Wall clock time and date at job start Tue Mar 31 2020 17:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46969 * 2 1 4 4 C 1.50696 * 109.47488 * 239.99766 * 2 1 3 5 5 H 1.08002 * 119.99969 * 245.17635 * 4 2 1 6 6 C 1.37879 * 120.00091 * 65.17450 * 4 2 1 7 7 N 1.31515 * 119.99664 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99971 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47133 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46680 * 120.00159 * 8 6 4 11 11 H 1.48493 * 109.47475 * 240.00241 * 8 6 4 12 12 N 1.46505 * 109.46683 * 119.99455 * 2 1 3 13 13 C 1.46498 * 119.99977 * 55.33008 * 12 2 1 14 14 S 1.65592 * 119.99912 * 235.32377 * 12 2 1 15 15 O 1.42102 * 106.40307 * 162.38055 * 14 12 2 16 16 O 1.42103 * 106.40399 * 29.46218 * 14 12 2 17 17 N 1.65600 * 107.22230 * 275.91902 * 14 12 2 18 18 C 1.46497 * 120.00027 * 296.68333 * 17 14 12 19 19 H 1.09003 * 109.46783 * 24.21706 * 18 17 14 20 20 C 1.52998 * 109.47318 * 264.21516 * 18 17 14 21 21 C 1.52997 * 109.47075 * 299.99861 * 20 18 17 22 22 C 1.52994 * 109.47416 * 299.99982 * 21 20 18 23 23 C 1.53002 * 109.47328 * 59.99958 * 22 21 20 24 24 H 1.09004 * 109.47062 * 59.99592 * 23 22 21 25 25 N 1.46899 * 109.47818 * 180.02562 * 23 22 21 26 26 C 1.46893 * 110.99695 * 295.00457 * 25 23 22 27 27 C 1.46907 * 110.99739 * 58.95364 * 25 23 22 28 28 C 1.53003 * 109.47123 * 144.21067 * 18 17 14 29 29 H 1.09007 * 109.46915 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47575 * 300.00185 * 1 2 3 31 31 H 1.09003 * 109.47188 * 60.00498 * 1 2 3 32 32 H 0.96999 * 119.99344 * 179.97438 * 7 6 4 33 33 H 1.08995 * 109.47403 * 269.99682 * 13 12 2 34 34 H 1.09003 * 109.47402 * 29.99612 * 13 12 2 35 35 H 1.08999 * 109.46961 * 149.99355 * 13 12 2 36 36 H 0.97000 * 120.00261 * 116.68359 * 17 14 12 37 37 H 1.09004 * 109.46940 * 179.97438 * 20 18 17 38 38 H 1.09002 * 109.46908 * 59.99901 * 20 18 17 39 39 H 1.09000 * 109.47077 * 179.97438 * 21 20 18 40 40 H 1.08996 * 109.47217 * 59.99999 * 21 20 18 41 41 H 1.08990 * 109.47492 * 180.02562 * 22 21 20 42 42 H 1.09007 * 109.47284 * 300.00511 * 22 21 20 43 43 H 1.09003 * 109.47550 * 59.99705 * 26 25 23 44 44 H 1.09000 * 109.47103 * 179.97438 * 26 25 23 45 45 H 1.08997 * 109.47018 * 299.99593 * 26 25 23 46 46 H 1.08997 * 109.47117 * 59.99835 * 27 25 23 47 47 H 1.08997 * 109.46933 * 180.02562 * 27 25 23 48 48 H 1.09008 * 109.46900 * 300.00100 * 27 25 23 49 49 H 1.09001 * 109.47001 * 179.97438 * 28 18 17 50 50 H 1.08996 * 109.47213 * 300.00785 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5827 -1.6347 -1.1334 6 6 1.7896 -0.1805 -2.4799 7 7 1.1200 0.9452 -2.5979 8 14 2.4130 -1.0608 -4.0049 9 1 3.1322 -2.2966 -3.6040 10 1 1.2636 -1.4176 -4.8750 11 1 3.3382 -0.1683 -4.7483 12 7 2.0182 -0.6905 1.1963 13 6 1.5819 -2.0597 1.4811 14 16 3.0634 0.0766 2.2265 15 8 3.0233 -0.6453 3.4498 16 8 2.7726 1.4644 2.1332 17 7 4.5895 -0.1236 1.6153 18 6 5.1644 -1.4666 1.5060 19 1 4.3617 -2.2019 1.4497 20 6 6.0320 -1.7515 2.7335 21 6 7.1586 -0.7194 2.8124 22 6 8.0181 -0.8048 1.5496 23 6 7.1505 -0.5199 0.3220 24 1 6.7227 0.4793 0.4034 25 7 7.9755 -0.6026 -0.8907 26 6 8.9971 0.4529 -0.9053 27 6 8.5892 -1.9310 -1.0203 28 6 6.0238 -1.5521 0.2430 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 0.9495 1.3182 -3.4769 33 1 0.6769 -2.0339 2.0879 34 1 1.3765 -2.5779 0.5444 35 1 2.3677 -2.5862 2.0228 36 1 5.1027 0.6484 1.3298 37 1 6.4594 -2.7510 2.6523 38 1 5.4197 -1.6905 3.6332 39 1 7.7765 -0.9221 3.6873 40 1 6.7309 0.2799 2.8938 41 1 8.8209 -0.0699 1.6060 42 1 8.4458 -1.8042 1.4681 43 1 9.6438 0.3447 -0.0345 44 1 9.5939 0.3683 -1.8134 45 1 8.5118 1.4285 -0.8785 46 1 7.8074 -2.6884 -1.0771 47 1 9.1947 -1.9647 -1.9260 48 1 9.2211 -2.1255 -0.1537 49 1 6.4519 -2.5513 0.1619 50 1 5.4057 -1.3491 -0.6315 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407973875.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:56 Heat of formation + Delta-G solvation = -77.642126 kcal Electronic energy + Delta-G solvation = -29932.363639 eV Core-core repulsion = 26121.131614 eV Total energy + Delta-G solvation = -3811.232025 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.81253 -36.72549 -36.31226 -36.07704 -35.19004 -32.78578 -32.55208 -30.00890 -29.11852 -28.85147 -27.58679 -25.56355 -25.08703 -24.33089 -22.56545 -21.01008 -20.72937 -19.60549 -18.37979 -17.28611 -16.79371 -16.32152 -15.96849 -15.79540 -15.15631 -14.95296 -14.64164 -14.48582 -14.34079 -13.99804 -13.43400 -13.25340 -13.05105 -12.97357 -12.63051 -12.44073 -12.22548 -11.99023 -11.95393 -11.78600 -11.75410 -11.62827 -11.44341 -11.34442 -11.18928 -11.15924 -11.04182 -10.97012 -10.82688 -10.61545 -10.47371 -10.34963 -10.25634 -10.09051 -10.02606 -9.33609 -9.06772 -8.46394 -8.24354 -7.94176 -6.07525 -4.14720 1.33234 3.27210 3.36039 3.37387 3.55262 3.89685 4.22293 4.38989 4.65142 4.73294 4.92784 5.06682 5.09296 5.12950 5.21156 5.25026 5.26103 5.36559 5.43285 5.45446 5.51818 5.55731 5.63667 5.72702 5.74483 5.83464 5.88559 5.94840 6.01166 6.11379 6.15744 6.18928 6.26393 6.34076 6.49377 6.58792 6.64887 6.85115 6.86131 7.02969 7.06045 7.12415 7.31472 7.54311 7.64074 7.79987 8.01931 8.26755 8.88819 9.51769 10.98782 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009870 B = 0.006038 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.102556 B = 4635.964775 C = 6583.652269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.269 3.731 3 H 0.060 0.940 4 C -0.522 4.522 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.284 1.284 12 N -0.991 5.991 13 C 0.105 3.895 14 S 2.783 3.217 15 O -1.000 7.000 16 O -0.986 6.986 17 N -1.118 6.118 18 C 0.166 3.834 19 H 0.085 0.915 20 C -0.139 4.139 21 C -0.111 4.111 22 C -0.153 4.153 23 C 0.085 3.915 24 H 0.084 0.916 25 N -0.538 5.538 26 C 0.022 3.978 27 C 0.018 3.982 28 C -0.118 4.118 29 H 0.033 0.967 30 H 0.014 0.986 31 H 0.083 0.917 32 H 0.262 0.738 33 H 0.042 0.958 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.410 0.590 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.026 0.974 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.063 0.937 48 H 0.027 0.973 49 H 0.070 0.930 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.269 -5.925 6.283 15.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.166 3.834 3 H 0.077 0.923 4 C -0.562 4.562 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.210 1.210 12 N -0.833 5.833 13 C -0.042 4.042 14 S 2.791 3.209 15 O -0.983 6.983 16 O -0.970 6.970 17 N -0.877 5.877 18 C 0.058 3.942 19 H 0.103 0.897 20 C -0.178 4.178 21 C -0.149 4.149 22 C -0.192 4.192 23 C -0.023 4.023 24 H 0.102 0.898 25 N -0.260 5.260 26 C -0.126 4.126 27 C -0.130 4.130 28 C -0.157 4.157 29 H 0.052 0.948 30 H 0.033 0.967 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.244 0.756 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.044 0.956 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.081 0.919 48 H 0.045 0.955 49 H 0.089 0.911 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 12.556 -5.409 6.584 15.174 hybrid contribution 1.200 -0.429 -0.820 1.515 sum 13.756 -5.839 5.764 16.017 Atomic orbital electron populations 1.21994 0.98150 0.99504 1.00319 1.18707 0.91727 0.92805 0.80190 0.92277 1.21390 1.35545 1.08982 0.90244 0.91867 1.24916 0.94989 0.94872 0.98962 1.69925 1.39832 1.18948 1.23848 0.86513 0.78485 0.79750 0.83046 1.19730 1.21224 1.20979 1.57706 1.60263 1.24424 1.40954 1.21215 0.98603 0.83065 1.01269 1.01784 0.72681 0.73080 0.73320 1.93533 1.86918 1.74666 1.43191 1.93588 1.83605 1.32535 1.87251 1.56085 1.35157 1.13592 1.82869 1.20563 0.95833 0.83473 0.94316 0.89702 1.22094 0.97529 0.98886 0.99287 1.21379 0.96623 1.00148 0.96782 1.22248 0.98905 1.01772 0.96270 1.21722 0.93293 1.00598 0.86705 0.89764 1.62192 1.22600 1.03475 1.37709 1.22397 0.94291 0.95563 1.00363 1.22470 0.99006 0.91339 1.00220 1.21889 0.96505 0.98668 0.98668 0.94770 0.96719 0.89847 0.92760 0.93974 0.90382 0.93027 0.75611 0.91379 0.90444 0.92271 0.91705 0.92183 0.91709 0.95577 0.91680 0.91304 0.90910 0.91855 0.95452 0.91117 0.89002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.95 37.16 0.33 -2.94 16 2 C 0.27 6.43 2.53 -69.08 -0.17 6.25 16 3 H 0.06 1.60 7.01 -51.93 -0.36 1.23 16 4 C -0.52 -13.03 8.07 -34.44 -0.28 -13.31 16 5 H 0.06 1.53 7.48 -52.49 -0.39 1.13 16 6 C 0.07 1.70 5.32 -17.82 -0.09 1.61 16 7 N -0.89 -24.36 11.71 55.43 0.65 -23.72 16 8 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 9 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.99 -20.00 3.12 -115.86 -0.36 -20.37 16 13 C 0.11 1.81 8.93 59.85 0.53 2.34 16 14 S 2.78 53.68 5.98 -107.50 -0.64 53.03 16 15 O -1.00 -19.82 16.40 -57.17 -0.94 -20.76 16 16 O -0.99 -22.51 16.85 -57.17 -0.96 -23.47 16 17 N -1.12 -17.53 4.80 -4.89 -0.02 -17.56 16 18 C 0.17 2.26 3.04 -67.93 -0.21 2.05 16 19 H 0.09 1.17 6.73 -51.93 -0.35 0.82 16 20 C -0.14 -1.64 5.64 -26.73 -0.15 -1.79 16 21 C -0.11 -1.20 5.76 -26.74 -0.15 -1.35 16 22 C -0.15 -1.57 4.51 -26.73 -0.12 -1.69 16 23 C 0.09 1.03 2.04 -67.71 -0.14 0.89 16 24 H 0.08 1.10 6.50 -51.93 -0.34 0.76 16 25 N -0.54 -6.50 5.01 -243.17 -1.22 -7.72 16 26 C 0.02 0.23 9.31 60.06 0.56 0.79 16 27 C 0.02 0.18 8.82 60.07 0.53 0.71 16 28 C -0.12 -1.54 4.71 -26.72 -0.13 -1.66 16 29 H 0.03 0.74 7.57 -51.92 -0.39 0.34 16 30 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 2.13 6.49 -51.93 -0.34 1.79 16 32 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.08 1.35 7.28 -51.93 -0.38 0.97 16 35 H 0.05 0.77 6.62 -51.93 -0.34 0.43 16 36 H 0.41 6.03 6.79 -34.47 -0.23 5.79 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 1.02 7.72 -51.93 -0.40 0.62 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.75 7.42 -51.93 -0.39 0.36 16 41 H 0.06 0.59 6.52 -51.93 -0.34 0.25 16 42 H 0.06 0.64 6.38 -51.93 -0.33 0.30 16 43 H 0.03 0.24 6.44 -51.93 -0.33 -0.09 16 44 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.07 0.75 6.32 -51.93 -0.33 0.43 16 47 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 48 H 0.03 0.25 6.28 -51.92 -0.33 -0.07 16 49 H 0.07 0.81 6.42 -51.93 -0.33 0.47 16 50 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 LS Contribution 381.74 15.07 5.75 5.75 Total: -1.00 -30.46 381.74 -10.68 -41.14 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -8.42 Total: 6.38 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: 0.51 Total: -8.10 kcal Atomic # 7 Polarization: -68.40 SS G_CDS: -0.95 Total: -69.36 kcal Atomic # 8 Polarization: -42.33 SS G_CDS: -1.90 Total: -44.23 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 53.68 SS G_CDS: -0.64 Total: 53.03 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.46 -10.68 -41.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407973875.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.502 kcal (2) G-P(sol) polarization free energy of solvation -30.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds