Wall clock time and date at job start Tue Mar 31 2020 17:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46969 * 2 1 4 4 C 1.50696 * 109.47488 * 239.99766 * 2 1 3 5 5 H 1.08002 * 119.99969 * 245.17635 * 4 2 1 6 6 C 1.37879 * 120.00091 * 65.17450 * 4 2 1 7 7 N 1.31515 * 119.99664 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99971 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47133 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46680 * 120.00159 * 8 6 4 11 11 H 1.48493 * 109.47475 * 240.00241 * 8 6 4 12 12 N 1.46505 * 109.46683 * 119.99455 * 2 1 3 13 13 C 1.46498 * 119.99977 * 55.33008 * 12 2 1 14 14 S 1.65592 * 119.99912 * 235.32377 * 12 2 1 15 15 O 1.42102 * 106.40307 * 162.38055 * 14 12 2 16 16 O 1.42103 * 106.40399 * 29.46218 * 14 12 2 17 17 N 1.65600 * 107.22230 * 275.91902 * 14 12 2 18 18 C 1.46497 * 120.00027 * 296.68333 * 17 14 12 19 19 H 1.09003 * 109.46783 * 24.21706 * 18 17 14 20 20 C 1.52998 * 109.47318 * 264.21516 * 18 17 14 21 21 C 1.52997 * 109.47075 * 299.99861 * 20 18 17 22 22 C 1.52994 * 109.47416 * 299.99982 * 21 20 18 23 23 C 1.53002 * 109.47328 * 59.99958 * 22 21 20 24 24 H 1.09004 * 109.47062 * 59.99592 * 23 22 21 25 25 N 1.46899 * 109.47818 * 180.02562 * 23 22 21 26 26 C 1.46893 * 110.99695 * 295.00457 * 25 23 22 27 27 C 1.46907 * 110.99739 * 58.95364 * 25 23 22 28 28 C 1.53003 * 109.47123 * 144.21067 * 18 17 14 29 29 H 1.09007 * 109.46915 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47575 * 300.00185 * 1 2 3 31 31 H 1.09003 * 109.47188 * 60.00498 * 1 2 3 32 32 H 0.96999 * 119.99344 * 179.97438 * 7 6 4 33 33 H 1.08995 * 109.47403 * 269.99682 * 13 12 2 34 34 H 1.09003 * 109.47402 * 29.99612 * 13 12 2 35 35 H 1.08999 * 109.46961 * 149.99355 * 13 12 2 36 36 H 0.97000 * 120.00261 * 116.68359 * 17 14 12 37 37 H 1.09004 * 109.46940 * 179.97438 * 20 18 17 38 38 H 1.09002 * 109.46908 * 59.99901 * 20 18 17 39 39 H 1.09000 * 109.47077 * 179.97438 * 21 20 18 40 40 H 1.08996 * 109.47217 * 59.99999 * 21 20 18 41 41 H 1.08990 * 109.47492 * 180.02562 * 22 21 20 42 42 H 1.09007 * 109.47284 * 300.00511 * 22 21 20 43 43 H 1.09003 * 109.47550 * 59.99705 * 26 25 23 44 44 H 1.09000 * 109.47103 * 179.97438 * 26 25 23 45 45 H 1.08997 * 109.47018 * 299.99593 * 26 25 23 46 46 H 1.08997 * 109.47117 * 59.99835 * 27 25 23 47 47 H 1.08997 * 109.46933 * 180.02562 * 27 25 23 48 48 H 1.09008 * 109.46900 * 300.00100 * 27 25 23 49 49 H 1.09001 * 109.47001 * 179.97438 * 28 18 17 50 50 H 1.08996 * 109.47213 * 300.00785 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5827 -1.6347 -1.1334 6 6 1.7896 -0.1805 -2.4799 7 7 1.1200 0.9452 -2.5979 8 14 2.4130 -1.0608 -4.0049 9 1 3.1322 -2.2966 -3.6040 10 1 1.2636 -1.4176 -4.8750 11 1 3.3382 -0.1683 -4.7483 12 7 2.0182 -0.6905 1.1963 13 6 1.5819 -2.0597 1.4811 14 16 3.0634 0.0766 2.2265 15 8 3.0233 -0.6453 3.4498 16 8 2.7726 1.4644 2.1332 17 7 4.5895 -0.1236 1.6153 18 6 5.1644 -1.4666 1.5060 19 1 4.3617 -2.2019 1.4497 20 6 6.0320 -1.7515 2.7335 21 6 7.1586 -0.7194 2.8124 22 6 8.0181 -0.8048 1.5496 23 6 7.1505 -0.5199 0.3220 24 1 6.7227 0.4793 0.4034 25 7 7.9755 -0.6026 -0.8907 26 6 8.9971 0.4529 -0.9053 27 6 8.5892 -1.9310 -1.0203 28 6 6.0238 -1.5521 0.2430 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 0.9495 1.3182 -3.4769 33 1 0.6769 -2.0339 2.0879 34 1 1.3765 -2.5779 0.5444 35 1 2.3677 -2.5862 2.0228 36 1 5.1027 0.6484 1.3298 37 1 6.4594 -2.7510 2.6523 38 1 5.4197 -1.6905 3.6332 39 1 7.7765 -0.9221 3.6873 40 1 6.7309 0.2799 2.8938 41 1 8.8209 -0.0699 1.6060 42 1 8.4458 -1.8042 1.4681 43 1 9.6438 0.3447 -0.0345 44 1 9.5939 0.3683 -1.8134 45 1 8.5118 1.4285 -0.8785 46 1 7.8074 -2.6884 -1.0771 47 1 9.1947 -1.9647 -1.9260 48 1 9.2211 -2.1255 -0.1537 49 1 6.4519 -2.5513 0.1619 50 1 5.4057 -1.3491 -0.6315 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407973875.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:55 Heat of formation + Delta-G solvation = -99.768442 kcal Electronic energy + Delta-G solvation = -29933.323108 eV Core-core repulsion = 26121.131614 eV Total energy + Delta-G solvation = -3812.191494 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.76969 -38.28815 -37.87110 -37.32530 -36.84535 -34.45650 -33.84661 -31.00837 -30.92554 -29.86678 -28.39453 -27.26763 -26.91410 -25.20071 -23.52306 -22.57340 -21.94552 -20.84385 -19.65768 -18.77496 -18.41218 -18.16915 -17.23174 -16.93907 -16.64961 -16.16930 -15.84754 -15.50570 -15.34164 -15.15816 -14.95055 -14.82635 -14.45001 -14.11857 -13.83852 -13.72029 -13.48218 -13.38931 -13.20811 -13.14895 -13.09751 -12.92743 -12.80314 -12.72592 -12.67046 -12.63187 -12.49438 -12.29768 -12.18113 -12.14173 -12.01839 -11.83012 -11.52439 -11.43117 -11.16918 -11.02730 -10.48166 -10.33240 -9.63001 -9.08654 -8.06648 -6.19140 -0.21792 1.45541 1.49381 1.58188 2.05343 2.48653 2.66882 3.06640 3.24304 3.50094 3.73092 3.81553 3.99478 4.09184 4.20529 4.21954 4.33843 4.38909 4.50004 4.53140 4.59746 4.63649 4.71050 4.72227 4.74346 4.81465 4.86790 4.96817 4.97646 5.02422 5.04013 5.09164 5.16063 5.16555 5.21041 5.25043 5.28253 5.36544 5.48038 5.55768 5.62976 5.69386 5.88737 6.06661 6.19172 6.20702 6.21643 6.31403 6.90959 7.50438 8.99543 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009870 B = 0.006038 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.102556 B = 4635.964775 C = 6583.652269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.275 3.725 3 H 0.022 0.978 4 C -0.518 4.518 5 H 0.072 0.928 6 C 0.017 3.983 7 N -0.921 5.921 8 Si 0.953 3.047 9 H -0.260 1.260 10 H -0.286 1.286 11 H -0.290 1.290 12 N -0.996 5.996 13 C 0.098 3.902 14 S 2.797 3.203 15 O -1.002 7.002 16 O -1.026 7.026 17 N -1.110 6.110 18 C 0.159 3.841 19 H 0.084 0.916 20 C -0.134 4.134 21 C -0.112 4.112 22 C -0.141 4.141 23 C 0.085 3.915 24 H 0.066 0.934 25 N -0.561 5.561 26 C 0.023 3.977 27 C 0.018 3.982 28 C -0.111 4.111 29 H 0.049 0.951 30 H 0.020 0.980 31 H 0.058 0.942 32 H 0.261 0.739 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.414 0.586 37 H 0.093 0.907 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.039 0.961 44 H 0.072 0.928 45 H 0.059 0.941 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.041 0.959 49 H 0.091 0.909 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.219 -8.162 6.729 18.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.170 3.830 3 H 0.040 0.960 4 C -0.557 4.557 5 H 0.090 0.910 6 C -0.182 4.182 7 N -0.561 5.561 8 Si 0.780 3.220 9 H -0.184 1.184 10 H -0.212 1.212 11 H -0.216 1.216 12 N -0.838 5.838 13 C -0.048 4.048 14 S 2.806 3.194 15 O -0.986 6.986 16 O -1.010 7.010 17 N -0.872 5.872 18 C 0.052 3.948 19 H 0.102 0.898 20 C -0.173 4.173 21 C -0.150 4.150 22 C -0.180 4.180 23 C -0.023 4.023 24 H 0.084 0.916 25 N -0.284 5.284 26 C -0.125 4.125 27 C -0.130 4.130 28 C -0.150 4.150 29 H 0.068 0.932 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.249 0.751 37 H 0.111 0.889 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.057 0.943 44 H 0.091 0.909 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.059 0.941 49 H 0.110 0.890 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.509 -7.674 7.050 17.864 hybrid contribution 0.628 0.255 -0.919 1.142 sum 15.138 -7.418 6.131 17.938 Atomic orbital electron populations 1.21881 0.97908 1.00141 0.99422 1.18359 0.91900 0.91282 0.81437 0.96019 1.21630 1.34679 1.08908 0.90509 0.91026 1.25637 0.95374 0.95481 1.01724 1.70058 1.41357 1.20459 1.24244 0.85580 0.77754 0.78970 0.79732 1.18358 1.21214 1.21644 1.57587 1.61015 1.25538 1.39689 1.21439 1.00008 0.81551 1.01796 1.01194 0.73093 0.71923 0.73197 1.93523 1.87270 1.74458 1.43328 1.93531 1.84589 1.35122 1.87761 1.55825 1.33744 1.15024 1.82607 1.20834 0.96268 0.81952 0.95791 0.89777 1.22055 0.97317 1.00550 0.97363 1.21396 0.96588 0.99196 0.97817 1.22139 0.98471 1.02671 0.94753 1.21646 0.93451 0.99304 0.87925 0.91555 1.62163 1.23617 1.04777 1.37837 1.22402 0.94057 0.94696 1.01357 1.22492 0.99075 0.90215 1.01173 1.21796 0.96276 1.00154 0.96778 0.93242 0.96094 0.92266 0.92970 0.93045 0.90388 0.90505 0.75053 0.88904 0.91763 0.90572 0.92935 0.91474 0.90421 0.94301 0.90889 0.92225 0.91201 0.91249 0.94067 0.89016 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.33 8.95 71.98 0.64 -5.68 16 2 C 0.27 13.34 2.53 44.24 0.11 13.45 16 3 H 0.02 1.23 7.01 -2.39 -0.02 1.21 16 4 C -0.52 -25.84 8.07 25.60 0.21 -25.63 16 5 H 0.07 3.39 7.48 -2.91 -0.02 3.37 16 6 C 0.02 0.90 5.32 84.66 0.45 1.35 16 7 N -0.92 -51.74 11.71 21.45 0.25 -51.49 16 8 Si 0.95 41.83 29.54 68.60 2.03 43.85 16 9 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 10 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 12 N -1.00 -39.95 3.12 -520.45 -1.62 -41.57 16 13 C 0.10 3.20 8.93 127.77 1.14 4.34 16 14 S 2.80 108.01 5.98 -56.49 -0.34 107.67 16 15 O -1.00 -38.75 16.40 -128.00 -2.10 -40.85 16 16 O -1.03 -48.15 16.85 -128.00 -2.16 -50.30 16 17 N -1.11 -34.59 4.80 -169.39 -0.81 -35.40 16 18 C 0.16 4.07 3.04 44.99 0.14 4.20 16 19 H 0.08 2.16 6.73 -2.39 -0.02 2.14 16 20 C -0.13 -2.82 5.64 30.59 0.17 -2.64 16 21 C -0.11 -2.14 5.76 30.59 0.18 -1.96 16 22 C -0.14 -2.51 4.51 30.59 0.14 -2.37 16 23 C 0.09 1.94 2.04 44.92 0.09 2.03 16 24 H 0.07 1.72 6.50 -2.38 -0.02 1.71 16 25 N -0.56 -12.66 5.01 -923.25 -4.62 -17.28 16 26 C 0.02 0.43 9.31 127.69 1.19 1.62 16 27 C 0.02 0.33 8.82 127.69 1.13 1.45 16 28 C -0.11 -2.72 4.71 30.60 0.14 -2.58 16 29 H 0.05 2.12 7.57 -2.38 -0.02 2.10 16 30 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 3.09 6.49 -2.39 -0.02 3.07 16 32 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.08 2.56 7.28 -2.39 -0.02 2.54 16 35 H 0.08 2.11 6.62 -2.39 -0.02 2.10 16 36 H 0.41 12.39 6.79 -96.74 -0.66 11.73 16 37 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.06 1.55 7.72 -2.39 -0.02 1.54 16 39 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.05 1.14 7.42 -2.39 -0.02 1.12 16 41 H 0.07 1.13 6.52 -2.39 -0.02 1.11 16 42 H 0.08 1.21 6.38 -2.38 -0.02 1.20 16 43 H 0.04 0.63 6.44 -2.39 -0.02 0.61 16 44 H 0.07 1.25 8.12 -2.39 -0.02 1.23 16 45 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.07 1.27 6.32 -2.39 -0.02 1.25 16 47 H 0.07 1.15 8.12 -2.39 -0.02 1.13 16 48 H 0.04 0.62 6.28 -2.38 -0.01 0.60 16 49 H 0.09 1.85 6.42 -2.39 -0.02 1.84 16 50 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -65.37 381.74 -3.37 -68.75 By element: Atomic # 1 Polarization: 28.78 SS G_CDS: 0.27 Total: 29.05 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 5.73 Total: -12.42 kcal Atomic # 7 Polarization: -138.94 SS G_CDS: -6.81 Total: -145.75 kcal Atomic # 8 Polarization: -86.90 SS G_CDS: -4.26 Total: -91.15 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Atomic # 16 Polarization: 108.01 SS G_CDS: -0.34 Total: 107.67 kcal Total: -65.37 -3.37 -68.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407973875.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.021 kcal (2) G-P(sol) polarization free energy of solvation -65.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds