Wall clock time and date at job start Tue Mar 31 2020 17:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46901 * 109.46587 * 2 1 4 4 C 1.46903 * 111.00337 * 66.04851 * 3 2 1 5 5 C 1.53241 * 109.34350 * 172.74377 * 4 3 2 6 6 H 1.08996 * 109.62310 * 294.12166 * 5 4 3 7 7 C 1.52996 * 109.62896 * 173.53961 * 5 4 3 8 8 N 1.47083 * 108.51747 * 53.82940 * 5 4 3 9 9 S 1.65595 * 120.87842 * 128.81863 * 8 5 4 10 10 O 1.42102 * 106.40491 * 333.56164 * 9 8 5 11 11 O 1.42099 * 106.40184 * 200.63886 * 9 8 5 12 12 N 1.65607 * 107.21859 * 87.10007 * 9 8 5 13 13 C 1.46497 * 119.99901 * 262.65795 * 12 9 8 14 14 C 1.46500 * 119.99927 * 82.65358 * 12 9 8 15 15 H 1.09002 * 109.47375 * 0.02562 * 14 12 9 16 16 C 1.52994 * 109.47302 * 240.00187 * 14 12 9 17 17 C 1.50709 * 109.46863 * 120.00193 * 14 12 9 18 18 H 1.08003 * 119.99940 * 0.02562 * 17 14 12 19 19 C 1.37873 * 120.00078 * 180.02562 * 17 14 12 20 20 N 1.31508 * 120.00160 * 179.72564 * 19 17 14 21 21 Si 1.86806 * 119.99939 * 0.02562 * 19 17 14 22 22 H 1.48506 * 109.46870 * 269.72265 * 21 19 17 23 23 H 1.48497 * 109.47109 * 29.71971 * 21 19 17 24 24 H 1.48497 * 109.47012 * 149.72247 * 21 19 17 25 25 C 1.47077 * 118.23765 * 309.08604 * 8 5 4 26 26 C 1.46901 * 111.00497 * 301.74483 * 3 2 1 27 27 H 1.08994 * 109.49002 * 67.28950 * 26 3 2 28 28 C 1.52999 * 109.49037 * 307.24287 * 26 3 2 29 29 H 1.09001 * 109.46821 * 299.99648 * 1 2 3 30 30 H 1.08995 * 109.47424 * 59.99947 * 1 2 3 31 31 H 1.09007 * 109.46542 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47339 * 240.00514 * 2 1 3 33 33 H 1.08997 * 109.47197 * 119.99566 * 2 1 3 34 34 H 1.09001 * 109.49358 * 52.78211 * 4 3 2 35 35 H 1.08999 * 109.51133 * 292.71842 * 4 3 2 36 36 H 1.09007 * 109.46905 * 308.11546 * 7 5 4 37 37 H 1.08995 * 109.47201 * 68.10815 * 7 5 4 38 38 H 1.08999 * 109.47258 * 188.11570 * 7 5 4 39 39 H 1.08996 * 109.47565 * 275.76985 * 13 12 9 40 40 H 1.08999 * 109.47183 * 35.77482 * 13 12 9 41 41 H 1.09007 * 109.47080 * 155.77402 * 13 12 9 42 42 H 1.08997 * 109.47293 * 60.00122 * 16 14 12 43 43 H 1.09004 * 109.46718 * 180.02562 * 16 14 12 44 44 H 1.09000 * 109.47173 * 300.00022 * 16 14 12 45 45 H 0.97001 * 120.00193 * 180.28096 * 20 19 17 46 46 H 1.08997 * 109.62522 * 170.62261 * 25 8 5 47 47 H 1.08999 * 109.62987 * 291.20429 * 25 8 5 48 48 H 1.09007 * 109.47395 * 59.99476 * 28 26 3 49 49 H 1.09000 * 109.47436 * 179.97438 * 28 26 3 50 50 H 1.09003 * 109.47486 * 299.99675 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6701 2.0670 1.2533 5 6 2.3497 3.4400 1.2907 6 1 3.4310 3.3119 1.3399 7 6 1.8643 4.2206 2.5137 8 7 1.9940 4.1708 0.0649 9 16 1.3912 5.7114 0.1386 10 8 0.7594 5.8349 1.4054 11 8 0.7168 5.9377 -1.0916 12 7 2.6857 6.7439 0.1590 13 6 3.1787 7.2754 1.4321 14 6 3.3380 7.1257 -1.0960 15 1 2.8361 6.6355 -1.9302 16 6 4.8058 6.6955 -1.0593 17 6 3.2569 8.6206 -1.2697 18 1 2.7687 9.2256 -0.5201 19 6 3.8059 9.2157 -2.3856 20 7 3.7304 10.5195 -2.5399 21 14 4.6498 8.1690 -3.6826 22 1 6.0924 8.0414 -3.3540 23 1 4.0277 6.8210 -3.7124 24 1 4.5001 8.8128 -5.0124 25 6 2.1823 3.4948 -1.2277 26 6 1.5148 2.1220 -1.1662 27 1 0.4359 2.2488 -1.0772 28 6 1.8332 1.3392 -2.4417 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 0.0005 32 1 1.8934 -0.5137 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 2.0100 1.4698 2.0994 35 1 0.5891 2.1946 1.3092 36 1 0.7744 4.2290 2.5303 37 1 2.2377 3.7445 3.4203 38 1 2.2348 5.2444 2.4618 39 1 2.5934 8.1516 1.7110 40 1 3.0831 6.5133 2.2054 41 1 4.2265 7.5569 1.3269 42 1 4.8645 5.6144 -0.9337 43 1 5.2912 6.9800 -1.9930 44 1 5.3075 7.1860 -0.2252 45 1 4.1131 10.9378 -3.3270 46 1 1.7258 4.0873 -2.0206 47 1 3.2472 3.3723 -1.4252 48 1 1.3558 0.3603 -2.3960 49 1 1.4581 1.8860 -3.3068 50 1 2.9122 1.2133 -2.5310 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407973239.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:56 Heat of formation + Delta-G solvation = -32.567017 kcal Electronic energy + Delta-G solvation = -30280.912486 eV Core-core repulsion = 26471.635065 eV Total energy + Delta-G solvation = -3809.277422 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.79561 -37.20882 -36.45317 -35.73630 -35.26876 -33.24943 -32.50004 -30.49905 -30.06908 -29.37082 -25.88626 -25.85457 -25.19402 -24.95834 -22.99960 -21.83342 -20.84512 -19.62514 -18.26689 -17.30438 -16.91966 -16.60697 -16.23245 -15.93767 -15.56537 -15.21635 -14.73232 -14.66630 -14.07280 -13.93606 -13.60320 -13.34144 -13.10450 -12.90667 -12.86489 -12.78368 -12.39166 -12.29496 -12.18060 -12.16720 -12.09426 -11.81737 -11.70548 -11.55462 -11.50097 -11.40987 -11.21289 -11.12663 -10.93065 -10.80897 -10.72741 -10.35355 -10.15973 -9.96443 -9.59865 -9.40508 -9.02331 -8.63751 -8.36946 -8.08935 -6.12450 -4.12847 1.05822 3.21671 3.28957 3.32916 3.35564 3.70415 3.96818 4.34169 4.57865 4.63684 4.68915 4.89511 4.94189 5.03624 5.08017 5.11161 5.17137 5.20180 5.23039 5.41950 5.43992 5.47542 5.54977 5.56288 5.66710 5.71135 5.75631 5.79987 5.86177 5.91226 5.95465 6.09974 6.13873 6.18153 6.22552 6.26905 6.34126 6.48504 6.54045 6.61400 6.72517 6.82922 6.93154 6.95067 7.29020 7.40562 7.63521 8.47409 8.91964 9.47357 11.00671 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.016757 B = 0.004668 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.501214 B = 5997.156444 C = 6883.306418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.048 3.952 3 N -0.530 5.530 4 C 0.049 3.951 5 C 0.158 3.842 6 H 0.079 0.921 7 C -0.180 4.180 8 N -1.008 6.008 9 S 2.776 3.224 10 O -0.985 6.985 11 O -0.976 6.976 12 N -0.984 5.984 13 C 0.104 3.896 14 C 0.243 3.757 15 H 0.050 0.950 16 C -0.162 4.162 17 C -0.521 4.521 18 H 0.081 0.919 19 C 0.074 3.926 20 N -0.894 5.894 21 Si 0.882 3.118 22 H -0.277 1.277 23 H -0.265 1.265 24 H -0.294 1.294 25 C 0.127 3.873 26 C 0.069 3.931 27 H 0.049 0.951 28 C -0.149 4.149 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.041 0.959 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.051 0.949 40 H 0.055 0.945 41 H 0.076 0.924 42 H 0.033 0.967 43 H 0.048 0.952 44 H 0.059 0.941 45 H 0.265 0.735 46 H 0.097 0.903 47 H 0.074 0.926 48 H 0.060 0.940 49 H 0.064 0.936 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.416 -21.082 6.615 22.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.080 4.080 3 N -0.255 5.255 4 C -0.081 4.081 5 C 0.052 3.948 6 H 0.097 0.903 7 C -0.238 4.238 8 N -0.847 5.847 9 S 2.787 3.213 10 O -0.969 6.969 11 O -0.959 6.959 12 N -0.825 5.825 13 C -0.041 4.041 14 C 0.138 3.862 15 H 0.068 0.932 16 C -0.221 4.221 17 C -0.560 4.560 18 H 0.099 0.901 19 C -0.129 4.129 20 N -0.532 5.532 21 Si 0.712 3.288 22 H -0.204 1.204 23 H -0.190 1.190 24 H -0.221 1.221 25 C 0.001 3.999 26 C -0.041 4.041 27 H 0.067 0.933 28 C -0.207 4.207 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.059 0.941 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.053 0.947 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.115 0.885 47 H 0.092 0.908 48 H 0.079 0.921 49 H 0.083 0.917 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.788 -20.652 6.485 21.719 hybrid contribution 0.085 -0.474 -0.732 0.877 sum -1.703 -21.126 5.753 21.961 Atomic orbital electron populations 1.22467 0.98352 1.02203 1.02367 1.22208 0.92843 0.90096 1.02813 1.62131 1.59380 1.01865 1.02078 1.22513 0.98566 0.94862 0.92151 1.21036 0.99600 0.90785 0.83401 0.90300 1.22844 1.04432 1.00757 0.95750 1.58509 1.82423 1.32340 1.11434 1.02179 0.73968 0.72114 0.73009 1.93663 1.74935 1.86370 1.41914 1.93570 1.71735 1.84283 1.46335 1.57507 1.52042 1.59625 1.13310 1.21353 1.01319 0.98225 0.83249 1.19014 0.89065 0.97511 0.80563 0.93244 1.22487 0.99784 0.98456 1.01341 1.21162 1.37624 0.89429 1.07810 0.90054 1.24907 0.95661 0.94833 0.97505 1.69871 1.45375 1.09163 1.28793 0.86951 0.79868 0.80911 0.81069 1.20380 1.18996 1.22097 1.21459 1.01483 0.92209 0.84775 1.21874 0.97578 0.93725 0.90913 0.93334 1.21902 1.02827 0.99912 0.96040 0.92527 0.92200 0.92209 0.90184 0.90848 0.89894 0.94085 0.89484 0.92106 0.89921 0.93006 0.92637 0.90550 0.94745 0.93338 0.92182 0.92457 0.88523 0.90775 0.92109 0.91654 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.60 9.08 37.16 0.34 -1.26 16 2 C 0.05 0.40 5.51 -3.82 -0.02 0.38 16 3 N -0.53 -5.61 4.68 -226.63 -1.06 -6.67 16 4 C 0.05 0.52 4.45 -3.70 -0.02 0.51 16 5 C 0.16 1.97 3.68 -67.49 -0.25 1.72 16 6 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 7 C -0.18 -2.26 7.54 37.16 0.28 -1.98 16 8 N -1.01 -15.16 3.39 -106.46 -0.36 -15.52 16 9 S 2.78 52.89 5.72 -107.50 -0.61 52.27 16 10 O -0.98 -18.80 12.08 -57.17 -0.69 -19.49 16 11 O -0.98 -22.16 15.49 -57.17 -0.89 -23.04 16 12 N -0.98 -19.70 3.12 -115.85 -0.36 -20.06 16 13 C 0.10 1.81 9.43 59.85 0.56 2.37 16 14 C 0.24 5.60 2.18 -69.08 -0.15 5.45 16 15 H 0.05 1.20 6.17 -51.93 -0.32 0.88 16 16 C -0.16 -3.27 8.66 37.15 0.32 -2.95 16 17 C -0.52 -14.38 8.95 -34.44 -0.31 -14.69 16 18 H 0.08 2.44 7.89 -52.48 -0.41 2.03 16 19 C 0.07 2.09 5.45 -17.82 -0.10 2.00 16 20 N -0.89 -26.96 13.96 55.43 0.77 -26.19 16 21 Si 0.88 21.31 24.37 -169.99 -4.14 17.17 16 22 H -0.28 -6.38 6.88 56.52 0.39 -5.99 16 23 H -0.26 -6.08 6.52 56.52 0.37 -5.71 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 C 0.13 1.77 5.93 -3.84 -0.02 1.75 16 26 C 0.07 0.80 1.96 -67.83 -0.13 0.67 16 27 H 0.05 0.61 6.70 -51.93 -0.35 0.26 16 28 C -0.15 -1.40 8.61 37.16 0.32 -1.08 16 29 H 0.06 0.50 6.72 -51.93 -0.35 0.15 16 30 H 0.06 0.54 6.17 -51.93 -0.32 0.22 16 31 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 32 H 0.08 0.62 6.31 -51.93 -0.33 0.29 16 33 H 0.07 0.55 8.05 -51.93 -0.42 0.13 16 34 H 0.08 0.74 8.04 -51.93 -0.42 0.32 16 35 H 0.04 0.47 6.82 -51.93 -0.35 0.12 16 36 H 0.09 1.23 6.70 -51.93 -0.35 0.88 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.08 1.16 3.12 -51.93 -0.16 1.00 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 0.79 5.06 -51.93 -0.26 0.53 16 41 H 0.08 1.28 6.44 -51.92 -0.33 0.95 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.05 1.03 3.28 -51.93 -0.17 0.86 16 44 H 0.06 1.16 6.67 -51.93 -0.35 0.81 16 45 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.10 1.48 6.86 -51.93 -0.36 1.13 16 47 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.06 0.49 5.96 -51.93 -0.31 0.18 16 49 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 365.13 15.07 5.50 5.50 Total: -1.00 -32.29 365.13 -9.14 -41.43 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -8.12 Total: 1.72 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: 0.83 Total: -7.11 kcal Atomic # 7 Polarization: -67.43 SS G_CDS: -1.01 Total: -68.44 kcal Atomic # 8 Polarization: -40.96 SS G_CDS: -1.58 Total: -42.54 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.14 Total: 17.17 kcal Atomic # 16 Polarization: 52.89 SS G_CDS: -0.61 Total: 52.27 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.29 -9.14 -41.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407973239.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.863 kcal (2) G-P(sol) polarization free energy of solvation -32.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds