Wall clock time and date at job start Tue Mar 31 2020 17:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.47032 * 2 1 4 4 C 1.46899 * 111.00302 * 299.06808 * 3 2 1 5 5 C 1.53696 * 109.26028 * 172.60838 * 4 3 2 6 6 H 1.09002 * 109.79748 * 294.42519 * 5 4 3 7 7 C 1.52998 * 109.70314 * 173.69089 * 5 4 3 8 8 N 1.47077 * 108.27603 * 54.08114 * 5 4 3 9 9 S 1.65599 * 120.88088 * 128.75527 * 8 5 4 10 10 O 1.42104 * 106.40256 * 335.03284 * 9 8 5 11 11 O 1.42096 * 106.40580 * 202.11202 * 9 8 5 12 12 N 1.65603 * 107.21795 * 88.56995 * 9 8 5 13 13 C 1.46497 * 120.00074 * 275.17670 * 12 9 8 14 14 C 1.46502 * 119.99663 * 95.17522 * 12 9 8 15 15 H 1.08999 * 109.47202 * 355.08015 * 14 12 9 16 16 C 1.52999 * 109.47216 * 115.08238 * 14 12 9 17 17 C 1.50708 * 109.46897 * 235.08332 * 14 12 9 18 18 H 1.08001 * 119.99980 * 359.97438 * 17 14 12 19 19 C 1.37873 * 119.99944 * 180.02562 * 17 14 12 20 20 N 1.31518 * 119.99676 * 0.02562 * 19 17 14 21 21 Si 1.86799 * 119.99971 * 179.97438 * 19 17 14 22 22 H 1.48501 * 109.47111 * 270.00048 * 21 19 17 23 23 H 1.48503 * 109.46900 * 30.00171 * 21 19 17 24 24 H 1.48499 * 109.46898 * 149.99900 * 21 19 17 25 25 C 1.47079 * 118.24052 * 308.48821 * 8 5 4 26 26 C 1.46903 * 110.99988 * 174.77054 * 3 2 1 27 27 H 1.09000 * 109.49441 * 67.28880 * 26 3 2 28 28 C 1.53010 * 109.51305 * 307.22566 * 26 3 2 29 29 H 1.08998 * 109.47090 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47288 * 300.00316 * 1 2 3 31 31 H 1.09006 * 109.46889 * 59.99830 * 1 2 3 32 32 H 1.09000 * 109.47330 * 240.00230 * 2 1 3 33 33 H 1.08998 * 109.47500 * 120.00043 * 2 1 3 34 34 H 1.09002 * 109.49278 * 292.71169 * 4 3 2 35 35 H 1.09003 * 109.49017 * 52.76222 * 4 3 2 36 36 H 1.08995 * 109.47005 * 306.84292 * 7 5 4 37 37 H 1.09000 * 109.47269 * 66.84346 * 7 5 4 38 38 H 1.08999 * 109.47248 * 186.84427 * 7 5 4 39 39 H 1.09008 * 109.46669 * 275.51080 * 13 12 9 40 40 H 1.09000 * 109.47358 * 35.51258 * 13 12 9 41 41 H 1.09002 * 109.46931 * 155.51596 * 13 12 9 42 42 H 1.08999 * 109.47216 * 59.99786 * 16 14 12 43 43 H 1.08996 * 109.47134 * 179.97438 * 16 14 12 44 44 H 1.09001 * 109.47008 * 299.99810 * 16 14 12 45 45 H 0.97004 * 119.99545 * 180.02562 * 20 19 17 46 46 H 1.09003 * 109.62951 * 171.16498 * 25 8 5 47 47 H 1.09000 * 109.62594 * 291.55382 * 25 8 5 48 48 H 1.09004 * 109.46763 * 305.28097 * 28 26 3 49 49 H 1.08999 * 109.46816 * 65.27652 * 28 26 3 50 50 H 1.08998 * 109.46877 * 185.27948 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5669 2.1035 -1.1987 5 6 1.9409 3.5888 -1.0709 6 1 1.3849 4.0401 -0.2490 7 6 1.6163 4.3166 -2.3770 8 7 3.3836 3.6796 -0.8000 9 16 4.3589 4.6622 -1.7086 10 8 3.7139 4.8164 -2.9654 11 8 5.6795 4.1564 -1.5696 12 7 4.3526 6.1558 -0.9934 13 6 3.2855 7.1110 -1.3017 14 6 5.4141 6.5219 -0.0525 15 1 6.0622 5.6620 0.1166 16 6 6.2363 7.6737 -0.6341 17 6 4.8001 6.9528 1.2547 18 1 3.7266 6.9543 1.3725 19 6 5.6089 7.3461 2.2997 20 7 6.9162 7.3458 2.1556 21 14 4.8479 7.8810 3.9196 22 1 4.5971 9.3443 3.8895 23 1 3.5643 7.1628 4.1244 24 1 5.7773 7.5608 5.0327 25 6 3.9363 2.8790 0.3032 26 6 3.4828 1.4261 0.1250 27 1 3.9365 1.0111 -0.7750 28 6 3.9152 0.6036 1.3406 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.0474 1.6791 -2.0803 35 1 0.4851 2.0085 -1.2927 36 1 2.0884 3.7959 -3.2100 37 1 0.5365 4.3342 -2.5245 38 1 1.9929 5.3383 -2.3268 39 1 3.5366 7.6548 -2.2124 40 1 2.3478 6.5743 -1.4457 41 1 3.1782 7.8148 -0.4762 42 1 5.5882 8.5336 -0.8031 43 1 7.0258 7.9463 0.0662 44 1 6.6804 7.3620 -1.5794 45 1 7.4852 7.6221 2.8910 46 1 5.0250 2.9280 0.2816 47 1 3.5711 3.2655 1.2547 48 1 3.3895 0.9605 2.2263 49 1 3.6740 -0.4462 1.1733 50 1 4.9898 0.7106 1.4880 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407973240.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:59 Heat of formation + Delta-G solvation = -42.820852 kcal Electronic energy + Delta-G solvation = -30142.292929 eV Core-core repulsion = 26332.570868 eV Total energy + Delta-G solvation = -3809.722061 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.46407 -37.08724 -36.15356 -35.48478 -35.14472 -33.29067 -32.58675 -30.59991 -29.26096 -28.94846 -25.91456 -25.54943 -25.20508 -24.97077 -22.02368 -21.70592 -20.72521 -19.97619 -18.22086 -17.05369 -16.78316 -16.33487 -16.03418 -15.80805 -15.20292 -14.99282 -14.64571 -14.44997 -14.29584 -13.66101 -13.48438 -13.17789 -13.11846 -12.83804 -12.68764 -12.43534 -12.30384 -11.97946 -11.93584 -11.90217 -11.79403 -11.59901 -11.45963 -11.23884 -11.20284 -11.18153 -10.95689 -10.84565 -10.82785 -10.70914 -10.64064 -10.40221 -10.17404 -9.97816 -9.82908 -9.23747 -8.80206 -8.48132 -8.25158 -7.92004 -6.08745 -4.16919 1.23647 3.25147 3.32660 3.34332 3.43275 3.80043 4.12304 4.36359 4.72674 4.77474 4.82384 4.98878 5.09111 5.15632 5.21973 5.29203 5.30337 5.36671 5.37886 5.50632 5.56466 5.61309 5.71014 5.73985 5.80659 5.85771 5.90275 5.94670 6.05540 6.06678 6.13999 6.21917 6.27499 6.38297 6.45400 6.65940 6.73870 6.83523 6.89575 6.96457 7.08234 7.09421 7.12791 7.52054 7.63724 7.79137 8.06129 8.27360 8.86165 9.49286 10.96389 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012690 B = 0.004935 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.903647 B = 5671.957969 C = 6654.638243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 N -0.532 5.532 4 C 0.048 3.952 5 C 0.158 3.842 6 H 0.080 0.920 7 C -0.179 4.179 8 N -1.005 6.005 9 S 2.775 3.225 10 O -0.992 6.992 11 O -0.983 6.983 12 N -0.989 5.989 13 C 0.101 3.899 14 C 0.268 3.732 15 H 0.058 0.942 16 C -0.145 4.145 17 C -0.523 4.523 18 H 0.063 0.937 19 C 0.065 3.935 20 N -0.887 5.887 21 Si 0.896 3.104 22 H -0.281 1.281 23 H -0.274 1.274 24 H -0.286 1.286 25 C 0.133 3.867 26 C 0.072 3.928 27 H 0.043 0.957 28 C -0.147 4.147 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.028 0.972 33 H 0.080 0.920 34 H 0.036 0.964 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.058 0.942 38 H 0.084 0.916 39 H 0.042 0.958 40 H 0.051 0.949 41 H 0.083 0.917 42 H 0.032 0.968 43 H 0.093 0.907 44 H 0.010 0.990 45 H 0.263 0.737 46 H 0.096 0.904 47 H 0.079 0.921 48 H 0.068 0.932 49 H 0.056 0.944 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.163 -11.179 -4.119 16.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.081 4.081 3 N -0.257 5.257 4 C -0.082 4.082 5 C 0.051 3.949 6 H 0.098 0.902 7 C -0.238 4.238 8 N -0.843 5.843 9 S 2.787 3.213 10 O -0.976 6.976 11 O -0.968 6.968 12 N -0.831 5.831 13 C -0.046 4.046 14 C 0.165 3.835 15 H 0.075 0.925 16 C -0.205 4.205 17 C -0.563 4.563 18 H 0.081 0.919 19 C -0.138 4.138 20 N -0.525 5.525 21 Si 0.724 3.276 22 H -0.207 1.207 23 H -0.199 1.199 24 H -0.212 1.212 25 C 0.007 3.993 26 C -0.038 4.038 27 H 0.061 0.939 28 C -0.205 4.205 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.099 0.901 34 H 0.054 0.946 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.102 0.898 42 H 0.051 0.949 43 H 0.111 0.889 44 H 0.029 0.971 45 H 0.073 0.927 46 H 0.115 0.885 47 H 0.097 0.903 48 H 0.087 0.913 49 H 0.075 0.925 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.680 -11.142 -4.405 16.050 hybrid contribution -0.249 0.063 0.631 0.681 sum -10.929 -11.079 -3.774 16.013 Atomic orbital electron populations 1.21840 0.95064 1.01352 1.02536 1.22146 0.95812 0.89346 1.00829 1.61957 1.10694 1.13989 1.39062 1.22640 1.00640 0.94054 0.90846 1.21126 0.80749 0.94951 0.98089 0.90242 1.22864 1.01297 1.02947 0.96661 1.58360 1.18210 1.59374 1.48351 1.02126 0.72414 0.72933 0.73800 1.93662 1.75632 1.86575 1.41719 1.93542 1.36576 1.79663 1.86969 1.57769 1.35515 1.29087 1.60754 1.21366 0.88195 0.93947 1.01047 1.18717 0.83583 0.95432 0.85775 0.92455 1.22078 1.01254 0.98785 0.98406 1.21352 0.93453 1.45113 0.96358 0.91863 1.24917 0.94797 0.95371 0.98712 1.69889 1.02895 1.47466 1.32266 0.86540 0.79070 0.78880 0.83140 1.20706 1.19889 1.21200 1.21495 0.99130 0.88434 0.90223 1.21970 0.87271 0.96528 0.98068 0.93925 1.21885 1.01891 0.98930 0.97834 0.92525 0.91731 0.92644 0.95371 0.90150 0.94588 0.89595 0.89523 0.92326 0.89803 0.93970 0.93071 0.89801 0.94925 0.88888 0.97052 0.92672 0.88539 0.90300 0.91253 0.92538 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.72 37.16 0.36 -0.91 16 2 C 0.05 0.46 5.29 -3.82 -0.02 0.44 16 3 N -0.53 -6.56 4.51 -226.04 -1.02 -7.58 16 4 C 0.05 0.59 4.73 -3.46 -0.02 0.57 16 5 C 0.16 2.23 3.69 -67.26 -0.25 1.98 16 6 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 7 C -0.18 -2.49 7.52 37.16 0.28 -2.21 16 8 N -1.00 -16.91 3.38 -105.95 -0.36 -17.27 16 9 S 2.78 55.25 5.82 -107.50 -0.63 54.62 16 10 O -0.99 -19.53 12.16 -57.17 -0.70 -20.23 16 11 O -0.98 -22.74 15.19 -57.17 -0.87 -23.61 16 12 N -0.99 -20.66 3.12 -115.85 -0.36 -21.03 16 13 C 0.10 1.80 9.25 59.85 0.55 2.35 16 14 C 0.27 6.57 2.61 -69.08 -0.18 6.39 16 15 H 0.06 1.56 6.87 -51.93 -0.36 1.20 16 16 C -0.15 -3.52 9.04 37.16 0.34 -3.18 16 17 C -0.52 -13.36 7.91 -34.44 -0.27 -13.63 16 18 H 0.06 1.58 7.09 -52.49 -0.37 1.21 16 19 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 20 N -0.89 -24.26 11.32 55.43 0.63 -23.63 16 21 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 25 C 0.13 2.15 5.95 -3.60 -0.02 2.13 16 26 C 0.07 0.96 2.60 -67.58 -0.18 0.78 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 C -0.15 -1.64 8.53 37.16 0.32 -1.32 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.46 6.27 -51.93 -0.33 0.14 16 32 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.75 6.01 -51.93 -0.31 0.44 16 34 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.89 5.98 -51.93 -0.31 0.58 16 36 H 0.09 1.32 6.64 -51.93 -0.34 0.97 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 1.27 3.08 -51.93 -0.16 1.11 16 39 H 0.04 0.71 8.14 -51.92 -0.42 0.28 16 40 H 0.05 0.78 5.28 -51.93 -0.27 0.51 16 41 H 0.08 1.54 6.74 -51.93 -0.35 1.19 16 42 H 0.03 0.73 7.80 -51.93 -0.40 0.33 16 43 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 44 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 46 H 0.10 1.69 6.91 -51.93 -0.36 1.34 16 47 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 48 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 49 H 0.06 0.53 6.54 -51.93 -0.34 0.19 16 50 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 375.80 15.07 5.66 5.66 Total: -1.00 -29.66 375.80 -10.27 -39.93 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -8.43 Total: 2.82 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: 0.82 Total: -5.00 kcal Atomic # 7 Polarization: -68.39 SS G_CDS: -1.11 Total: -69.51 kcal Atomic # 8 Polarization: -42.27 SS G_CDS: -1.56 Total: -43.83 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 55.25 SS G_CDS: -0.63 Total: 54.62 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.66 -10.27 -39.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407973240.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.888 kcal (2) G-P(sol) polarization free energy of solvation -29.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds