119.99847 * 352.05705 * 7 2 1 10 10 C 1.52994 * 115.55377 * 294.80604 * 9 7 2 11 11 N 1.46502 * 109.47133 * 275.56785 * 10 9 7 12 12 C 1.34771 * 120.00286 * 185.00589 * 11 10 9 13 13 O 1.21586 * 120.00186 * 5.03812 * 12 11 10 14 14 N 1.34775 * 120.00165 * 185.03569 * 12 11 10 15 15 C 1.46926 * 120.63316 * 174.94228 * 14 12 11 16 16 C 1.53188 * 108.77602 * 233.62961 * 15 14 12 17 17 C 1.53046 * 109.31566 * 305.36199 * 16 15 14 18 18 C 1.52992 * 109.46154 * 181.38593 * 17 16 15 19 19 N 1.46505 * 109.47032 * 174.97389 * 18 17 16 20 20 C 1.35312 * 125.86808 * 124.99846 * 19 18 17 21 21 C 1.35352 * 106.17555 * 179.97438 * 20 19 18 22 22 N 1.33772 * 106.49285 * 359.97438 * 21 20 19 23 23 N 1.28633 * 108.89115 * 0.02562 * 22 21 20 24 24 C 1.53037 * 109.52156 * 61.37025 * 17 16 15 25 25 C 1.46930 * 120.63117 * 354.95853 * 14 12 11 26 26 C 1.53005 * 117.51465 * 80.50474 * 9 7 2 27 27 C 1.52997 * 60.00241 * 107.48194 * 26 9 7 28 28 H 0.97005 * 120.00028 * 5.00249 * 1 2 3 29 29 H 1.09003 * 109.47432 * 155.57514 * 10 9 7 30 30 H 1.08996 * 109.47445 * 35.56751 * 10 9 7 31 31 H 0.97002 * 120.00019 * 5.01461 * 11 10 9 32 32 H 1.08997 * 109.59014 * 113.83916 * 15 14 12 33 33 H 1.09005 * 109.70392 * 353.48172 * 15 14 12 34 34 H 1.09005 * 109.49847 * 185.41022 * 16 15 14 35 35 H 1.09007 * 109.50166 * 65.31715 * 16 15 14 36 36 H 1.09002 * 109.45727 * 301.35941 * 17 16 15 37 37 H 1.08997 * 109.47681 * 54.97278 * 18 17 16 38 38 H 1.09008 * 109.47243 * 294.97215 * 18 17 16 39 39 H 1.08004 * 126.91291 * 359.97438 * 20 19 18 40 40 H 1.08001 * 126.75465 * 179.97438 * 21 20 19 41 41 H 1.09000 * 109.49871 * 58.58467 * 24 17 16 42 42 H 1.08999 * 109.49625 * 178.68133 * 24 17 16 43 43 H 1.08993 * 109.59115 * 246.15647 * 25 14 12 44 44 H 1.08994 * 109.58113 * 6.44663 * 25 14 12 45 45 H 1.08994 * 117.49832 * 214.96902 * 26 9 7 46 46 H 1.08993 * 117.50007 * 359.97438 * 26 9 7 47 47 H 1.09000 * 117.50130 * 252.51685 * 27 26 9 48 48 H 1.09001 * 117.52152 * 107.47520 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0767 -1.1985 -0.1296 9 6 1.2618 -2.4929 0.1792 10 6 0.5874 -2.6848 1.5391 11 7 1.5616 -3.2134 2.4971 12 6 1.1671 -3.5579 3.7388 13 8 -0.0113 -3.5169 4.0356 14 7 2.0787 -3.9478 4.6517 15 6 1.6795 -4.2199 6.0393 16 6 2.5605 -3.3894 6.9777 17 6 4.0331 -3.6800 6.6789 18 6 4.9157 -2.8783 7.6375 19 7 6.3189 -3.2461 7.4326 20 6 7.3302 -2.3911 7.1546 21 6 8.4461 -3.1495 7.0465 22 7 8.0679 -4.4145 7.2614 23 7 6.8017 -4.4380 7.4870 24 6 4.3511 -3.2787 5.2367 25 6 3.4906 -4.1084 4.2784 26 6 0.5604 -3.0816 -1.0465 27 6 1.8343 -3.7349 -0.5070 28 1 -0.4850 0.8369 -0.0733 29 1 -0.2405 -3.3867 1.4383 30 1 0.2100 -1.7266 1.8959 31 1 2.4908 -3.3153 2.2377 32 1 1.8120 -5.2798 6.2565 33 1 0.6342 -3.9457 6.1815 34 1 2.3402 -3.6534 8.0121 35 1 2.3600 -2.3293 6.8218 36 1 4.2272 -4.7445 6.8109 37 1 4.6288 -3.0984 8.6657 38 1 4.7874 -1.8131 7.4446 39 1 7.2609 -1.3193 7.0417 40 1 9.4453 -2.8017 6.8294 41 1 4.1335 -2.2198 5.0973 42 1 5.4054 -3.4641 5.0316 43 1 3.7709 -5.1591 4.3520 44 1 3.6400 -3.7610 3.2561 45 1 -0.3815 -3.6056 -0.8841 46 1 0.6356 -2.5292 -1.9831 47 1 2.7480 -3.6123 -1.0886 48 1 1.7309 -4.6885 0.0107 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374029716.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:06 Heat of formation + Delta-G solvation = 97.620920 kcal Electronic energy + Delta-G solvation = -29078.637583 eV Core-core repulsion = 25171.854334 eV Total energy + Delta-G solvation = -3906.783249 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.48456 -40.17270 -38.10472 -36.73000 -35.18631 -33.53952 -32.48406 -32.07923 -31.25548 -31.11042 -28.28946 -26.28149 -25.21546 -24.02852 -23.44086 -22.93544 -21.79503 -21.26089 -20.62205 -19.42016 -19.15395 -17.95619 -17.78090 -16.72877 -16.20445 -15.73059 -15.30128 -15.23957 -14.99006 -14.69428 -14.55009 -14.27404 -14.13971 -13.89491 -13.60663 -13.53397 -13.05947 -12.91231 -12.51950 -12.32435 -12.00461 -11.72258 -11.61852 -11.47820 -11.47113 -11.14943 -11.01826 -10.97406 -10.91682 -10.79916 -10.57711 -10.32738 -10.27559 -9.74899 -9.62866 -9.47481 -9.08331 -8.62970 -8.61368 -8.25055 -7.99651 -6.11623 -4.18547 1.36165 2.06831 2.36413 2.98068 3.22803 3.29562 3.30000 3.65926 3.95519 4.18933 4.23605 4.30953 4.35405 4.44552 4.66046 4.78089 4.80497 4.93481 4.98379 5.03466 5.10950 5.12404 5.27076 5.33114 5.40199 5.48027 5.57557 5.60852 5.64956 5.79635 5.83713 5.91260 5.98834 6.06881 6.28893 6.30873 6.44842 6.59574 6.62355 6.66176 6.86800 7.02622 7.27761 7.31052 7.47465 7.50020 7.80487 8.28292 8.31461 8.51683 8.80681 9.12327 9.46171 10.96060 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011726 B = 0.003080 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.258523 B = 9089.990589 C =10126.375527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.074 3.926 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.501 4.501 8 H 0.060 0.940 9 C 0.035 3.965 10 C 0.180 3.820 11 N -0.726 5.726 12 C 0.702 3.298 13 O -0.598 6.598 14 N -0.636 5.636 15 C 0.134 3.866 16 C -0.127 4.127 17 C -0.099 4.099 18 C 0.118 3.882 19 N -0.285 5.285 20 C -0.050 4.050 21 C -0.054 4.054 22 N -0.275 5.275 23 N -0.083 5.083 24 C -0.130 4.130 25 C 0.116 3.884 26 C -0.164 4.164 27 C -0.209 4.209 28 H 0.263 0.737 29 H 0.039 0.961 30 H 0.077 0.923 31 H 0.392 0.608 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.189 0.811 40 H 0.188 0.812 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.065 0.935 46 H 0.082 0.918 47 H 0.077 0.923 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.154 -4.235 15.425 19.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.539 4.539 8 H 0.078 0.922 9 C 0.034 3.966 10 C 0.057 3.943 11 N -0.380 5.380 12 C 0.404 3.596 13 O -0.478 6.478 14 N -0.375 5.375 15 C 0.010 3.990 16 C -0.166 4.166 17 C -0.118 4.118 18 C -0.003 4.003 19 N -0.079 5.079 20 C -0.201 4.201 21 C -0.212 4.212 22 N -0.141 5.141 23 N -0.063 5.063 24 C -0.169 4.169 25 C -0.008 4.008 26 C -0.202 4.202 27 C -0.246 4.246 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.228 0.772 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.110 0.890 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.206 0.794 40 H 0.205 0.795 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.103 0.897 45 H 0.084 0.916 46 H 0.100 0.900 47 H 0.096 0.904 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.738 -5.519 15.899 19.444 hybrid contribution 1.169 2.255 -0.446 2.579 sum 10.907 -3.264 15.452 19.193 Atomic orbital electron populations 1.69954 1.05890 1.27140 1.47921 1.24976 0.94787 0.98930 0.94384 0.86687 0.79671 0.83210 0.78592 1.20241 1.21202 1.20272 1.20380 0.93146 0.88805 1.51531 0.92235 1.19068 0.97698 0.91347 0.88445 1.20901 0.88425 0.97644 0.87319 1.45507 1.13350 1.67843 1.11348 1.15951 0.84576 0.78072 0.81050 1.90867 1.15551 1.61655 1.79687 1.47250 1.07182 1.73364 1.09720 1.21292 1.00058 0.98306 0.79351 1.21951 0.92828 1.01844 0.99978 1.21485 0.94728 1.01236 0.94357 1.22327 0.74398 1.01577 1.02028 1.47528 1.10026 1.05725 1.44617 1.23735 0.88069 0.99449 1.08838 1.23627 1.00465 0.89775 1.07290 1.75133 1.02950 1.20310 1.15726 1.78289 1.05011 1.03533 1.19504 1.21975 0.99753 1.01204 0.93922 1.21504 0.80838 0.99670 0.98781 1.22705 0.93339 1.03583 1.00583 1.22882 0.97848 0.96985 1.06903 0.92671 0.94260 0.90469 0.77174 0.92012 0.88520 0.90277 0.90809 0.88952 0.88073 0.87455 0.79384 0.79494 0.90779 0.91291 0.91553 0.89729 0.91607 0.89971 0.90433 0.91494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.03 12.60 55.43 0.70 -23.33 16 2 C 0.07 1.93 5.22 -17.82 -0.09 1.83 16 3 Si 0.89 20.23 29.55 -169.99 -5.02 15.21 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.50 -12.82 8.82 -34.44 -0.30 -13.12 16 8 H 0.06 1.50 7.83 -52.49 -0.41 1.09 16 9 C 0.04 0.82 1.32 -155.66 -0.21 0.62 16 10 C 0.18 4.17 5.53 -4.04 -0.02 4.15 16 11 N -0.73 -14.12 5.37 -65.23 -0.35 -14.47 16 12 C 0.70 13.34 8.30 -86.92 -0.72 12.62 16 13 O -0.60 -13.63 15.76 5.29 0.08 -13.55 16 14 N -0.64 -8.92 2.97 -178.50 -0.53 -9.45 16 15 C 0.13 1.51 6.41 -3.71 -0.02 1.49 16 16 C -0.13 -1.01 5.36 -26.61 -0.14 -1.15 16 17 C -0.10 -0.76 2.20 -90.58 -0.20 -0.95 16 18 C 0.12 0.71 5.85 -4.04 -0.02 0.69 16 19 N -0.29 -2.45 2.87 -61.26 -0.18 -2.62 16 20 C -0.05 -0.36 11.57 -17.05 -0.20 -0.56 16 21 C -0.05 -0.48 12.05 -17.74 -0.21 -0.69 16 22 N -0.28 -3.39 12.41 30.24 0.38 -3.01 16 23 N -0.08 -0.98 12.82 60.35 0.77 -0.20 16 24 C -0.13 -1.23 5.26 -26.61 -0.14 -1.37 16 25 C 0.12 1.32 6.43 -3.71 -0.02 1.30 16 26 C -0.16 -3.68 9.88 -26.73 -0.26 -3.94 16 27 C -0.21 -4.25 9.78 -26.73 -0.26 -4.51 16 28 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 29 H 0.04 0.93 7.87 -51.93 -0.41 0.53 16 30 H 0.08 2.05 7.26 -51.93 -0.38 1.68 16 31 H 0.39 6.87 5.87 -40.82 -0.24 6.63 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.10 1.28 7.04 -51.93 -0.37 0.92 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.80 8.00 -51.93 -0.42 0.39 16 37 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.11 0.46 8.07 -51.92 -0.42 0.04 16 39 H 0.19 0.72 8.06 -52.48 -0.42 0.29 16 40 H 0.19 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.68 7.72 -51.93 -0.40 0.27 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 1.02 5.56 -51.93 -0.29 0.73 16 45 H 0.07 1.42 8.06 -51.93 -0.42 1.00 16 46 H 0.08 1.92 8.14 -51.93 -0.42 1.50 16 47 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 48 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 390.64 15.07 5.89 5.89 Total: -1.00 -32.91 390.64 -8.63 -41.54 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -7.53 Total: 7.61 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -2.83 Total: -3.60 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: 0.79 Total: -53.09 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.08 Total: -13.55 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.91 -8.63 -41.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374029716.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.160 kcal (2) G-P(sol) polarization free energy of solvation -32.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds