Wall clock time and date at job start Tue Mar 31 2020 17:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46902 * 109.47149 * 2 1 4 4 C 1.46905 * 110.99932 * 67.49932 * 3 2 1 5 5 C 1.53228 * 109.34049 * 187.25299 * 4 3 2 6 6 H 1.09005 * 109.78899 * 186.36414 * 5 4 3 7 7 C 1.53008 * 109.62869 * 65.88115 * 5 4 3 8 8 N 1.47073 * 108.52519 * 306.17240 * 5 4 3 9 9 S 1.65603 * 120.88585 * 231.18881 * 8 5 4 10 10 O 1.42108 * 106.39751 * 336.45704 * 9 8 5 11 11 O 1.42092 * 106.40588 * 203.53987 * 9 8 5 12 12 N 1.65600 * 107.21862 * 89.99381 * 9 8 5 13 13 C 1.46499 * 119.99471 * 90.00323 * 12 9 8 14 14 C 1.46494 * 120.00011 * 270.00328 * 12 9 8 15 15 H 1.09001 * 109.47432 * 0.02562 * 14 12 9 16 16 C 1.53003 * 109.46982 * 120.00055 * 14 12 9 17 17 C 1.50700 * 109.47178 * 239.99917 * 14 12 9 18 18 H 1.08001 * 119.99750 * 359.97438 * 17 14 12 19 19 C 1.37876 * 120.00311 * 180.02562 * 17 14 12 20 20 N 1.31513 * 119.99633 * 359.97438 * 19 17 14 21 21 Si 1.86796 * 120.00254 * 180.02562 * 19 17 14 22 22 H 1.48503 * 109.47075 * 89.99494 * 21 19 17 23 23 H 1.48503 * 109.47349 * 209.99836 * 21 19 17 24 24 H 1.48501 * 109.47137 * 329.99695 * 21 19 17 25 25 C 1.47083 * 118.23811 * 51.45797 * 8 5 4 26 26 C 1.46895 * 111.00301 * 191.80189 * 3 2 1 27 27 H 1.08996 * 109.49402 * 292.73572 * 26 3 2 28 28 C 1.53004 * 109.49112 * 52.78582 * 26 3 2 29 29 H 1.08994 * 109.47468 * 59.99684 * 1 2 3 30 30 H 1.08997 * 109.46774 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46746 * 299.99417 * 1 2 3 32 32 H 1.09007 * 109.46746 * 240.00583 * 2 1 3 33 33 H 1.08994 * 109.47468 * 120.00316 * 2 1 3 34 34 H 1.08997 * 109.49015 * 67.29044 * 4 3 2 35 35 H 1.09002 * 109.48918 * 307.21565 * 4 3 2 36 36 H 1.08996 * 109.47082 * 300.97285 * 7 5 4 37 37 H 1.09001 * 109.46720 * 60.96911 * 7 5 4 38 38 H 1.09000 * 109.47196 * 180.96558 * 7 5 4 39 39 H 1.09002 * 109.47103 * 90.00025 * 13 12 9 40 40 H 1.08998 * 109.47183 * 209.99519 * 13 12 9 41 41 H 1.09000 * 109.47434 * 330.00245 * 13 12 9 42 42 H 1.09001 * 109.46845 * 59.99876 * 16 14 12 43 43 H 1.08997 * 109.47282 * 179.97438 * 16 14 12 44 44 H 1.08995 * 109.47347 * 299.99709 * 16 14 12 45 45 H 0.97003 * 119.99888 * 180.02562 * 20 19 17 46 46 H 1.09000 * 109.63140 * 68.24891 * 25 8 5 47 47 H 1.08993 * 109.63039 * 188.83682 * 25 8 5 48 48 H 1.09004 * 109.47052 * 52.03955 * 28 26 3 49 49 H 1.08997 * 109.47044 * 172.03367 * 28 26 3 50 50 H 1.08998 * 109.47300 * 292.04193 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7003 2.0563 1.2671 5 6 2.0628 3.5412 1.1601 6 1 1.9352 4.0231 2.1295 7 6 1.1593 4.2177 0.1271 8 7 3.4666 3.6501 0.7352 9 16 4.5363 4.5994 1.5701 10 8 3.7595 5.5738 2.2532 11 8 5.5738 4.9324 0.6582 12 7 5.2268 3.6495 2.7377 13 6 6.4532 2.9038 2.4444 14 6 4.6113 3.5550 4.0637 15 1 3.7142 4.1735 4.0929 16 6 4.2360 2.0994 4.3491 17 6 5.5876 4.0356 5.1062 18 1 6.5687 4.3770 4.8105 19 6 5.2289 4.0387 6.4374 20 7 4.0344 3.6225 6.7974 21 14 6.4388 4.6351 7.7295 22 1 6.2635 6.0954 7.9352 23 1 6.1897 3.9217 9.0079 24 1 7.8253 4.3626 7.2727 25 6 3.8939 2.8983 -0.4545 26 6 3.4608 1.4339 -0.2805 27 1 4.0081 0.9855 0.5486 28 6 3.7572 0.6594 -1.5663 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.2722 1.5995 2.0748 35 1 0.6347 1.9559 1.4733 36 1 1.2837 3.7296 -0.8395 37 1 0.1197 4.1355 0.4444 38 1 1.4306 5.2699 0.0405 39 1 7.3195 3.5183 2.6896 40 1 6.4748 1.9913 3.0402 41 1 6.4780 2.6471 1.3854 42 1 5.1328 1.4805 4.3198 43 1 3.7784 2.0289 5.3359 44 1 3.5298 1.7517 3.5952 45 1 3.7818 3.6249 7.7340 46 1 3.4228 3.3195 -1.3426 47 1 4.9782 2.9517 -0.5515 48 1 3.1059 1.0167 -2.3640 49 1 4.7981 0.8128 -1.8510 50 1 3.5786 -0.4029 -1.4000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407973238.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:52 Heat of formation + Delta-G solvation = -84.452889 kcal Electronic energy + Delta-G solvation = -30306.969366 eV Core-core repulsion = 26495.442004 eV Total energy + Delta-G solvation = -3811.527362 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.56371 -38.44137 -37.92148 -36.92973 -36.45445 -34.55637 -34.21032 -31.63895 -30.94678 -29.81521 -27.34680 -27.22178 -26.82832 -26.50737 -23.08013 -22.73898 -22.33434 -20.75057 -19.57075 -18.92832 -18.61396 -18.17810 -17.34762 -16.86071 -16.54914 -16.14516 -15.88435 -15.65347 -15.23860 -15.06423 -14.95371 -14.73013 -14.59893 -13.95212 -13.82832 -13.65346 -13.46435 -13.31834 -13.27103 -13.17672 -13.02586 -12.96362 -12.85884 -12.84517 -12.71812 -12.64236 -12.55188 -12.29695 -12.28823 -12.19950 -12.11581 -11.94479 -11.85171 -11.50387 -11.35971 -11.18375 -10.53178 -10.10811 -9.68099 -9.18754 -8.14093 -6.27695 -0.40618 1.40041 1.42306 1.51131 1.96494 2.40132 2.52753 2.90651 3.14060 3.29317 3.59830 3.90381 3.99976 4.02172 4.16686 4.20282 4.29794 4.36947 4.46380 4.52810 4.59511 4.64912 4.67924 4.71276 4.74947 4.79601 4.83997 4.92450 4.93968 5.00089 5.02715 5.05731 5.09587 5.12397 5.19170 5.21668 5.24577 5.40212 5.45588 5.46337 5.54451 5.59549 5.78231 5.85352 6.11132 6.12646 6.22158 6.27476 6.79317 7.41264 8.89976 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015282 B = 0.004522 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.818770 B = 6189.944523 C = 6724.813892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.044 3.956 3 N -0.523 5.523 4 C 0.052 3.948 5 C 0.148 3.852 6 H 0.071 0.929 7 C -0.141 4.141 8 N -1.000 6.000 9 S 2.786 3.214 10 O -1.013 7.013 11 O -1.006 7.006 12 N -0.998 5.998 13 C 0.107 3.893 14 C 0.277 3.723 15 H 0.022 0.978 16 C -0.129 4.129 17 C -0.540 4.540 18 H 0.054 0.946 19 C 0.020 3.980 20 N -0.912 5.912 21 Si 0.954 3.046 22 H -0.282 1.282 23 H -0.277 1.277 24 H -0.267 1.267 25 C 0.128 3.872 26 C 0.068 3.932 27 H 0.034 0.966 28 C -0.139 4.139 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.047 0.953 32 H 0.095 0.905 33 H 0.022 0.978 34 H 0.025 0.975 35 H 0.101 0.899 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.039 0.961 43 H 0.067 0.933 44 H 0.031 0.969 45 H 0.265 0.735 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.073 0.927 49 H 0.072 0.928 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.436 -10.225 -16.591 20.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.083 4.083 3 N -0.248 5.248 4 C -0.077 4.077 5 C 0.042 3.958 6 H 0.089 0.911 7 C -0.200 4.200 8 N -0.841 5.841 9 S 2.798 3.202 10 O -0.997 6.997 11 O -0.990 6.990 12 N -0.839 5.839 13 C -0.039 4.039 14 C 0.173 3.827 15 H 0.040 0.960 16 C -0.189 4.189 17 C -0.579 4.579 18 H 0.072 0.928 19 C -0.180 4.180 20 N -0.551 5.551 21 Si 0.779 3.221 22 H -0.208 1.208 23 H -0.202 1.202 24 H -0.192 1.192 25 C 0.003 3.997 26 C -0.042 4.042 27 H 0.053 0.947 28 C -0.197 4.197 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.113 0.887 33 H 0.040 0.960 34 H 0.044 0.956 35 H 0.119 0.881 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.058 0.942 43 H 0.086 0.914 44 H 0.050 0.950 45 H 0.074 0.926 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.092 0.908 49 H 0.091 0.909 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.562 -9.059 -16.969 20.024 hybrid contribution 0.981 -0.107 2.061 2.285 sum -4.582 -9.166 -14.909 18.091 Atomic orbital electron populations 1.21755 0.94076 1.02053 1.02188 1.22251 0.96727 0.88041 1.01254 1.62012 1.14179 1.16643 1.31993 1.22442 1.01972 0.92772 0.90557 1.21120 0.79777 0.96548 0.98345 0.91089 1.21929 0.99064 0.99102 0.99927 1.58273 1.20598 1.64935 1.40251 1.01539 0.72620 0.73900 0.72180 1.93530 1.72005 1.59063 1.75128 1.93493 1.57480 1.83271 1.64787 1.57683 1.36282 1.64900 1.25076 1.21289 0.85387 0.96730 1.00473 1.18344 0.92178 0.94315 0.77863 0.96017 1.21888 0.99040 0.96620 1.01320 1.21636 1.00866 1.43312 0.92128 0.92807 1.25610 0.96971 0.95217 1.00225 1.69965 1.20150 1.47410 1.17599 0.85625 0.79611 0.78181 0.78642 1.20820 1.20228 1.19197 1.21824 0.99967 0.90699 0.87197 1.22086 0.88344 0.95042 0.98750 0.94749 1.21848 1.02673 0.99718 0.95492 0.91686 0.91306 0.93380 0.88669 0.95979 0.95644 0.88119 0.90023 0.90200 0.94124 0.94111 0.90554 0.90508 0.94167 0.91449 0.95033 0.92585 0.89257 0.89358 0.90785 0.90915 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.88 71.98 0.71 -1.35 16 2 C 0.04 0.74 5.41 86.30 0.47 1.21 16 3 N -0.52 -10.59 3.95 -869.14 -3.43 -14.02 16 4 C 0.05 1.29 4.86 86.38 0.42 1.71 16 5 C 0.15 4.34 3.16 44.96 0.14 4.49 16 6 H 0.07 2.50 7.21 -2.38 -0.02 2.48 16 7 C -0.14 -3.42 9.20 71.98 0.66 -2.76 16 8 N -1.00 -31.18 3.08 -489.10 -1.51 -32.69 16 9 S 2.79 114.07 6.06 -56.49 -0.34 113.73 16 10 O -1.01 -49.91 15.48 -128.00 -1.98 -51.89 16 11 O -1.01 -42.32 15.98 -128.00 -2.05 -44.37 16 12 N -1.00 -42.23 3.12 -520.46 -1.62 -43.86 16 13 C 0.11 3.78 9.53 127.77 1.22 5.00 16 14 C 0.28 13.81 2.62 44.25 0.12 13.93 16 15 H 0.02 1.24 6.91 -2.39 -0.02 1.23 16 16 C -0.13 -5.82 8.95 71.98 0.64 -5.18 16 17 C -0.54 -29.70 8.37 25.60 0.21 -29.48 16 18 H 0.05 2.97 7.65 -2.91 -0.02 2.94 16 19 C 0.02 1.08 5.30 84.65 0.45 1.53 16 20 N -0.91 -51.32 11.32 21.45 0.24 -51.08 16 21 Si 0.95 43.66 29.54 68.60 2.03 45.68 16 22 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 23 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 25 C 0.13 3.09 5.44 86.50 0.47 3.56 16 26 C 0.07 1.39 2.62 45.15 0.12 1.51 16 27 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 28 C -0.14 -1.95 8.47 71.98 0.61 -1.34 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.05 0.77 6.46 -2.38 -0.02 0.75 16 32 H 0.10 1.29 5.72 -2.38 -0.01 1.27 16 33 H 0.02 0.42 8.11 -2.39 -0.02 0.40 16 34 H 0.03 0.74 6.55 -2.39 -0.02 0.73 16 35 H 0.10 2.19 6.24 -2.39 -0.01 2.17 16 36 H 0.08 1.77 7.06 -2.39 -0.02 1.75 16 37 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.08 2.59 6.43 -2.39 -0.02 2.58 16 41 H 0.08 2.21 7.79 -2.39 -0.02 2.19 16 42 H 0.04 1.70 6.66 -2.39 -0.02 1.68 16 43 H 0.07 3.40 6.07 -2.39 -0.01 3.39 16 44 H 0.03 1.24 6.55 -2.39 -0.02 1.22 16 45 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 46 H 0.09 1.91 7.61 -2.39 -0.02 1.90 16 47 H 0.09 2.11 7.21 -2.39 -0.02 2.09 16 48 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.07 0.90 8.13 -2.39 -0.02 0.89 16 50 H 0.07 0.84 6.56 -2.39 -0.02 0.82 16 Total: -1.00 -67.65 383.89 -1.51 -69.15 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.91 Total: 16.51 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: 6.24 Total: -7.17 kcal Atomic # 7 Polarization: -135.33 SS G_CDS: -6.32 Total: -141.64 kcal Atomic # 8 Polarization: -92.23 SS G_CDS: -4.03 Total: -96.26 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: 114.07 SS G_CDS: -0.34 Total: 113.73 kcal Total: -67.65 -1.51 -69.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407973238.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.301 kcal (2) G-P(sol) polarization free energy of solvation -67.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds