Wall clock time and date at job start Tue Mar 31 2020 17:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46672 * 2 1 4 4 C 1.50697 * 109.47396 * 239.99427 * 2 1 3 5 5 H 1.08001 * 120.00093 * 245.17488 * 4 2 1 6 6 C 1.37881 * 119.99838 * 65.18045 * 4 2 1 7 7 N 1.31508 * 120.00029 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99783 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47389 * 89.99816 * 8 6 4 10 10 H 1.48504 * 109.47064 * 209.99893 * 8 6 4 11 11 H 1.48504 * 109.47082 * 329.99238 * 8 6 4 12 12 N 1.46500 * 109.46971 * 119.99350 * 2 1 3 13 13 C 1.46504 * 120.00078 * 55.41580 * 12 2 1 14 14 S 1.65607 * 120.00195 * 235.41908 * 12 2 1 15 15 O 1.42098 * 106.40309 * 162.42834 * 14 12 2 16 16 O 1.42102 * 106.40068 * 29.50811 * 14 12 2 17 17 N 1.65599 * 107.21354 * 275.97053 * 14 12 2 18 18 C 1.46496 * 120.00291 * 296.65185 * 17 14 12 19 19 H 1.08997 * 109.47227 * 24.22454 * 18 17 14 20 20 C 1.52997 * 109.47206 * 264.22983 * 18 17 14 21 21 C 1.53004 * 109.47423 * 179.97438 * 20 18 17 22 22 C 1.52999 * 109.46832 * 59.99447 * 21 20 18 23 23 C 1.52997 * 109.47569 * 300.00464 * 22 21 20 24 24 H 1.09002 * 109.47051 * 299.99739 * 23 22 21 25 25 N 1.46899 * 109.47463 * 179.97438 * 23 22 21 26 26 C 1.46910 * 110.99717 * 59.99634 * 25 23 22 27 27 C 1.46899 * 111.00364 * 183.95458 * 25 23 22 28 28 C 1.52994 * 109.47067 * 59.99887 * 23 22 21 29 29 H 1.09001 * 109.47147 * 60.00320 * 1 2 3 30 30 H 1.09001 * 109.47352 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47506 * 300.00450 * 1 2 3 32 32 H 0.97000 * 120.00046 * 180.02562 * 7 6 4 33 33 H 1.08994 * 109.47196 * 270.00090 * 13 12 2 34 34 H 1.09000 * 109.46944 * 30.00260 * 13 12 2 35 35 H 1.08997 * 109.47064 * 149.99660 * 13 12 2 36 36 H 0.97005 * 119.99999 * 116.66097 * 17 14 12 37 37 H 1.08998 * 109.47276 * 299.99542 * 20 18 17 38 38 H 1.09000 * 109.47731 * 59.99791 * 20 18 17 39 39 H 1.08992 * 109.47631 * 179.97438 * 21 20 18 40 40 H 1.08998 * 109.46644 * 300.00080 * 21 20 18 41 41 H 1.09001 * 109.47296 * 179.97438 * 22 21 20 42 42 H 1.09007 * 109.47277 * 60.00852 * 22 21 20 43 43 H 1.09006 * 109.46603 * 179.97438 * 26 25 23 44 44 H 1.08989 * 109.47165 * 299.99955 * 26 25 23 45 45 H 1.09002 * 109.46692 * 60.00451 * 26 25 23 46 46 H 1.09007 * 109.46520 * 296.04655 * 27 25 23 47 47 H 1.08995 * 109.46832 * 56.04197 * 27 25 23 48 48 H 1.08999 * 109.46987 * 176.04793 * 27 25 23 49 49 H 1.09002 * 109.47306 * 60.00008 * 28 23 22 50 50 H 1.09002 * 109.47124 * 180.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.5826 -1.6347 -1.1334 6 6 1.7896 -0.1805 -2.4799 7 7 1.1192 0.9447 -2.5980 8 14 2.4117 -1.0616 -4.0050 9 1 1.3783 -2.0154 -4.4818 10 1 2.6961 -0.0666 -5.0701 11 1 3.6555 -1.8031 -3.6755 12 7 2.0183 -0.6905 1.1963 13 6 1.5834 -2.0604 1.4801 14 16 3.0617 0.0775 2.2277 15 8 3.0225 -0.6458 3.4502 16 8 2.7683 1.4649 2.1358 17 7 4.5882 -0.1191 1.6167 18 6 5.1660 -1.4608 1.5066 19 1 4.3649 -2.1978 1.4496 20 6 6.0337 -1.7449 2.7343 21 6 6.6366 -3.1464 2.6196 22 6 7.4965 -3.2299 1.3568 23 6 6.6288 -2.9458 0.1291 24 1 5.8274 -3.6826 0.0723 25 7 7.4545 -3.0254 -1.0832 26 6 8.0516 -4.3600 -1.2269 27 6 6.6752 -2.6661 -2.2755 28 6 6.0259 -1.5444 0.2439 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 0.9481 1.3173 -3.4771 33 1 0.6780 -2.0359 2.0863 34 1 1.3795 -2.5784 0.5430 35 1 2.3695 -2.5861 2.0221 36 1 5.1000 0.6541 1.3318 37 1 6.8348 -1.0080 2.7913 38 1 5.4210 -1.6858 3.6338 39 1 7.2551 -3.3486 3.4939 40 1 5.8352 -3.8830 2.5627 41 1 7.9264 -4.2282 1.2753 42 1 8.2979 -2.4932 1.4136 43 1 8.6573 -4.3913 -2.1326 44 1 8.6796 -4.5720 -0.3617 45 1 7.2603 -5.1067 -1.2933 46 1 5.8758 -3.3930 -2.4196 47 1 6.2444 -1.6738 -2.1425 48 1 7.3273 -2.6651 -3.1490 49 1 6.8273 -0.8077 0.3007 50 1 5.4074 -1.3422 -0.6306 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407973877.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:58 Heat of formation + Delta-G solvation = -104.082099 kcal Electronic energy + Delta-G solvation = -29832.260327 eV Core-core repulsion = 26019.881779 eV Total energy + Delta-G solvation = -3812.378548 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.45314 -38.31670 -37.90404 -37.33997 -36.88032 -34.57668 -34.49361 -31.02447 -30.96139 -29.87750 -28.12175 -27.29714 -26.95821 -25.04595 -23.13196 -22.61397 -21.93745 -21.02767 -20.09512 -18.74580 -18.37858 -18.26650 -17.62892 -17.02400 -16.36982 -16.00262 -15.81359 -15.62995 -15.28835 -15.09773 -15.02491 -14.91063 -14.45323 -14.35434 -13.81454 -13.77683 -13.52207 -13.44203 -13.21119 -13.17816 -13.15171 -13.05665 -12.96984 -12.77614 -12.66081 -12.49730 -12.33254 -12.26241 -12.20626 -12.19173 -12.08120 -11.89670 -11.48475 -11.41103 -11.16485 -11.14950 -10.50891 -10.33052 -9.66988 -9.29907 -8.09589 -6.22797 -0.26129 1.42928 1.45201 1.53432 1.99440 2.44873 2.63807 2.95401 3.20649 3.47130 3.74652 3.82238 3.88781 4.09367 4.20199 4.25800 4.30201 4.37408 4.46228 4.50940 4.52938 4.67299 4.69113 4.69475 4.75194 4.76864 4.77462 4.95213 4.98112 4.99426 5.05095 5.06344 5.12574 5.17492 5.23643 5.23969 5.32320 5.33536 5.41257 5.55469 5.59451 5.65974 5.84968 6.04013 6.07880 6.15372 6.20449 6.28115 6.86520 7.46550 8.96321 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009352 B = 0.006392 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2993.327440 B = 4379.454756 C = 6692.386448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.274 3.726 3 H 0.024 0.976 4 C -0.521 4.521 5 H 0.068 0.932 6 C 0.019 3.981 7 N -0.920 5.920 8 Si 0.949 3.051 9 H -0.280 1.280 10 H -0.291 1.291 11 H -0.258 1.258 12 N -0.997 5.997 13 C 0.098 3.902 14 S 2.797 3.203 15 O -1.002 7.002 16 O -1.023 7.023 17 N -1.114 6.114 18 C 0.161 3.839 19 H 0.074 0.926 20 C -0.136 4.136 21 C -0.111 4.111 22 C -0.105 4.105 23 C 0.087 3.913 24 H 0.035 0.965 25 N -0.547 5.547 26 C 0.021 3.979 27 C 0.018 3.982 28 C -0.115 4.115 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.021 0.979 32 H 0.262 0.738 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.419 0.581 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.022 0.978 46 H 0.017 0.983 47 H 0.062 0.938 48 H 0.077 0.923 49 H 0.079 0.921 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.250 -11.446 5.580 18.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.169 3.831 3 H 0.042 0.958 4 C -0.560 4.560 5 H 0.087 0.913 6 C -0.181 4.181 7 N -0.559 5.559 8 Si 0.775 3.225 9 H -0.206 1.206 10 H -0.218 1.218 11 H -0.181 1.181 12 N -0.839 5.839 13 C -0.047 4.047 14 S 2.806 3.194 15 O -0.986 6.986 16 O -1.007 7.007 17 N -0.874 5.874 18 C 0.054 3.946 19 H 0.092 0.908 20 C -0.175 4.175 21 C -0.150 4.150 22 C -0.143 4.143 23 C -0.022 4.022 24 H 0.053 0.947 25 N -0.271 5.271 26 C -0.127 4.127 27 C -0.130 4.130 28 C -0.154 4.154 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.253 0.747 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.105 0.895 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.104 0.896 45 H 0.041 0.959 46 H 0.035 0.965 47 H 0.080 0.920 48 H 0.096 0.904 49 H 0.098 0.902 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.215 -10.678 6.368 18.144 hybrid contribution -0.679 -0.256 -1.779 1.921 sum 12.536 -10.934 4.589 17.256 Atomic orbital electron populations 1.21881 0.97871 1.00101 0.99508 1.18380 0.91953 0.91352 0.81366 0.95815 1.21562 1.35014 1.08838 0.90585 0.91340 1.25635 0.95374 0.95440 1.01664 1.70042 1.41096 1.20394 1.24381 0.85699 0.79232 0.78255 0.79355 1.20614 1.21757 1.18145 1.57601 1.61078 1.25419 1.39756 1.21423 0.99991 0.81589 1.01734 1.01202 0.73043 0.71966 0.73193 1.93525 1.87231 1.74421 1.43385 1.93536 1.84465 1.34958 1.87729 1.55792 1.33976 1.14905 1.82691 1.20747 0.96156 0.81770 0.95941 0.90762 1.22097 0.99625 0.98765 0.97020 1.21481 0.99553 0.95557 0.98362 1.21612 0.97895 1.02757 0.92021 1.21632 0.94142 0.95530 0.90851 0.94723 1.62064 1.34189 1.28677 1.02190 1.22501 0.99000 0.87656 1.03527 1.22460 0.96634 1.00643 0.93286 1.21872 0.99049 0.97772 0.96718 0.92179 0.93353 0.96018 0.92871 0.92846 0.90501 0.90803 0.74686 0.90493 0.91777 0.89463 0.91729 0.90270 0.90797 0.90806 0.89600 0.95907 0.96482 0.91964 0.90434 0.90198 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.30 8.95 71.98 0.64 -5.65 16 2 C 0.27 13.23 2.53 44.24 0.11 13.34 16 3 H 0.02 1.33 7.01 -2.39 -0.02 1.31 16 4 C -0.52 -25.72 8.07 25.60 0.21 -25.52 16 5 H 0.07 3.23 7.47 -2.91 -0.02 3.20 16 6 C 0.02 0.96 5.32 84.66 0.45 1.41 16 7 N -0.92 -50.93 11.71 21.45 0.25 -50.68 16 8 Si 0.95 40.59 29.54 68.60 2.03 42.61 16 9 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 10 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 12 N -1.00 -40.14 3.12 -520.46 -1.62 -41.76 16 13 C 0.10 3.27 8.93 127.77 1.14 4.41 16 14 S 2.80 108.63 5.98 -56.49 -0.34 108.29 16 15 O -1.00 -39.19 16.39 -128.00 -2.10 -41.29 16 16 O -1.02 -47.78 16.85 -128.00 -2.16 -49.94 16 17 N -1.11 -35.03 5.52 -169.40 -0.94 -35.96 16 18 C 0.16 4.34 2.71 44.99 0.12 4.46 16 19 H 0.07 2.08 6.74 -2.39 -0.02 2.06 16 20 C -0.14 -3.04 5.53 30.59 0.17 -2.87 16 21 C -0.11 -1.92 5.92 30.60 0.18 -1.74 16 22 C -0.11 -1.80 4.97 30.59 0.15 -1.65 16 23 C 0.09 1.94 1.95 44.91 0.09 2.03 16 24 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 25 N -0.55 -12.16 4.89 -923.27 -4.51 -16.67 16 26 C 0.02 0.36 9.21 127.69 1.18 1.53 16 27 C 0.02 0.45 9.23 127.69 1.18 1.63 16 28 C -0.11 -2.97 4.38 30.59 0.13 -2.84 16 29 H 0.06 3.11 6.49 -2.39 -0.02 3.09 16 30 H 0.05 2.07 7.57 -2.39 -0.02 2.05 16 31 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 33 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.08 2.56 7.27 -2.39 -0.02 2.54 16 35 H 0.07 2.11 6.62 -2.39 -0.02 2.09 16 36 H 0.42 12.08 8.85 -96.74 -0.86 11.23 16 37 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.06 1.62 7.72 -2.39 -0.02 1.60 16 39 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.08 1.12 6.41 -2.39 -0.02 1.10 16 42 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 43 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 44 H 0.09 1.19 6.30 -2.39 -0.02 1.18 16 45 H 0.02 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.02 0.44 8.14 -2.38 -0.02 0.42 16 47 H 0.06 1.77 6.01 -2.39 -0.01 1.75 16 48 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 49 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 50 H 0.06 1.83 6.26 -2.39 -0.01 1.81 16 Total: -1.00 -63.76 389.75 -3.57 -67.32 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: 0.06 Total: 29.52 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: 5.76 Total: -11.45 kcal Atomic # 7 Polarization: -138.25 SS G_CDS: -6.82 Total: -145.07 kcal Atomic # 8 Polarization: -86.97 SS G_CDS: -4.26 Total: -91.23 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.61 kcal Atomic # 16 Polarization: 108.63 SS G_CDS: -0.34 Total: 108.29 kcal Total: -63.76 -3.57 -67.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407973877.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.757 kcal (2) G-P(sol) polarization free energy of solvation -63.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds