Wall clock time and date at job start Tue Mar 31 2020 17:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46902 * 109.47149 * 2 1 4 4 C 1.46905 * 110.99932 * 67.49932 * 3 2 1 5 5 C 1.53228 * 109.34049 * 187.25299 * 4 3 2 6 6 H 1.09005 * 109.78899 * 186.36414 * 5 4 3 7 7 C 1.53008 * 109.62869 * 65.88115 * 5 4 3 8 8 N 1.47073 * 108.52519 * 306.17240 * 5 4 3 9 9 S 1.65603 * 120.88585 * 231.18881 * 8 5 4 10 10 O 1.42108 * 106.39751 * 336.45704 * 9 8 5 11 11 O 1.42092 * 106.40588 * 203.53987 * 9 8 5 12 12 N 1.65600 * 107.21862 * 89.99381 * 9 8 5 13 13 C 1.46499 * 119.99471 * 90.00323 * 12 9 8 14 14 C 1.46494 * 120.00011 * 270.00328 * 12 9 8 15 15 H 1.09001 * 109.47432 * 0.02562 * 14 12 9 16 16 C 1.53003 * 109.46982 * 120.00055 * 14 12 9 17 17 C 1.50700 * 109.47178 * 239.99917 * 14 12 9 18 18 H 1.08001 * 119.99750 * 359.97438 * 17 14 12 19 19 C 1.37876 * 120.00311 * 180.02562 * 17 14 12 20 20 N 1.31513 * 119.99633 * 359.97438 * 19 17 14 21 21 Si 1.86796 * 120.00254 * 180.02562 * 19 17 14 22 22 H 1.48503 * 109.47075 * 89.99494 * 21 19 17 23 23 H 1.48503 * 109.47349 * 209.99836 * 21 19 17 24 24 H 1.48501 * 109.47137 * 329.99695 * 21 19 17 25 25 C 1.47083 * 118.23811 * 51.45797 * 8 5 4 26 26 C 1.46895 * 111.00301 * 191.80189 * 3 2 1 27 27 H 1.08996 * 109.49402 * 292.73572 * 26 3 2 28 28 C 1.53004 * 109.49112 * 52.78582 * 26 3 2 29 29 H 1.08994 * 109.47468 * 59.99684 * 1 2 3 30 30 H 1.08997 * 109.46774 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46746 * 299.99417 * 1 2 3 32 32 H 1.09007 * 109.46746 * 240.00583 * 2 1 3 33 33 H 1.08994 * 109.47468 * 120.00316 * 2 1 3 34 34 H 1.08997 * 109.49015 * 67.29044 * 4 3 2 35 35 H 1.09002 * 109.48918 * 307.21565 * 4 3 2 36 36 H 1.08996 * 109.47082 * 300.97285 * 7 5 4 37 37 H 1.09001 * 109.46720 * 60.96911 * 7 5 4 38 38 H 1.09000 * 109.47196 * 180.96558 * 7 5 4 39 39 H 1.09002 * 109.47103 * 90.00025 * 13 12 9 40 40 H 1.08998 * 109.47183 * 209.99519 * 13 12 9 41 41 H 1.09000 * 109.47434 * 330.00245 * 13 12 9 42 42 H 1.09001 * 109.46845 * 59.99876 * 16 14 12 43 43 H 1.08997 * 109.47282 * 179.97438 * 16 14 12 44 44 H 1.08995 * 109.47347 * 299.99709 * 16 14 12 45 45 H 0.97003 * 119.99888 * 180.02562 * 20 19 17 46 46 H 1.09000 * 109.63140 * 68.24891 * 25 8 5 47 47 H 1.08993 * 109.63039 * 188.83682 * 25 8 5 48 48 H 1.09004 * 109.47052 * 52.03955 * 28 26 3 49 49 H 1.08997 * 109.47044 * 172.03367 * 28 26 3 50 50 H 1.08998 * 109.47300 * 292.04193 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7003 2.0563 1.2671 5 6 2.0628 3.5412 1.1601 6 1 1.9352 4.0231 2.1295 7 6 1.1593 4.2177 0.1271 8 7 3.4666 3.6501 0.7352 9 16 4.5363 4.5994 1.5701 10 8 3.7595 5.5738 2.2532 11 8 5.5738 4.9324 0.6582 12 7 5.2268 3.6495 2.7377 13 6 6.4532 2.9038 2.4444 14 6 4.6113 3.5550 4.0637 15 1 3.7142 4.1735 4.0929 16 6 4.2360 2.0994 4.3491 17 6 5.5876 4.0356 5.1062 18 1 6.5687 4.3770 4.8105 19 6 5.2289 4.0387 6.4374 20 7 4.0344 3.6225 6.7974 21 14 6.4388 4.6351 7.7295 22 1 6.2635 6.0954 7.9352 23 1 6.1897 3.9217 9.0079 24 1 7.8253 4.3626 7.2727 25 6 3.8939 2.8983 -0.4545 26 6 3.4608 1.4339 -0.2805 27 1 4.0081 0.9855 0.5486 28 6 3.7572 0.6594 -1.5663 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.2722 1.5995 2.0748 35 1 0.6347 1.9559 1.4733 36 1 1.2837 3.7296 -0.8395 37 1 0.1197 4.1355 0.4444 38 1 1.4306 5.2699 0.0405 39 1 7.3195 3.5183 2.6896 40 1 6.4748 1.9913 3.0402 41 1 6.4780 2.6471 1.3854 42 1 5.1328 1.4805 4.3198 43 1 3.7784 2.0289 5.3359 44 1 3.5298 1.7517 3.5952 45 1 3.7818 3.6249 7.7340 46 1 3.4228 3.3195 -1.3426 47 1 4.9782 2.9517 -0.5515 48 1 3.1059 1.0167 -2.3640 49 1 4.7981 0.8128 -1.8510 50 1 3.5786 -0.4029 -1.4000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407973238.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:53 Heat of formation + Delta-G solvation = -63.110935 kcal Electronic energy + Delta-G solvation = -30306.043909 eV Core-core repulsion = 26495.442004 eV Total energy + Delta-G solvation = -3810.601905 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.55528 -36.74200 -36.15534 -35.45013 -35.17042 -33.26688 -32.58291 -30.68131 -29.10714 -28.92132 -26.07512 -25.63031 -25.51495 -25.11083 -22.13492 -21.56644 -20.77381 -19.54681 -18.18962 -17.43770 -16.87512 -16.34805 -16.09396 -15.50608 -15.15250 -14.89783 -14.76448 -14.34634 -14.09655 -13.81909 -13.52492 -13.23265 -12.97687 -12.81125 -12.53489 -12.42923 -12.25242 -12.02427 -11.95845 -11.92363 -11.74731 -11.60491 -11.50937 -11.43336 -11.35194 -11.23176 -11.04530 -10.98905 -10.87916 -10.83097 -10.63980 -10.51253 -10.33063 -10.25233 -10.00069 -9.28224 -8.92350 -8.46084 -8.22432 -7.95310 -6.08495 -4.14721 1.17366 3.28528 3.34950 3.37550 3.43476 3.79748 4.09025 4.39537 4.69395 4.74425 4.82521 5.02843 5.09260 5.16598 5.23344 5.25412 5.34450 5.35334 5.41298 5.44518 5.57355 5.60076 5.66299 5.71147 5.79006 5.80319 5.83293 5.90333 5.96227 6.08426 6.08561 6.12865 6.19474 6.29265 6.37020 6.52111 6.60025 6.72813 6.76437 6.87217 6.99974 7.07323 7.09079 7.45926 7.62329 7.77487 8.02460 8.26670 8.87512 9.51157 10.97171 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015282 B = 0.004522 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.818770 B = 6189.944523 C = 6724.813892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.045 3.955 3 N -0.527 5.527 4 C 0.044 3.956 5 C 0.155 3.845 6 H 0.100 0.900 7 C -0.149 4.149 8 N -1.008 6.008 9 S 2.775 3.225 10 O -0.971 6.971 11 O -0.995 6.995 12 N -0.991 5.991 13 C 0.112 3.888 14 C 0.270 3.730 15 H 0.057 0.943 16 C -0.146 4.146 17 C -0.519 4.519 18 H 0.062 0.938 19 C 0.064 3.936 20 N -0.891 5.891 21 Si 0.898 3.102 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.136 3.864 26 C 0.067 3.933 27 H 0.049 0.951 28 C -0.147 4.147 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.031 0.969 34 H 0.047 0.953 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.048 0.952 40 H 0.070 0.930 41 H 0.045 0.955 42 H 0.032 0.968 43 H 0.092 0.908 44 H 0.009 0.991 45 H 0.263 0.737 46 H 0.074 0.926 47 H 0.086 0.914 48 H 0.066 0.934 49 H 0.062 0.938 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.337 -8.545 -14.858 17.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.083 4.083 3 N -0.253 5.253 4 C -0.085 4.085 5 C 0.049 3.951 6 H 0.118 0.882 7 C -0.208 4.208 8 N -0.846 5.846 9 S 2.786 3.214 10 O -0.955 6.955 11 O -0.979 6.979 12 N -0.833 5.833 13 C -0.034 4.034 14 C 0.167 3.833 15 H 0.075 0.925 16 C -0.206 4.206 17 C -0.559 4.559 18 H 0.080 0.920 19 C -0.138 4.138 20 N -0.530 5.530 21 Si 0.725 3.275 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.199 1.199 25 C 0.009 3.991 26 C -0.043 4.043 27 H 0.067 0.933 28 C -0.205 4.205 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.051 0.949 43 H 0.111 0.889 44 H 0.028 0.972 45 H 0.073 0.927 46 H 0.092 0.908 47 H 0.105 0.895 48 H 0.085 0.915 49 H 0.081 0.919 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.485 -7.369 -15.224 17.780 hybrid contribution 0.987 -0.622 1.604 1.983 sum -4.498 -7.991 -13.620 16.419 Atomic orbital electron populations 1.21784 0.95025 1.01195 1.02470 1.22156 0.95969 0.89250 1.00901 1.61966 1.14222 1.15575 1.33515 1.22570 1.01457 0.94227 0.90277 1.20988 0.80173 0.95070 0.98917 0.88209 1.21981 0.98629 1.00123 1.00108 1.58615 1.20881 1.65102 1.39991 1.02106 0.72787 0.74005 0.72463 1.93591 1.71124 1.56798 1.73988 1.93522 1.56703 1.82810 1.64859 1.57782 1.35101 1.64475 1.25954 1.21108 0.86888 0.97057 0.98395 1.18692 0.93832 0.94016 0.76778 0.92525 1.22136 0.98487 0.97753 1.02182 1.21333 1.00670 1.42897 0.90964 0.92016 1.24897 0.95433 0.95066 0.98435 1.69852 1.18959 1.46949 1.17193 0.86506 0.81293 0.78986 0.80689 1.20522 1.21189 1.19889 1.21508 0.99550 0.89835 0.88165 1.22070 0.88482 0.96111 0.97644 0.93335 1.21888 1.01872 0.99597 0.97111 0.91992 0.92657 0.92592 0.90373 0.95037 0.93453 0.89631 0.91256 0.92053 0.92858 0.93329 0.91139 0.93591 0.94920 0.88914 0.97200 0.92725 0.90809 0.89538 0.91508 0.91862 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.88 37.16 0.37 -0.89 16 2 C 0.04 0.43 5.41 -3.82 -0.02 0.41 16 3 N -0.53 -5.93 3.95 -226.07 -0.89 -6.83 16 4 C 0.04 0.56 4.86 -3.70 -0.02 0.55 16 5 C 0.15 2.28 3.16 -67.50 -0.21 2.06 16 6 H 0.10 1.67 7.21 -51.93 -0.37 1.29 16 7 C -0.15 -1.89 9.20 37.16 0.34 -1.55 16 8 N -1.01 -15.88 3.08 -105.94 -0.33 -16.21 16 9 S 2.78 55.82 6.06 -107.50 -0.65 55.17 16 10 O -0.97 -22.90 15.48 -57.17 -0.89 -23.78 16 11 O -0.99 -20.98 15.98 -57.17 -0.91 -21.90 16 12 N -0.99 -20.66 3.12 -115.86 -0.36 -21.02 16 13 C 0.11 2.02 9.53 59.85 0.57 2.59 16 14 C 0.27 6.53 2.62 -69.08 -0.18 6.35 16 15 H 0.06 1.52 6.91 -51.93 -0.36 1.16 16 16 C -0.15 -3.25 8.95 37.16 0.33 -2.92 16 17 C -0.52 -13.97 8.37 -34.44 -0.29 -14.26 16 18 H 0.06 1.67 7.65 -52.49 -0.40 1.27 16 19 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 20 N -0.89 -24.58 11.32 55.43 0.63 -23.95 16 21 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 C 0.14 1.76 5.44 -3.36 -0.02 1.74 16 26 C 0.07 0.76 2.62 -67.35 -0.18 0.59 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 C -0.15 -1.28 8.47 37.16 0.31 -0.96 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.51 6.46 -51.93 -0.34 0.17 16 32 H 0.08 0.67 5.72 -51.93 -0.30 0.37 16 33 H 0.03 0.33 8.11 -51.93 -0.42 -0.09 16 34 H 0.05 0.70 6.55 -51.93 -0.34 0.36 16 35 H 0.09 0.99 6.24 -51.93 -0.32 0.66 16 36 H 0.07 0.83 7.06 -51.93 -0.37 0.47 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 41 H 0.05 0.69 7.79 -51.93 -0.40 0.29 16 42 H 0.03 0.69 6.66 -51.93 -0.35 0.34 16 43 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 44 H 0.01 0.18 6.55 -51.93 -0.34 -0.16 16 45 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 46 H 0.07 0.89 7.61 -51.93 -0.40 0.49 16 47 H 0.09 1.12 7.21 -51.93 -0.37 0.74 16 48 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 50 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 LS Contribution 383.89 15.07 5.79 5.79 Total: -1.00 -30.89 383.89 -10.31 -41.20 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -8.59 Total: 0.06 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 0.92 Total: -4.66 kcal Atomic # 7 Polarization: -67.05 SS G_CDS: -0.95 Total: -68.01 kcal Atomic # 8 Polarization: -43.88 SS G_CDS: -1.80 Total: -45.68 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 55.82 SS G_CDS: -0.65 Total: 55.17 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.89 -10.31 -41.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407973238.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.908 kcal (2) G-P(sol) polarization free energy of solvation -30.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds