Wall clock time and date at job start Tue Mar 31 2020 17:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.47032 * 2 1 4 4 C 1.46899 * 111.00302 * 299.06808 * 3 2 1 5 5 C 1.53696 * 109.26028 * 172.60838 * 4 3 2 6 6 H 1.09002 * 109.79748 * 294.42519 * 5 4 3 7 7 C 1.52998 * 109.70314 * 173.69089 * 5 4 3 8 8 N 1.47077 * 108.27603 * 54.08114 * 5 4 3 9 9 S 1.65599 * 120.88088 * 128.75527 * 8 5 4 10 10 O 1.42104 * 106.40256 * 335.03284 * 9 8 5 11 11 O 1.42096 * 106.40580 * 202.11202 * 9 8 5 12 12 N 1.65603 * 107.21795 * 88.56995 * 9 8 5 13 13 C 1.46497 * 120.00074 * 275.17670 * 12 9 8 14 14 C 1.46502 * 119.99663 * 95.17522 * 12 9 8 15 15 H 1.08999 * 109.47202 * 355.08015 * 14 12 9 16 16 C 1.52999 * 109.47216 * 115.08238 * 14 12 9 17 17 C 1.50708 * 109.46897 * 235.08332 * 14 12 9 18 18 H 1.08001 * 119.99980 * 359.97438 * 17 14 12 19 19 C 1.37873 * 119.99944 * 180.02562 * 17 14 12 20 20 N 1.31518 * 119.99676 * 0.02562 * 19 17 14 21 21 Si 1.86799 * 119.99971 * 179.97438 * 19 17 14 22 22 H 1.48501 * 109.47111 * 270.00048 * 21 19 17 23 23 H 1.48503 * 109.46900 * 30.00171 * 21 19 17 24 24 H 1.48499 * 109.46898 * 149.99900 * 21 19 17 25 25 C 1.47079 * 118.24052 * 308.48821 * 8 5 4 26 26 C 1.46903 * 110.99988 * 174.77054 * 3 2 1 27 27 H 1.09000 * 109.49441 * 67.28880 * 26 3 2 28 28 C 1.53010 * 109.51305 * 307.22566 * 26 3 2 29 29 H 1.08998 * 109.47090 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47288 * 300.00316 * 1 2 3 31 31 H 1.09006 * 109.46889 * 59.99830 * 1 2 3 32 32 H 1.09000 * 109.47330 * 240.00230 * 2 1 3 33 33 H 1.08998 * 109.47500 * 120.00043 * 2 1 3 34 34 H 1.09002 * 109.49278 * 292.71169 * 4 3 2 35 35 H 1.09003 * 109.49017 * 52.76222 * 4 3 2 36 36 H 1.08995 * 109.47005 * 306.84292 * 7 5 4 37 37 H 1.09000 * 109.47269 * 66.84346 * 7 5 4 38 38 H 1.08999 * 109.47248 * 186.84427 * 7 5 4 39 39 H 1.09008 * 109.46669 * 275.51080 * 13 12 9 40 40 H 1.09000 * 109.47358 * 35.51258 * 13 12 9 41 41 H 1.09002 * 109.46931 * 155.51596 * 13 12 9 42 42 H 1.08999 * 109.47216 * 59.99786 * 16 14 12 43 43 H 1.08996 * 109.47134 * 179.97438 * 16 14 12 44 44 H 1.09001 * 109.47008 * 299.99810 * 16 14 12 45 45 H 0.97004 * 119.99545 * 180.02562 * 20 19 17 46 46 H 1.09003 * 109.62951 * 171.16498 * 25 8 5 47 47 H 1.09000 * 109.62594 * 291.55382 * 25 8 5 48 48 H 1.09004 * 109.46763 * 305.28097 * 28 26 3 49 49 H 1.08999 * 109.46816 * 65.27652 * 28 26 3 50 50 H 1.08998 * 109.46877 * 185.27948 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5669 2.1035 -1.1987 5 6 1.9409 3.5888 -1.0709 6 1 1.3849 4.0401 -0.2490 7 6 1.6163 4.3166 -2.3770 8 7 3.3836 3.6796 -0.8000 9 16 4.3589 4.6622 -1.7086 10 8 3.7139 4.8164 -2.9654 11 8 5.6795 4.1564 -1.5696 12 7 4.3526 6.1558 -0.9934 13 6 3.2855 7.1110 -1.3017 14 6 5.4141 6.5219 -0.0525 15 1 6.0622 5.6620 0.1166 16 6 6.2363 7.6737 -0.6341 17 6 4.8001 6.9528 1.2547 18 1 3.7266 6.9543 1.3725 19 6 5.6089 7.3461 2.2997 20 7 6.9162 7.3458 2.1556 21 14 4.8479 7.8810 3.9196 22 1 4.5971 9.3443 3.8895 23 1 3.5643 7.1628 4.1244 24 1 5.7773 7.5608 5.0327 25 6 3.9363 2.8790 0.3032 26 6 3.4828 1.4261 0.1250 27 1 3.9365 1.0111 -0.7750 28 6 3.9152 0.6036 1.3406 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.0474 1.6791 -2.0803 35 1 0.4851 2.0085 -1.2927 36 1 2.0884 3.7959 -3.2100 37 1 0.5365 4.3342 -2.5245 38 1 1.9929 5.3383 -2.3268 39 1 3.5366 7.6548 -2.2124 40 1 2.3478 6.5743 -1.4457 41 1 3.1782 7.8148 -0.4762 42 1 5.5882 8.5336 -0.8031 43 1 7.0258 7.9463 0.0662 44 1 6.6804 7.3620 -1.5794 45 1 7.4852 7.6221 2.8910 46 1 5.0250 2.9280 0.2816 47 1 3.5711 3.2655 1.2547 48 1 3.3895 0.9605 2.2263 49 1 3.6740 -0.4462 1.1733 50 1 4.9898 0.7106 1.4880 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407973240.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:58 Heat of formation + Delta-G solvation = -63.110538 kcal Electronic energy + Delta-G solvation = -30143.172756 eV Core-core repulsion = 26332.570868 eV Total energy + Delta-G solvation = -3810.601888 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.53235 -38.66530 -37.92268 -36.97820 -36.45975 -34.51497 -34.33879 -31.58393 -30.99791 -30.05364 -27.23287 -27.06337 -26.97505 -26.10604 -23.04994 -22.79811 -22.53570 -21.03684 -19.77041 -18.68352 -18.36851 -18.00473 -17.43097 -16.91406 -16.74765 -16.18823 -16.02275 -15.61823 -15.38527 -15.18567 -14.88866 -14.62437 -14.56493 -14.22782 -14.07306 -13.65278 -13.50925 -13.36106 -13.31823 -13.19489 -13.00915 -12.90989 -12.79476 -12.75630 -12.68223 -12.64950 -12.44735 -12.23500 -12.20734 -12.09856 -12.01349 -11.95955 -11.60904 -11.47467 -11.12422 -11.09474 -10.49685 -10.07784 -9.63462 -9.25159 -8.08409 -6.23179 -0.32907 1.46172 1.47796 1.57051 1.95226 2.45672 2.56287 2.83934 3.20151 3.35429 3.55645 3.83389 3.94941 4.03638 4.08705 4.18725 4.26796 4.33085 4.44034 4.49147 4.57506 4.62407 4.67475 4.70758 4.76955 4.80123 4.82662 4.88606 4.89643 4.93508 4.98676 5.06681 5.08809 5.15502 5.18860 5.20792 5.25378 5.33762 5.41769 5.52815 5.60052 5.61798 5.76264 5.88701 6.08705 6.10990 6.18142 6.29538 6.85777 7.46406 8.96520 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012690 B = 0.004935 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.903647 B = 5671.957969 C = 6654.638243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.044 3.956 3 N -0.536 5.536 4 C 0.050 3.950 5 C 0.152 3.848 6 H 0.087 0.913 7 C -0.178 4.178 8 N -1.001 6.001 9 S 2.783 3.217 10 O -0.991 6.991 11 O -1.022 7.022 12 N -0.997 5.997 13 C 0.095 3.905 14 C 0.274 3.726 15 H 0.022 0.978 16 C -0.139 4.139 17 C -0.527 4.527 18 H 0.069 0.931 19 C 0.017 3.983 20 N -0.918 5.918 21 Si 0.959 3.041 22 H -0.276 1.276 23 H -0.266 1.266 24 H -0.288 1.288 25 C 0.130 3.870 26 C 0.076 3.924 27 H 0.033 0.967 28 C -0.142 4.142 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.029 0.971 33 H 0.088 0.912 34 H 0.029 0.971 35 H 0.113 0.887 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.051 0.949 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.043 0.957 43 H 0.071 0.929 44 H 0.014 0.986 45 H 0.263 0.737 46 H 0.072 0.928 47 H 0.074 0.926 48 H 0.069 0.931 49 H 0.077 0.923 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.103 -12.046 -3.720 18.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.083 4.083 3 N -0.262 5.262 4 C -0.079 4.079 5 C 0.046 3.954 6 H 0.105 0.895 7 C -0.236 4.236 8 N -0.842 5.842 9 S 2.796 3.204 10 O -0.975 6.975 11 O -1.007 7.007 12 N -0.838 5.838 13 C -0.050 4.050 14 C 0.170 3.830 15 H 0.039 0.961 16 C -0.199 4.199 17 C -0.566 4.566 18 H 0.087 0.913 19 C -0.182 4.182 20 N -0.557 5.557 21 Si 0.785 3.215 22 H -0.202 1.202 23 H -0.191 1.191 24 H -0.214 1.214 25 C 0.005 3.995 26 C -0.034 4.034 27 H 0.051 0.949 28 C -0.200 4.200 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.047 0.953 33 H 0.107 0.893 34 H 0.047 0.953 35 H 0.131 0.869 36 H 0.090 0.910 37 H 0.113 0.887 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.062 0.938 43 H 0.089 0.911 44 H 0.033 0.967 45 H 0.072 0.928 46 H 0.091 0.909 47 H 0.092 0.908 48 H 0.088 0.912 49 H 0.096 0.904 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.644 -12.002 -4.028 18.613 hybrid contribution 0.616 0.285 0.448 0.813 sum -13.028 -11.718 -3.580 17.884 Atomic orbital electron populations 1.21807 0.93601 1.02462 1.02408 1.22256 0.96960 0.87785 1.01267 1.61979 1.09558 1.15666 1.39001 1.22653 1.02138 0.92501 0.90606 1.21412 0.78768 0.96695 0.98530 0.89513 1.22802 1.03488 1.01584 0.95725 1.58177 1.19387 1.58493 1.48137 1.01768 0.71885 0.72776 0.73985 1.93679 1.75192 1.86637 1.41966 1.93487 1.39341 1.80290 1.87547 1.57694 1.35652 1.30347 1.60105 1.21564 0.88502 0.93804 1.01165 1.18366 0.84165 0.93942 0.86569 0.96063 1.21969 1.00842 0.99190 0.97918 1.21568 0.93675 1.44571 0.96791 0.91332 1.25679 0.95118 0.95519 1.01904 1.70026 1.04151 1.48411 1.33154 0.85543 0.78328 0.78560 0.79078 1.20179 1.19068 1.21395 1.21531 0.97871 0.90421 0.89726 1.21879 0.88347 0.94500 0.98706 0.94904 1.21859 1.01685 0.99754 0.96714 0.90886 0.92137 0.92387 0.95287 0.89344 0.95308 0.86892 0.91023 0.88749 0.91226 0.93037 0.90331 0.90357 0.93797 0.91066 0.96653 0.92751 0.90942 0.90770 0.91151 0.90392 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.72 71.98 0.70 -1.27 16 2 C 0.04 0.76 5.29 86.30 0.46 1.22 16 3 N -0.54 -12.13 4.51 -869.06 -3.92 -16.05 16 4 C 0.05 1.13 4.73 86.54 0.41 1.54 16 5 C 0.15 4.02 3.69 45.11 0.17 4.18 16 6 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 7 C -0.18 -4.53 7.52 71.98 0.54 -3.98 16 8 N -1.00 -33.61 3.38 -489.11 -1.65 -35.26 16 9 S 2.78 112.58 5.82 -56.49 -0.33 112.25 16 10 O -0.99 -38.74 12.16 -128.00 -1.56 -40.29 16 11 O -1.02 -49.43 15.19 -128.00 -1.94 -51.38 16 12 N -1.00 -41.98 3.12 -520.43 -1.62 -43.61 16 13 C 0.09 3.29 9.25 127.77 1.18 4.47 16 14 C 0.27 13.79 2.61 44.25 0.12 13.90 16 15 H 0.02 1.23 6.87 -2.39 -0.02 1.21 16 16 C -0.14 -6.90 9.04 71.98 0.65 -6.25 16 17 C -0.53 -27.07 7.91 25.60 0.20 -26.87 16 18 H 0.07 3.38 7.09 -2.91 -0.02 3.36 16 19 C 0.02 0.92 5.30 84.65 0.45 1.37 16 20 N -0.92 -51.34 11.32 21.45 0.24 -51.10 16 21 Si 0.96 41.56 29.54 68.60 2.03 43.58 16 22 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 23 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 24 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 25 C 0.13 4.30 5.95 86.35 0.51 4.81 16 26 C 0.08 1.99 2.60 45.00 0.12 2.10 16 27 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 28 C -0.14 -2.99 8.53 71.99 0.61 -2.38 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.76 6.27 -2.38 -0.01 0.74 16 32 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.09 1.38 6.01 -2.39 -0.01 1.37 16 34 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.11 1.93 5.98 -2.39 -0.01 1.91 16 36 H 0.07 2.06 6.64 -2.39 -0.02 2.05 16 37 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.07 1.98 3.08 -2.39 -0.01 1.97 16 39 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 40 H 0.08 2.27 5.28 -2.39 -0.01 2.26 16 41 H 0.08 2.80 6.74 -2.39 -0.02 2.78 16 42 H 0.04 2.00 7.80 -2.39 -0.02 1.98 16 43 H 0.07 3.84 6.07 -2.39 -0.01 3.83 16 44 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 46 H 0.07 2.71 6.91 -2.39 -0.02 2.69 16 47 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 48 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 49 H 0.08 1.30 6.54 -2.39 -0.02 1.29 16 50 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -64.59 375.80 -1.72 -66.31 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 0.92 Total: 22.69 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 6.12 Total: -7.16 kcal Atomic # 7 Polarization: -139.06 SS G_CDS: -6.96 Total: -146.02 kcal Atomic # 8 Polarization: -88.17 SS G_CDS: -3.50 Total: -91.67 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 16 Polarization: 112.58 SS G_CDS: -0.33 Total: 112.25 kcal Total: -64.59 -1.72 -66.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407973240.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.203 kcal (2) G-P(sol) polarization free energy of solvation -64.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds