Wall clock time and date at job start Tue Mar 31 2020 17:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46901 * 109.46587 * 2 1 4 4 C 1.46903 * 111.00337 * 66.04851 * 3 2 1 5 5 C 1.53241 * 109.34350 * 172.74377 * 4 3 2 6 6 H 1.08996 * 109.62310 * 294.12166 * 5 4 3 7 7 C 1.52996 * 109.62896 * 173.53961 * 5 4 3 8 8 N 1.47083 * 108.51747 * 53.82940 * 5 4 3 9 9 S 1.65595 * 120.87842 * 128.81863 * 8 5 4 10 10 O 1.42102 * 106.40491 * 333.56164 * 9 8 5 11 11 O 1.42099 * 106.40184 * 200.63886 * 9 8 5 12 12 N 1.65607 * 107.21859 * 87.10007 * 9 8 5 13 13 C 1.46497 * 119.99901 * 262.65795 * 12 9 8 14 14 C 1.46500 * 119.99927 * 82.65358 * 12 9 8 15 15 H 1.09002 * 109.47375 * 0.02562 * 14 12 9 16 16 C 1.52994 * 109.47302 * 240.00187 * 14 12 9 17 17 C 1.50709 * 109.46863 * 120.00193 * 14 12 9 18 18 H 1.08003 * 119.99940 * 0.02562 * 17 14 12 19 19 C 1.37873 * 120.00078 * 180.02562 * 17 14 12 20 20 N 1.31508 * 120.00160 * 179.72564 * 19 17 14 21 21 Si 1.86806 * 119.99939 * 0.02562 * 19 17 14 22 22 H 1.48506 * 109.46870 * 269.72265 * 21 19 17 23 23 H 1.48497 * 109.47109 * 29.71971 * 21 19 17 24 24 H 1.48497 * 109.47012 * 149.72247 * 21 19 17 25 25 C 1.47077 * 118.23765 * 309.08604 * 8 5 4 26 26 C 1.46901 * 111.00497 * 301.74483 * 3 2 1 27 27 H 1.08994 * 109.49002 * 67.28950 * 26 3 2 28 28 C 1.52999 * 109.49037 * 307.24287 * 26 3 2 29 29 H 1.09001 * 109.46821 * 299.99648 * 1 2 3 30 30 H 1.08995 * 109.47424 * 59.99947 * 1 2 3 31 31 H 1.09007 * 109.46542 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47339 * 240.00514 * 2 1 3 33 33 H 1.08997 * 109.47197 * 119.99566 * 2 1 3 34 34 H 1.09001 * 109.49358 * 52.78211 * 4 3 2 35 35 H 1.08999 * 109.51133 * 292.71842 * 4 3 2 36 36 H 1.09007 * 109.46905 * 308.11546 * 7 5 4 37 37 H 1.08995 * 109.47201 * 68.10815 * 7 5 4 38 38 H 1.08999 * 109.47258 * 188.11570 * 7 5 4 39 39 H 1.08996 * 109.47565 * 275.76985 * 13 12 9 40 40 H 1.08999 * 109.47183 * 35.77482 * 13 12 9 41 41 H 1.09007 * 109.47080 * 155.77402 * 13 12 9 42 42 H 1.08997 * 109.47293 * 60.00122 * 16 14 12 43 43 H 1.09004 * 109.46718 * 180.02562 * 16 14 12 44 44 H 1.09000 * 109.47173 * 300.00022 * 16 14 12 45 45 H 0.97001 * 120.00193 * 180.28096 * 20 19 17 46 46 H 1.08997 * 109.62522 * 170.62261 * 25 8 5 47 47 H 1.08999 * 109.62987 * 291.20429 * 25 8 5 48 48 H 1.09007 * 109.47395 * 59.99476 * 28 26 3 49 49 H 1.09000 * 109.47436 * 179.97438 * 28 26 3 50 50 H 1.09003 * 109.47486 * 299.99675 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6701 2.0670 1.2533 5 6 2.3497 3.4400 1.2907 6 1 3.4310 3.3119 1.3399 7 6 1.8643 4.2206 2.5137 8 7 1.9940 4.1708 0.0649 9 16 1.3912 5.7114 0.1386 10 8 0.7594 5.8349 1.4054 11 8 0.7168 5.9377 -1.0916 12 7 2.6857 6.7439 0.1590 13 6 3.1787 7.2754 1.4321 14 6 3.3380 7.1257 -1.0960 15 1 2.8361 6.6355 -1.9302 16 6 4.8058 6.6955 -1.0593 17 6 3.2569 8.6206 -1.2697 18 1 2.7687 9.2256 -0.5201 19 6 3.8059 9.2157 -2.3856 20 7 3.7304 10.5195 -2.5399 21 14 4.6498 8.1690 -3.6826 22 1 6.0924 8.0414 -3.3540 23 1 4.0277 6.8210 -3.7124 24 1 4.5001 8.8128 -5.0124 25 6 2.1823 3.4948 -1.2277 26 6 1.5148 2.1220 -1.1662 27 1 0.4359 2.2488 -1.0772 28 6 1.8332 1.3392 -2.4417 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 0.0005 32 1 1.8934 -0.5137 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 2.0100 1.4698 2.0994 35 1 0.5891 2.1946 1.3092 36 1 0.7744 4.2290 2.5303 37 1 2.2377 3.7445 3.4203 38 1 2.2348 5.2444 2.4618 39 1 2.5934 8.1516 1.7110 40 1 3.0831 6.5133 2.2054 41 1 4.2265 7.5569 1.3269 42 1 4.8645 5.6144 -0.9337 43 1 5.2912 6.9800 -1.9930 44 1 5.3075 7.1860 -0.2252 45 1 4.1131 10.9378 -3.3270 46 1 1.7258 4.0873 -2.0206 47 1 3.2472 3.3723 -1.4252 48 1 1.3558 0.3603 -2.3960 49 1 1.4581 1.8860 -3.3068 50 1 2.9122 1.2133 -2.5310 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407973239.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:55 Heat of formation + Delta-G solvation = -57.789371 kcal Electronic energy + Delta-G solvation = -30282.006210 eV Core-core repulsion = 26471.635065 eV Total energy + Delta-G solvation = -3810.371145 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.68956 -38.71036 -38.13648 -37.02260 -36.60162 -34.54949 -34.17638 -31.82957 -31.33273 -30.24601 -27.37781 -26.99819 -26.74618 -26.09212 -23.80538 -22.88257 -22.58622 -20.53906 -19.72729 -19.01462 -18.44023 -18.07095 -17.56861 -16.96831 -16.84981 -16.37796 -16.18214 -15.62187 -15.35006 -15.24668 -14.85136 -14.71611 -14.53702 -14.20897 -14.19553 -13.96160 -13.84308 -13.58682 -13.37109 -13.31760 -13.13285 -13.03204 -12.98937 -12.86503 -12.77329 -12.64097 -12.52325 -12.34863 -12.06215 -12.03825 -11.92045 -11.71245 -11.51999 -11.45458 -11.32474 -11.10071 -10.76301 -10.11556 -9.74532 -9.20628 -8.30362 -6.35799 -0.42478 1.30046 1.38481 1.47016 1.93461 2.31596 2.50572 2.89218 3.04124 3.30073 3.54255 3.83971 3.94846 3.99165 4.06826 4.19535 4.26269 4.31338 4.37460 4.41165 4.48775 4.54137 4.56225 4.66516 4.70022 4.71388 4.75079 4.79485 4.82236 4.84639 4.88839 4.98305 5.01585 5.04165 5.08956 5.15229 5.16415 5.24415 5.26483 5.43760 5.46245 5.57433 5.60412 5.65521 5.90738 6.09340 6.18778 6.33535 6.68222 7.28879 8.86610 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.016757 B = 0.004668 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.501214 B = 5997.156444 C = 6883.306418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.049 3.951 3 N -0.531 5.531 4 C 0.050 3.950 5 C 0.154 3.846 6 H 0.097 0.903 7 C -0.179 4.179 8 N -0.999 5.999 9 S 2.783 3.217 10 O -0.991 6.991 11 O -1.020 7.020 12 N -0.992 5.992 13 C 0.100 3.900 14 C 0.246 3.754 15 H 0.038 0.962 16 C -0.155 4.155 17 C -0.527 4.527 18 H 0.037 0.963 19 C 0.015 3.985 20 N -0.946 5.946 21 Si 0.941 3.059 22 H -0.252 1.252 23 H -0.245 1.245 24 H -0.299 1.299 25 C 0.120 3.880 26 C 0.072 3.928 27 H 0.033 0.967 28 C -0.144 4.144 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.029 0.971 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.031 0.969 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.041 0.959 44 H 0.066 0.934 45 H 0.267 0.733 46 H 0.076 0.924 47 H 0.088 0.912 48 H 0.076 0.924 49 H 0.062 0.938 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.385 -25.158 7.141 26.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.078 4.078 3 N -0.255 5.255 4 C -0.079 4.079 5 C 0.049 3.951 6 H 0.115 0.885 7 C -0.237 4.237 8 N -0.841 5.841 9 S 2.796 3.204 10 O -0.975 6.975 11 O -1.004 7.004 12 N -0.832 5.832 13 C -0.045 4.045 14 C 0.140 3.860 15 H 0.055 0.945 16 C -0.213 4.213 17 C -0.567 4.567 18 H 0.055 0.945 19 C -0.184 4.184 20 N -0.585 5.585 21 Si 0.767 3.233 22 H -0.177 1.177 23 H -0.169 1.169 24 H -0.227 1.227 25 C -0.006 4.006 26 C -0.038 4.038 27 H 0.051 0.949 28 C -0.202 4.202 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.128 0.872 35 H 0.048 0.952 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.085 0.915 39 H 0.050 0.950 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.060 0.940 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.094 0.906 47 H 0.106 0.894 48 H 0.095 0.905 49 H 0.081 0.919 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.010 -24.739 7.046 25.723 hybrid contribution -0.590 0.782 -0.761 1.240 sum -0.580 -23.957 6.285 24.775 Atomic orbital electron populations 1.22435 0.98455 1.02863 1.01350 1.22304 0.92687 0.88744 1.04114 1.62157 1.59298 1.02696 1.01380 1.22529 0.97797 0.94261 0.93331 1.21330 1.00783 0.91170 0.81818 0.88503 1.22782 1.03206 1.00244 0.97516 1.58199 1.82210 1.30560 1.13138 1.01766 0.73732 0.72917 0.71995 1.93671 1.75291 1.86912 1.41644 1.93506 1.73098 1.85410 1.48375 1.57483 1.51969 1.60658 1.13103 1.21512 1.01117 0.98740 0.83145 1.18782 0.91363 0.94130 0.81679 0.94462 1.22346 0.96814 1.00912 1.01275 1.21460 1.36515 0.91975 1.06731 0.94490 1.25812 0.96589 0.95977 0.99976 1.70035 1.47270 1.11368 1.29872 0.85984 0.80087 0.79799 0.77422 1.17695 1.16889 1.22667 1.21635 1.02377 0.93035 0.83552 1.21804 0.96427 0.92924 0.92652 0.94858 1.21878 1.03346 1.00267 0.94691 0.93419 0.93390 0.90693 0.89140 0.89313 0.87170 0.95243 0.91427 0.88674 0.91544 0.94992 0.89135 0.89958 0.91067 0.94033 0.91471 0.92395 0.90592 0.89410 0.90541 0.91883 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.67 9.08 71.98 0.65 -2.02 16 2 C 0.05 0.64 5.51 86.30 0.48 1.11 16 3 N -0.53 -9.48 4.68 -870.93 -4.07 -13.55 16 4 C 0.05 0.92 4.45 86.38 0.38 1.31 16 5 C 0.15 3.38 3.68 44.96 0.17 3.54 16 6 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 7 C -0.18 -4.08 7.54 71.98 0.54 -3.54 16 8 N -1.00 -28.59 3.39 -490.74 -1.67 -30.25 16 9 S 2.78 106.74 5.72 -56.49 -0.32 106.42 16 10 O -0.99 -38.12 12.08 -128.00 -1.55 -39.66 16 11 O -1.02 -47.89 15.49 -128.00 -1.98 -49.87 16 12 N -0.99 -39.76 3.12 -520.44 -1.62 -41.38 16 13 C 0.10 3.45 9.43 127.77 1.21 4.65 16 14 C 0.25 11.30 2.18 44.25 0.10 11.40 16 15 H 0.04 1.81 6.17 -2.39 -0.01 1.80 16 16 C -0.15 -5.87 8.66 71.98 0.62 -5.24 16 17 C -0.53 -30.09 8.95 25.60 0.23 -29.86 16 18 H 0.04 2.36 7.89 -2.91 -0.02 2.34 16 19 C 0.01 0.84 5.45 84.65 0.46 1.30 16 20 N -0.95 -59.16 13.96 21.44 0.30 -58.86 16 21 Si 0.94 43.59 24.37 68.60 1.67 45.27 16 22 H -0.25 -10.60 6.88 99.48 0.68 -9.92 16 23 H -0.25 -10.47 6.52 99.48 0.65 -9.82 16 24 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 25 C 0.12 3.16 5.93 86.20 0.51 3.67 16 26 C 0.07 1.53 1.96 44.84 0.09 1.62 16 27 H 0.03 0.81 6.70 -2.39 -0.02 0.79 16 28 C -0.14 -2.35 8.61 71.98 0.62 -1.73 16 29 H 0.05 0.75 6.72 -2.39 -0.02 0.73 16 30 H 0.05 0.78 6.17 -2.39 -0.01 0.77 16 31 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.09 1.03 6.31 -2.39 -0.02 1.01 16 33 H 0.09 0.93 8.05 -2.39 -0.02 0.91 16 34 H 0.11 1.46 8.04 -2.39 -0.02 1.44 16 35 H 0.03 0.62 6.82 -2.39 -0.02 0.60 16 36 H 0.07 1.82 6.70 -2.38 -0.02 1.80 16 37 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.07 1.73 3.12 -2.39 -0.01 1.72 16 39 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.09 2.46 5.06 -2.39 -0.01 2.45 16 41 H 0.08 2.71 6.44 -2.38 -0.02 2.69 16 42 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.04 1.63 3.28 -2.38 -0.01 1.63 16 44 H 0.07 2.43 6.67 -2.39 -0.02 2.41 16 45 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 46 H 0.08 2.32 6.86 -2.39 -0.02 2.31 16 47 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 48 H 0.08 1.01 5.96 -2.38 -0.01 0.99 16 49 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 50 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -73.52 365.13 -2.33 -75.85 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.85 Total: 19.83 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: 6.06 Total: -13.78 kcal Atomic # 7 Polarization: -136.99 SS G_CDS: -7.06 Total: -144.05 kcal Atomic # 8 Polarization: -86.00 SS G_CDS: -3.53 Total: -89.53 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.67 Total: 45.27 kcal Atomic # 16 Polarization: 106.74 SS G_CDS: -0.32 Total: 106.42 kcal Total: -73.52 -2.33 -75.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407973239.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.063 kcal (2) G-P(sol) polarization free energy of solvation -73.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds