Wall clock time and date at job start Tue Mar 31 2020 18:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00098 * 2 1 4 4 H 1.48498 * 109.47011 * 240.00217 * 3 2 1 5 5 H 1.48498 * 109.46776 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46820 * 120.00108 * 3 2 1 7 7 C 1.37873 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00458 * 172.06719 * 7 2 1 9 9 C 1.50702 * 119.99847 * 352.05705 * 7 2 1 10 10 C 1.52994 * 115.55377 * 294.80604 * 9 7 2 11 11 N 1.46502 * 109.47133 * 275.56785 * 10 9 7 12 12 C 1.34771 * 120.00286 * 185.00589 * 11 10 9 13 13 O 1.21586 * 120.00186 * 5.03812 * 12 11 10 14 14 N 1.34775 * 120.00165 * 185.03569 * 12 11 10 15 15 C 1.46926 * 120.63316 * 174.94228 * 14 12 11 16 16 C 1.53188 * 108.77602 * 233.62961 * 15 14 12 17 17 C 1.53046 * 109.31566 * 305.36199 * 16 15 14 18 18 C 1.52992 * 109.46154 * 181.38593 * 17 16 15 19 19 N 1.46505 * 109.47032 * 174.97389 * 18 17 16 20 20 C 1.35312 * 125.86808 * 124.99846 * 19 18 17 21 21 C 1.35352 * 106.17555 * 179.97438 * 20 19 18 22 22 N 1.33772 * 106.49285 * 359.97438 * 21 20 19 23 23 N 1.28633 * 108.89115 * 0.02562 * 22 21 20 24 24 C 1.53037 * 109.52156 * 61.37025 * 17 16 15 25 25 C 1.46930 * 120.63117 * 354.95853 * 14 12 11 26 26 C 1.53005 * 117.51465 * 80.50474 * 9 7 2 27 27 C 1.52997 * 60.00241 * 107.48194 * 26 9 7 28 28 H 0.97005 * 120.00028 * 5.00249 * 1 2 3 29 29 H 1.09003 * 109.47432 * 155.57514 * 10 9 7 30 30 H 1.08996 * 109.47445 * 35.56751 * 10 9 7 31 31 H 0.97002 * 120.00019 * 5.01461 * 11 10 9 32 32 H 1.08997 * 109.59014 * 113.83916 * 15 14 12 33 33 H 1.09005 * 109.70392 * 353.48172 * 15 14 12 34 34 H 1.09005 * 109.49847 * 185.41022 * 16 15 14 35 35 H 1.09007 * 109.50166 * 65.31715 * 16 15 14 36 36 H 1.09002 * 109.45727 * 301.35941 * 17 16 15 37 37 H 1.08997 * 109.47681 * 54.97278 * 18 17 16 38 38 H 1.09008 * 109.47243 * 294.97215 * 18 17 16 39 39 H 1.08004 * 126.91291 * 359.97438 * 20 19 18 40 40 H 1.08001 * 126.75465 * 179.97438 * 21 20 19 41 41 H 1.09000 * 109.49871 * 58.58467 * 24 17 16 42 42 H 1.08999 * 109.49625 * 178.68133 * 24 17 16 43 43 H 1.08993 * 109.59115 * 246.15647 * 25 14 12 44 44 H 1.08994 * 109.58113 * 6.44663 * 25 14 12 45 45 H 1.08994 * 117.49832 * 214.96902 * 26 9 7 46 46 H 1.08993 * 117.50007 * 359.97438 * 26 9 7 47 47 H 1.09000 * 117.50130 * 252.51685 * 27 26 9 48 48 H 1.09001 * 117.52152 * 107.47520 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0767 -1.1985 -0.1296 9 6 1.2618 -2.4929 0.1792 10 6 0.5874 -2.6848 1.5391 11 7 1.5616 -3.2134 2.4971 12 6 1.1671 -3.5579 3.7388 13 8 -0.0113 -3.5169 4.0356 14 7 2.0787 -3.9478 4.6517 15 6 1.6795 -4.2199 6.0393 16 6 2.5605 -3.3894 6.9777 17 6 4.0331 -3.6800 6.6789 18 6 4.9157 -2.8783 7.6375 19 7 6.3189 -3.2461 7.4326 20 6 7.3302 -2.3911 7.1546 21 6 8.4461 -3.1495 7.0465 22 7 8.0679 -4.4145 7.2614 23 7 6.8017 -4.4380 7.4870 24 6 4.3511 -3.2787 5.2367 25 6 3.4906 -4.1084 4.2784 26 6 0.5604 -3.0816 -1.0465 27 6 1.8343 -3.7349 -0.5070 28 1 -0.4850 0.8369 -0.0733 29 1 -0.2405 -3.3867 1.4383 30 1 0.2100 -1.7266 1.8959 31 1 2.4908 -3.3153 2.2377 32 1 1.8120 -5.2798 6.2565 33 1 0.6342 -3.9457 6.1815 34 1 2.3402 -3.6534 8.0121 35 1 2.3600 -2.3293 6.8218 36 1 4.2272 -4.7445 6.8109 37 1 4.6288 -3.0984 8.6657 38 1 4.7874 -1.8131 7.4446 39 1 7.2609 -1.3193 7.0417 40 1 9.4453 -2.8017 6.8294 41 1 4.1335 -2.2198 5.0973 42 1 5.4054 -3.4641 5.0316 43 1 3.7709 -5.1591 4.3520 44 1 3.6400 -3.7610 3.2561 45 1 -0.3815 -3.6056 -0.8841 46 1 0.6356 -2.5292 -1.9831 47 1 2.7480 -3.6123 -1.0886 48 1 1.7309 -4.6885 0.0107 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374029716.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:05 Heat of formation + Delta-G solvation = 77.007096 kcal Electronic energy + Delta-G solvation = -29079.531466 eV Core-core repulsion = 25171.854334 eV Total energy + Delta-G solvation = -3907.677132 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.12116 -41.44658 -39.26761 -38.37840 -36.09792 -35.06335 -34.06218 -33.41861 -32.02624 -31.87444 -29.18737 -27.97313 -26.94971 -25.00353 -24.33685 -23.57334 -23.05038 -22.50268 -21.51506 -21.21069 -20.39935 -19.29804 -18.38408 -17.95951 -17.42761 -17.09156 -16.76687 -16.45894 -15.93524 -15.76031 -15.60091 -15.42380 -15.17124 -15.03151 -14.88053 -14.65950 -14.32295 -14.02712 -13.68464 -13.49521 -13.35246 -13.11823 -12.93635 -12.77783 -12.67365 -12.38321 -12.30245 -12.25286 -12.07099 -11.84315 -11.63747 -11.61571 -11.47126 -11.15138 -10.96262 -10.92098 -10.52060 -10.25228 -10.11290 -10.05720 -9.42473 -8.10517 -6.22558 0.75712 1.43472 1.44374 1.51800 1.55078 1.70084 1.70273 2.18654 2.42311 2.97089 3.15838 3.38174 3.52985 3.58763 3.69700 3.77070 4.03089 4.05771 4.20466 4.23802 4.27577 4.37670 4.41140 4.42474 4.50095 4.53491 4.59899 4.65151 4.76302 4.78987 4.80337 4.86273 4.92594 4.93786 4.94705 5.05055 5.07169 5.23540 5.31623 5.38116 5.54595 5.56532 5.60505 5.71876 5.75894 5.81471 5.99460 6.36286 6.81838 7.07238 7.45208 7.61256 7.62690 8.96860 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011726 B = 0.003080 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.258523 B = 9089.990589 C =10126.375527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.026 3.974 3 Si 0.951 3.049 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.269 1.269 7 C -0.508 4.508 8 H 0.062 0.938 9 C 0.013 3.987 10 C 0.200 3.800 11 N -0.721 5.721 12 C 0.697 3.303 13 O -0.643 6.643 14 N -0.626 5.626 15 C 0.125 3.875 16 C -0.115 4.115 17 C -0.090 4.090 18 C 0.115 3.885 19 N -0.282 5.282 20 C -0.038 4.038 21 C -0.068 4.068 22 N -0.318 5.318 23 N -0.119 5.119 24 C -0.121 4.121 25 C 0.111 3.889 26 C -0.175 4.175 27 C -0.174 4.174 28 H 0.260 0.740 29 H 0.024 0.976 30 H 0.035 0.965 31 H 0.403 0.597 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.121 0.879 38 H 0.132 0.868 39 H 0.227 0.773 40 H 0.211 0.789 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.089 0.911 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.386 -3.706 16.727 21.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.175 4.175 3 Si 0.776 3.224 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.194 1.194 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.012 3.988 10 C 0.076 3.924 11 N -0.377 5.377 12 C 0.398 3.602 13 O -0.525 6.525 14 N -0.363 5.363 15 C 0.002 3.998 16 C -0.154 4.154 17 C -0.109 4.109 18 C -0.005 4.005 19 N -0.076 5.076 20 C -0.190 4.190 21 C -0.226 4.226 22 N -0.183 5.183 23 N -0.098 5.098 24 C -0.160 4.160 25 C -0.011 4.011 26 C -0.213 4.213 27 C -0.211 4.211 28 H 0.069 0.931 29 H 0.043 0.957 30 H 0.054 0.946 31 H 0.241 0.759 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.128 0.872 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.139 0.861 38 H 0.150 0.850 39 H 0.243 0.757 40 H 0.227 0.773 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.095 0.905 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.107 0.893 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.033 -5.033 17.232 21.612 hybrid contribution 0.486 2.060 -0.838 2.276 sum 12.519 -2.973 16.394 20.841 Atomic orbital electron populations 1.70089 1.07355 1.27557 1.49404 1.25702 0.95423 1.02125 0.94279 0.85733 0.78419 0.79276 0.78943 1.19504 1.21630 1.19413 1.20690 0.93389 0.89828 1.50675 0.91968 1.19051 0.98964 0.92240 0.88573 1.20370 0.88800 0.95218 0.88032 1.45254 1.13202 1.67952 1.11311 1.16141 0.84678 0.78019 0.81333 1.90832 1.17756 1.63511 1.80430 1.47298 1.07507 1.71670 1.09861 1.21554 0.99734 1.00078 0.78427 1.21861 0.92123 1.00802 1.00569 1.21354 0.94793 1.01186 0.93584 1.22526 0.72856 1.02567 1.02503 1.47734 1.10962 1.05258 1.43659 1.24345 0.87094 1.00823 1.06720 1.24168 1.02219 0.89010 1.07227 1.75073 1.03627 1.22429 1.17164 1.78224 1.05098 1.05103 1.21379 1.21882 0.99036 1.00464 0.94600 1.21698 0.79399 1.00968 0.99078 1.22669 0.94766 1.04227 0.99645 1.22878 0.96950 0.96354 1.04935 0.93069 0.95734 0.94621 0.75924 0.90364 0.90815 0.87208 0.91222 0.89646 0.86139 0.84952 0.75685 0.77269 0.91110 0.91297 0.90247 0.90506 0.91303 0.91302 0.89291 0.89512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.10 12.60 21.45 0.27 -50.83 16 2 C 0.03 1.35 5.22 84.65 0.44 1.79 16 3 Si 0.95 41.39 29.55 68.60 2.03 43.41 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.51 -25.92 8.82 25.60 0.23 -25.69 16 8 H 0.06 3.07 7.83 -2.91 -0.02 3.04 16 9 C 0.01 0.59 1.32 -52.93 -0.07 0.52 16 10 C 0.20 9.54 5.53 86.38 0.48 10.01 16 11 N -0.72 -28.25 5.37 -478.55 -2.57 -30.82 16 12 C 0.70 26.77 8.30 179.06 1.49 28.25 16 13 O -0.64 -30.23 15.76 -3.99 -0.06 -30.29 16 14 N -0.63 -17.06 2.97 -836.92 -2.49 -19.55 16 15 C 0.12 2.67 6.41 86.36 0.55 3.23 16 16 C -0.11 -1.51 5.36 30.67 0.16 -1.34 16 17 C -0.09 -1.12 2.20 -10.77 -0.02 -1.14 16 18 C 0.12 0.96 5.85 86.38 0.50 1.47 16 19 N -0.28 -4.05 2.87 -347.73 -1.00 -5.05 16 20 C -0.04 -0.43 11.57 83.49 0.97 0.53 16 21 C -0.07 -1.07 12.05 83.73 1.01 -0.06 16 22 N -0.32 -7.52 12.41 -58.25 -0.72 -8.25 16 23 N -0.12 -2.61 12.82 37.02 0.47 -2.14 16 24 C -0.12 -2.00 5.26 30.67 0.16 -1.84 16 25 C 0.11 2.36 6.43 86.36 0.56 2.92 16 26 C -0.17 -7.87 9.88 30.59 0.30 -7.57 16 27 C -0.17 -6.82 9.78 30.60 0.30 -6.52 16 28 H 0.26 14.16 8.32 -92.70 -0.77 13.39 16 29 H 0.02 1.21 7.87 -2.39 -0.02 1.19 16 30 H 0.04 1.98 7.26 -2.39 -0.02 1.96 16 31 H 0.40 13.86 5.87 -92.71 -0.54 13.31 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.07 1.96 7.04 -2.38 -0.02 1.94 16 34 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.09 1.26 8.00 -2.39 -0.02 1.24 16 37 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.13 0.50 8.07 -2.38 -0.02 0.48 16 39 H 0.23 0.63 8.06 -2.91 -0.02 0.61 16 40 H 0.21 1.92 8.06 -2.91 -0.02 1.90 16 41 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.07 1.18 7.72 -2.39 -0.02 1.17 16 43 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.08 1.75 5.56 -2.39 -0.01 1.74 16 45 H 0.07 3.01 8.06 -2.39 -0.02 2.99 16 46 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 47 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 48 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -74.52 390.64 3.40 -71.12 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: 0.42 Total: 27.84 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 7.05 Total: 4.56 kcal Atomic # 7 Polarization: -110.60 SS G_CDS: -6.03 Total: -116.63 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.06 Total: -30.29 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.41 kcal Total: -74.52 3.40 -71.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374029716.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.123 kcal (2) G-P(sol) polarization free energy of solvation -74.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds