Wall clock time and date at job start Tue Mar 31 2020 17:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46672 * 2 1 4 4 C 1.50697 * 109.47396 * 239.99427 * 2 1 3 5 5 H 1.08001 * 120.00093 * 245.17488 * 4 2 1 6 6 C 1.37881 * 119.99838 * 65.18045 * 4 2 1 7 7 N 1.31508 * 120.00029 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99783 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47389 * 89.99816 * 8 6 4 10 10 H 1.48504 * 109.47064 * 209.99893 * 8 6 4 11 11 H 1.48504 * 109.47082 * 329.99238 * 8 6 4 12 12 N 1.46500 * 109.46971 * 119.99350 * 2 1 3 13 13 C 1.46504 * 120.00078 * 55.41580 * 12 2 1 14 14 S 1.65607 * 120.00195 * 235.41908 * 12 2 1 15 15 O 1.42098 * 106.40309 * 162.42834 * 14 12 2 16 16 O 1.42102 * 106.40068 * 29.50811 * 14 12 2 17 17 N 1.65599 * 107.21354 * 275.97053 * 14 12 2 18 18 C 1.46496 * 120.00291 * 296.65185 * 17 14 12 19 19 H 1.08997 * 109.47227 * 24.22454 * 18 17 14 20 20 C 1.52997 * 109.47206 * 264.22983 * 18 17 14 21 21 C 1.53004 * 109.47423 * 179.97438 * 20 18 17 22 22 C 1.52999 * 109.46832 * 59.99447 * 21 20 18 23 23 C 1.52997 * 109.47569 * 300.00464 * 22 21 20 24 24 H 1.09002 * 109.47051 * 299.99739 * 23 22 21 25 25 N 1.46899 * 109.47463 * 179.97438 * 23 22 21 26 26 C 1.46910 * 110.99717 * 59.99634 * 25 23 22 27 27 C 1.46899 * 111.00364 * 183.95458 * 25 23 22 28 28 C 1.52994 * 109.47067 * 59.99887 * 23 22 21 29 29 H 1.09001 * 109.47147 * 60.00320 * 1 2 3 30 30 H 1.09001 * 109.47352 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47506 * 300.00450 * 1 2 3 32 32 H 0.97000 * 120.00046 * 180.02562 * 7 6 4 33 33 H 1.08994 * 109.47196 * 270.00090 * 13 12 2 34 34 H 1.09000 * 109.46944 * 30.00260 * 13 12 2 35 35 H 1.08997 * 109.47064 * 149.99660 * 13 12 2 36 36 H 0.97005 * 119.99999 * 116.66097 * 17 14 12 37 37 H 1.08998 * 109.47276 * 299.99542 * 20 18 17 38 38 H 1.09000 * 109.47731 * 59.99791 * 20 18 17 39 39 H 1.08992 * 109.47631 * 179.97438 * 21 20 18 40 40 H 1.08998 * 109.46644 * 300.00080 * 21 20 18 41 41 H 1.09001 * 109.47296 * 179.97438 * 22 21 20 42 42 H 1.09007 * 109.47277 * 60.00852 * 22 21 20 43 43 H 1.09006 * 109.46603 * 179.97438 * 26 25 23 44 44 H 1.08989 * 109.47165 * 299.99955 * 26 25 23 45 45 H 1.09002 * 109.46692 * 60.00451 * 26 25 23 46 46 H 1.09007 * 109.46520 * 296.04655 * 27 25 23 47 47 H 1.08995 * 109.46832 * 56.04197 * 27 25 23 48 48 H 1.08999 * 109.46987 * 176.04793 * 27 25 23 49 49 H 1.09002 * 109.47306 * 60.00008 * 28 23 22 50 50 H 1.09002 * 109.47124 * 180.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.5826 -1.6347 -1.1334 6 6 1.7896 -0.1805 -2.4799 7 7 1.1192 0.9447 -2.5980 8 14 2.4117 -1.0616 -4.0050 9 1 1.3783 -2.0154 -4.4818 10 1 2.6961 -0.0666 -5.0701 11 1 3.6555 -1.8031 -3.6755 12 7 2.0183 -0.6905 1.1963 13 6 1.5834 -2.0604 1.4801 14 16 3.0617 0.0775 2.2277 15 8 3.0225 -0.6458 3.4502 16 8 2.7683 1.4649 2.1358 17 7 4.5882 -0.1191 1.6167 18 6 5.1660 -1.4608 1.5066 19 1 4.3649 -2.1978 1.4496 20 6 6.0337 -1.7449 2.7343 21 6 6.6366 -3.1464 2.6196 22 6 7.4965 -3.2299 1.3568 23 6 6.6288 -2.9458 0.1291 24 1 5.8274 -3.6826 0.0723 25 7 7.4545 -3.0254 -1.0832 26 6 8.0516 -4.3600 -1.2269 27 6 6.6752 -2.6661 -2.2755 28 6 6.0259 -1.5444 0.2439 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 0.9481 1.3173 -3.4771 33 1 0.6780 -2.0359 2.0863 34 1 1.3795 -2.5784 0.5430 35 1 2.3695 -2.5861 2.0221 36 1 5.1000 0.6541 1.3318 37 1 6.8348 -1.0080 2.7913 38 1 5.4210 -1.6858 3.6338 39 1 7.2551 -3.3486 3.4939 40 1 5.8352 -3.8830 2.5627 41 1 7.9264 -4.2282 1.2753 42 1 8.2979 -2.4932 1.4136 43 1 8.6573 -4.3913 -2.1326 44 1 8.6796 -4.5720 -0.3617 45 1 7.2603 -5.1067 -1.2933 46 1 5.8758 -3.3930 -2.4196 47 1 6.2444 -1.6738 -2.1425 48 1 7.3273 -2.6651 -3.1490 49 1 6.8273 -0.8077 0.3007 50 1 5.4074 -1.3422 -0.6306 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407973877.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:59 Heat of formation + Delta-G solvation = -82.607461 kcal Electronic energy + Delta-G solvation = -29831.329117 eV Core-core repulsion = 26019.881779 eV Total energy + Delta-G solvation = -3811.447338 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.46713 -36.72842 -36.30820 -36.10005 -35.21581 -33.49716 -32.61256 -30.03256 -29.15063 -28.84695 -27.17468 -25.59701 -25.14449 -24.11487 -22.13276 -20.96584 -20.79769 -19.94497 -18.65817 -17.17004 -16.87137 -16.51438 -16.28443 -15.43627 -15.06388 -14.87836 -14.71651 -14.34538 -14.24812 -14.01474 -13.46463 -13.39655 -13.26331 -12.88950 -12.69177 -12.51628 -12.14881 -12.07096 -11.92970 -11.81587 -11.56010 -11.47967 -11.38951 -11.36763 -11.25681 -11.21856 -11.10950 -11.01744 -10.87270 -10.59168 -10.46724 -10.36414 -10.30127 -10.15138 -10.07755 -9.37092 -9.06992 -8.52743 -8.36027 -7.98500 -6.13443 -4.20984 1.29877 3.19713 3.27043 3.28456 3.48928 3.88499 4.16858 4.31309 4.71321 4.76840 4.93467 5.02760 5.12544 5.16938 5.18307 5.25483 5.33603 5.40535 5.45348 5.46862 5.57823 5.60838 5.63156 5.67670 5.80275 5.83656 5.92983 6.01134 6.09276 6.12221 6.16642 6.22496 6.27008 6.30982 6.45668 6.56403 6.60636 6.81532 6.83018 7.02006 7.06289 7.08499 7.29544 7.51299 7.58927 7.75117 7.97111 8.21503 8.82145 9.44981 10.92808 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009352 B = 0.006392 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2993.327440 B = 4379.454756 C = 6692.386448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.268 3.732 3 H 0.060 0.940 4 C -0.524 4.524 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.891 3.109 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.272 1.272 12 N -0.991 5.991 13 C 0.105 3.895 14 S 2.783 3.217 15 O -0.999 6.999 16 O -0.985 6.985 17 N -1.121 6.121 18 C 0.167 3.833 19 H 0.080 0.920 20 C -0.139 4.139 21 C -0.115 4.115 22 C -0.113 4.113 23 C 0.087 3.913 24 H 0.043 0.957 25 N -0.542 5.542 26 C 0.022 3.978 27 C 0.017 3.983 28 C -0.122 4.122 29 H 0.083 0.917 30 H 0.033 0.967 31 H 0.014 0.986 32 H 0.264 0.736 33 H 0.043 0.957 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.412 0.588 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.023 0.977 46 H 0.027 0.973 47 H 0.080 0.920 48 H 0.064 0.936 49 H 0.075 0.925 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.314 -9.145 5.157 15.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.166 3.834 3 H 0.078 0.922 4 C -0.563 4.563 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.719 3.281 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.197 1.197 12 N -0.834 5.834 13 C -0.042 4.042 14 S 2.792 3.208 15 O -0.982 6.982 16 O -0.969 6.969 17 N -0.878 5.878 18 C 0.059 3.941 19 H 0.098 0.902 20 C -0.178 4.178 21 C -0.154 4.154 22 C -0.151 4.151 23 C -0.022 4.022 24 H 0.061 0.939 25 N -0.266 5.266 26 C -0.126 4.126 27 C -0.131 4.131 28 C -0.161 4.161 29 H 0.102 0.898 30 H 0.052 0.948 31 H 0.033 0.967 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.245 0.755 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.042 0.958 46 H 0.045 0.955 47 H 0.098 0.902 48 H 0.083 0.917 49 H 0.094 0.906 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.272 -8.349 5.925 15.227 hybrid contribution -0.105 -0.963 -1.692 1.950 sum 11.167 -9.312 4.233 15.144 Atomic orbital electron populations 1.21991 0.98094 0.99515 1.00367 1.18705 0.91783 0.92808 0.80154 0.92223 1.21347 1.35742 1.08916 0.90311 0.92051 1.24917 0.95076 0.94861 0.98883 1.69905 1.39620 1.18872 1.23986 0.86617 0.79222 0.79399 0.82847 1.20792 1.21207 1.19732 1.57715 1.60354 1.24359 1.40948 1.21214 0.98653 0.83048 1.01241 1.01782 0.72639 0.73080 0.73325 1.93535 1.86883 1.74598 1.43188 1.93591 1.83521 1.32518 1.87237 1.56046 1.35260 1.13539 1.82926 1.20519 0.95917 0.83223 0.94475 0.90223 1.22128 0.99886 0.96908 0.98915 1.21479 0.99269 0.97175 0.97465 1.21659 0.98379 1.01693 0.93350 1.21626 0.93848 0.97015 0.89734 0.93911 1.62035 1.34662 1.27157 1.02731 1.22420 0.98914 0.89034 1.02271 1.22503 0.96505 1.01954 0.92148 1.21968 0.99469 0.96371 0.98284 0.89832 0.94779 0.96652 0.92629 0.93877 0.90462 0.93056 0.75521 0.91425 0.90538 0.91515 0.91873 0.92039 0.91024 0.91679 0.91187 0.95818 0.95469 0.90166 0.91695 0.90648 0.89745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.95 37.16 0.33 -2.92 16 2 C 0.27 6.38 2.53 -69.09 -0.17 6.21 16 3 H 0.06 1.60 7.01 -51.93 -0.36 1.23 16 4 C -0.52 -12.89 8.07 -34.44 -0.28 -13.17 16 5 H 0.06 1.46 7.47 -52.49 -0.39 1.07 16 6 C 0.07 1.68 5.32 -17.82 -0.09 1.58 16 7 N -0.89 -23.98 11.71 55.43 0.65 -23.33 16 8 Si 0.89 19.78 29.54 -169.99 -5.02 14.75 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 12 N -0.99 -20.04 3.12 -115.86 -0.36 -20.40 16 13 C 0.11 1.82 8.93 59.85 0.53 2.35 16 14 S 2.78 54.04 5.98 -107.50 -0.64 53.40 16 15 O -1.00 -19.98 16.39 -57.17 -0.94 -20.92 16 16 O -0.98 -22.49 16.85 -57.17 -0.96 -23.45 16 17 N -1.12 -17.79 5.52 -4.90 -0.03 -17.82 16 18 C 0.17 2.34 2.71 -67.93 -0.18 2.16 16 19 H 0.08 1.16 6.74 -51.93 -0.35 0.81 16 20 C -0.14 -1.70 5.53 -26.73 -0.15 -1.85 16 21 C -0.12 -1.18 5.92 -26.73 -0.16 -1.34 16 22 C -0.11 -1.15 4.97 -26.73 -0.13 -1.28 16 23 C 0.09 1.05 1.95 -67.72 -0.13 0.92 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 25 N -0.54 -6.59 4.89 -243.18 -1.19 -7.77 16 26 C 0.02 0.22 9.21 60.07 0.55 0.77 16 27 C 0.02 0.22 9.23 60.06 0.55 0.78 16 28 C -0.12 -1.64 4.38 -26.74 -0.12 -1.76 16 29 H 0.08 2.11 6.49 -51.93 -0.34 1.77 16 30 H 0.03 0.73 7.57 -51.93 -0.39 0.34 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.34 7.27 -51.93 -0.38 0.96 16 35 H 0.05 0.78 6.62 -51.93 -0.34 0.43 16 36 H 0.41 5.94 8.85 -34.47 -0.30 5.63 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 1.04 7.72 -51.93 -0.40 0.64 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.56 6.41 -51.93 -0.33 0.23 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.62 6.30 -51.94 -0.33 0.29 16 45 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 46 H 0.03 0.37 8.14 -51.92 -0.42 -0.05 16 47 H 0.08 1.15 6.01 -51.93 -0.31 0.84 16 48 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 50 H 0.08 1.32 6.26 -51.93 -0.33 0.99 16 LS Contribution 389.75 15.07 5.87 5.87 Total: -1.00 -29.75 389.75 -10.83 -40.58 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -8.77 Total: 6.62 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 0.56 Total: -7.55 kcal Atomic # 7 Polarization: -68.39 SS G_CDS: -0.93 Total: -69.32 kcal Atomic # 8 Polarization: -42.47 SS G_CDS: -1.90 Total: -44.37 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.75 kcal Atomic # 16 Polarization: 54.04 SS G_CDS: -0.64 Total: 53.40 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.75 -10.83 -40.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407973877.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.025 kcal (2) G-P(sol) polarization free energy of solvation -29.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds