Wall clock time and date at job start Tue Mar 31 2020 17:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47245 * 2 1 4 4 C 1.50700 * 109.47253 * 120.00602 * 2 1 3 5 5 H 1.08002 * 120.00661 * 120.73983 * 4 2 1 6 6 C 1.37887 * 119.99544 * 300.73680 * 4 2 1 7 7 N 1.31514 * 119.99685 * 157.00089 * 6 4 2 8 8 Si 1.86794 * 120.00248 * 336.72890 * 6 4 2 9 9 H 1.48499 * 109.47096 * 270.27980 * 8 6 4 10 10 H 1.48510 * 109.46921 * 30.27190 * 8 6 4 11 11 H 1.48493 * 109.47532 * 150.27362 * 8 6 4 12 12 N 1.46505 * 109.46776 * 239.99862 * 2 1 3 13 13 C 1.46501 * 120.00317 * 300.00314 * 12 2 1 14 14 S 1.65602 * 119.99602 * 120.00294 * 12 2 1 15 15 O 1.42104 * 106.39810 * 203.54312 * 14 12 2 16 16 O 1.42098 * 106.40362 * 336.45723 * 14 12 2 17 17 N 1.65595 * 107.21857 * 90.00126 * 14 12 2 18 18 C 1.46500 * 120.00091 * 62.53191 * 17 14 12 19 19 C 1.46501 * 119.99768 * 242.52498 * 17 14 12 20 20 H 1.09006 * 109.51944 * 47.27867 * 19 17 14 21 21 C 1.53122 * 109.52210 * 167.40047 * 19 17 14 22 22 C 1.53041 * 109.27603 * 62.25507 * 21 19 17 23 23 N 1.46840 * 109.52230 * 59.17852 * 22 21 19 24 24 C 1.46905 * 110.99894 * 174.15829 * 23 22 21 25 25 C 1.46840 * 111.20076 * 298.25754 * 23 22 21 26 26 C 1.53036 * 109.52357 * 61.74229 * 25 23 22 27 27 H 1.09002 * 109.50454 * 60.76669 * 26 25 23 28 28 C 1.53003 * 109.50523 * 180.87875 * 26 25 23 29 29 H 1.08996 * 109.47483 * 174.74471 * 1 2 3 30 30 H 1.09001 * 109.47184 * 294.74090 * 1 2 3 31 31 H 1.08996 * 109.47160 * 54.74062 * 1 2 3 32 32 H 0.96999 * 119.99877 * 354.70191 * 7 6 4 33 33 H 1.08997 * 109.46918 * 90.00037 * 13 12 2 34 34 H 1.08995 * 109.46858 * 209.99967 * 13 12 2 35 35 H 1.09007 * 109.46890 * 329.99803 * 13 12 2 36 36 H 1.08998 * 109.47296 * 93.10760 * 18 17 14 37 37 H 1.09005 * 109.47042 * 213.10407 * 18 17 14 38 38 H 1.08996 * 109.46955 * 333.09877 * 18 17 14 39 39 H 1.08996 * 109.50733 * 182.19347 * 21 19 17 40 40 H 1.08997 * 109.50282 * 302.31534 * 21 19 17 41 41 H 1.08993 * 109.46053 * 179.19832 * 22 21 19 42 42 H 1.09004 * 109.46212 * 299.17196 * 22 21 19 43 43 H 1.09008 * 109.46594 * 63.95494 * 24 23 22 44 44 H 1.08994 * 109.47004 * 183.95487 * 24 23 22 45 45 H 1.08993 * 109.47073 * 303.95862 * 24 23 22 46 46 H 1.08997 * 109.46733 * 181.76301 * 25 23 22 47 47 H 1.09007 * 109.46522 * 301.72788 * 25 23 22 48 48 H 1.09002 * 109.47391 * 186.05862 * 28 26 25 49 49 H 1.08996 * 109.47539 * 306.06648 * 28 26 25 50 50 H 1.09004 * 109.46762 * 66.06518 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6631 -1.5816 1.1313 6 6 1.6867 -0.2484 2.4827 7 7 1.7165 -1.0624 3.5152 8 14 1.1835 1.5355 2.7139 9 1 2.3862 2.3548 3.0096 10 1 0.5389 2.0330 1.4719 11 1 0.2253 1.6371 3.8438 12 7 2.0182 -0.6907 -1.1962 13 6 1.6643 -2.0932 -1.4281 14 16 2.9703 0.1141 -2.2863 15 8 2.8225 -0.5646 -3.5260 16 8 2.6903 1.4972 -2.1193 17 7 4.5436 -0.1043 -1.8181 18 6 5.1192 -1.4512 -1.7900 19 6 5.3599 1.0493 -1.4321 20 1 4.7981 1.6783 -0.7416 21 6 6.6436 0.5637 -0.7531 22 6 7.4565 -0.2697 -1.7465 23 7 7.7824 0.5480 -2.9218 24 6 8.6788 -0.1748 -3.8339 25 6 6.5658 0.9866 -3.6174 26 6 5.7264 1.8574 -2.6800 27 1 6.3007 2.7368 -2.3884 28 6 4.4484 2.2961 -3.3979 29 1 -0.3634 -1.0233 -0.0941 30 1 -0.3633 0.4301 0.9333 31 1 -0.3633 0.5932 -0.8391 32 1 1.9067 -2.0046 3.3847 33 1 0.7374 -2.1443 -1.9994 34 1 2.4627 -2.5819 -1.9865 35 1 1.5294 -2.5969 -0.4709 36 1 5.6155 -1.6542 -2.7390 37 1 5.8443 -1.5197 -0.9790 38 1 4.3263 -2.1819 -1.6310 39 1 7.2324 1.4225 -0.4312 40 1 6.3884 -0.0482 0.1121 41 1 8.3778 -0.6051 -1.2705 42 1 6.8722 -1.1358 -2.0575 43 1 8.1674 -1.0548 -4.2242 44 1 8.9603 0.4782 -4.6599 45 1 9.5737 -0.4843 -3.2942 46 1 6.8403 1.5636 -4.5005 47 1 5.9858 0.1145 -3.9196 48 1 3.9035 3.0020 -2.7710 49 1 4.7080 2.7742 -4.3423 50 1 3.8231 1.4245 -3.5917 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407976159.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:33 Heat of formation + Delta-G solvation = -17.471546 kcal Electronic energy + Delta-G solvation = -30815.668292 eV Core-core repulsion = 27007.045459 eV Total energy + Delta-G solvation = -3808.622833 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.10973 -36.89071 -36.42082 -35.76759 -35.44212 -33.27578 -32.61089 -31.16172 -29.84715 -27.78155 -26.97928 -25.70680 -25.03044 -24.65979 -22.37273 -21.59976 -20.82414 -19.83359 -18.31928 -17.58613 -17.26979 -17.09986 -16.20515 -15.41648 -15.36095 -14.86200 -14.71531 -14.30485 -14.00586 -13.80122 -13.67555 -13.42111 -13.30647 -12.96221 -12.77278 -12.47166 -12.42320 -12.15647 -12.10684 -12.00204 -11.85868 -11.77506 -11.69440 -11.55674 -11.52961 -11.28361 -11.04524 -10.88525 -10.76066 -10.55822 -10.51227 -10.17244 -10.13461 -10.04042 -9.68066 -9.28627 -8.75431 -8.40938 -8.23520 -8.07299 -6.55137 -4.17111 1.10773 3.32862 3.37530 3.42997 3.55927 3.85553 3.96718 4.42674 4.63421 4.70904 4.83489 4.94424 5.00488 5.11767 5.18723 5.25446 5.34269 5.39364 5.40134 5.47881 5.49795 5.55934 5.61855 5.69086 5.71666 5.77327 5.82540 5.83557 6.00736 6.02864 6.04978 6.14870 6.18941 6.21604 6.34813 6.43629 6.45563 6.54143 6.56280 6.66520 6.82560 6.98260 7.02967 7.03129 7.33502 7.47243 7.95580 8.28054 8.81287 9.48160 10.79850 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015620 B = 0.005083 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.169765 B = 5507.699928 C = 5917.424245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.248 3.752 3 H 0.049 0.951 4 C -0.617 4.617 5 H 0.064 0.936 6 C 0.044 3.956 7 N -0.893 5.893 8 Si 1.025 2.975 9 H -0.283 1.283 10 H -0.269 1.269 11 H -0.284 1.284 12 N -0.989 5.989 13 C 0.104 3.896 14 S 2.787 3.213 15 O -0.998 6.998 16 O -0.979 6.979 17 N -1.001 6.001 18 C 0.089 3.911 19 C 0.161 3.839 20 H 0.092 0.908 21 C -0.116 4.116 22 C 0.016 3.984 23 N -0.542 5.542 24 C 0.026 3.974 25 C 0.060 3.940 26 C -0.107 4.107 27 H 0.094 0.906 28 C -0.137 4.137 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.027 0.973 32 H 0.270 0.730 33 H 0.043 0.957 34 H 0.050 0.950 35 H 0.082 0.918 36 H 0.051 0.949 37 H 0.084 0.916 38 H 0.062 0.938 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.023 0.977 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.071 0.929 47 H 0.039 0.961 48 H 0.094 0.906 49 H 0.051 0.949 50 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.169 1.120 -11.479 15.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.144 3.856 3 H 0.066 0.934 4 C -0.655 4.655 5 H 0.082 0.918 6 C -0.164 4.164 7 N -0.526 5.526 8 Si 0.853 3.147 9 H -0.210 1.210 10 H -0.194 1.194 11 H -0.210 1.210 12 N -0.829 5.829 13 C -0.043 4.043 14 S 2.798 3.202 15 O -0.982 6.982 16 O -0.963 6.963 17 N -0.840 5.840 18 C -0.056 4.056 19 C 0.055 3.945 20 H 0.110 0.890 21 C -0.155 4.155 22 C -0.111 4.111 23 N -0.267 5.267 24 C -0.122 4.122 25 C -0.068 4.068 26 C -0.127 4.127 27 H 0.112 0.888 28 C -0.195 4.195 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.041 0.959 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.057 0.943 48 H 0.113 0.887 49 H 0.070 0.930 50 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 9.688 3.096 -10.914 14.918 hybrid contribution 0.187 -2.274 -1.050 2.512 sum 9.875 0.822 -11.964 15.535 Atomic orbital electron populations 1.22387 0.98555 1.00398 0.99676 1.18979 0.91137 0.92841 0.82654 0.93376 1.22116 1.36105 1.16662 0.90651 0.91772 1.25592 0.93772 1.04854 0.92163 1.70827 1.42710 1.05706 1.33335 0.84365 0.77610 0.76300 0.76452 1.20984 1.19380 1.20990 1.57533 1.64629 1.21391 1.39390 1.21270 0.98986 0.82013 1.02007 1.02002 0.72211 0.72963 0.72990 1.93555 1.86026 1.76559 1.42015 1.93668 1.84320 1.31309 1.87007 1.57925 1.29965 1.11836 1.84291 1.21855 0.99961 0.82602 1.01185 1.20878 0.92180 0.86140 0.95338 0.89000 1.21760 0.94805 1.01088 0.97870 1.23073 0.99947 0.96404 0.91667 1.61909 1.15858 1.40881 1.08012 1.22319 0.96616 0.96785 0.96474 1.22133 0.89952 0.98467 0.96204 1.21712 0.96456 0.98795 0.95787 0.88820 1.22344 0.95570 1.00857 1.00761 0.93221 0.92434 0.95417 0.92010 0.93788 0.93187 0.89937 0.93091 0.89774 0.91938 0.89863 0.90063 0.91141 0.90963 0.95881 0.91617 0.91556 0.91061 0.94317 0.88715 0.92961 0.96387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 8.60 37.16 0.32 -2.97 16 2 C 0.25 5.72 2.18 -69.08 -0.15 5.57 16 3 H 0.05 1.16 5.72 -51.93 -0.30 0.86 16 4 C -0.62 -15.76 8.26 -34.44 -0.28 -16.05 16 5 H 0.06 1.73 7.61 -52.49 -0.40 1.33 16 6 C 0.04 1.17 5.19 -17.82 -0.09 1.08 16 7 N -0.89 -25.59 13.70 55.43 0.76 -24.83 16 8 Si 1.03 23.96 26.22 -169.99 -4.46 19.50 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.27 -5.90 5.75 56.52 0.33 -5.58 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 N -0.99 -20.13 3.12 -115.85 -0.36 -20.49 16 13 C 0.10 1.86 8.86 59.85 0.53 2.39 16 14 S 2.79 53.92 3.87 -107.50 -0.42 53.51 16 15 O -1.00 -20.59 16.47 -57.17 -0.94 -21.53 16 16 O -0.98 -20.29 11.43 -57.17 -0.65 -20.94 16 17 N -1.00 -16.19 2.64 -114.74 -0.30 -16.49 16 18 C 0.09 1.23 8.16 59.85 0.49 1.72 16 19 C 0.16 2.39 2.62 -67.81 -0.18 2.21 16 20 H 0.09 1.49 7.80 -51.93 -0.41 1.08 16 21 C -0.12 -1.45 5.11 -26.65 -0.14 -1.58 16 22 C 0.02 0.18 4.70 -3.84 -0.02 0.16 16 23 N -0.54 -6.28 4.91 -242.97 -1.19 -7.48 16 24 C 0.03 0.25 9.59 60.07 0.58 0.83 16 25 C 0.06 0.77 4.54 -3.84 -0.02 0.75 16 26 C -0.11 -1.46 2.71 -90.54 -0.25 -1.71 16 27 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 28 C -0.14 -2.10 7.40 37.16 0.27 -1.82 16 29 H 0.05 1.03 7.50 -51.93 -0.39 0.64 16 30 H 0.06 1.27 4.97 -51.93 -0.26 1.01 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.27 7.67 8.73 -40.82 -0.36 7.31 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.78 6.23 -51.93 -0.32 0.46 16 35 H 0.08 1.54 7.03 -51.93 -0.37 1.18 16 36 H 0.05 0.65 6.09 -51.93 -0.32 0.33 16 37 H 0.08 1.03 4.87 -51.93 -0.25 0.77 16 38 H 0.06 0.87 6.04 -51.93 -0.31 0.56 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.08 1.04 7.33 -51.93 -0.38 0.66 16 41 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 42 H 0.07 0.82 3.15 -52.28 -0.16 0.66 16 43 H 0.02 0.22 8.14 -51.92 -0.42 -0.20 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 46 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 47 H 0.04 0.55 6.68 -51.92 -0.35 0.20 16 48 H 0.09 1.53 6.89 -51.93 -0.36 1.18 16 49 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 50 H 0.02 0.31 3.65 -26.25 -0.10 0.22 16 LS Contribution 361.82 15.07 5.45 5.45 Total: -1.00 -30.21 361.82 -9.16 -39.37 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -8.12 Total: 3.35 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: 1.07 Total: -9.43 kcal Atomic # 7 Polarization: -68.19 SS G_CDS: -1.10 Total: -69.28 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -1.59 Total: -42.47 kcal Atomic # 14 Polarization: 23.96 SS G_CDS: -4.46 Total: 19.50 kcal Atomic # 16 Polarization: 53.92 SS G_CDS: -0.42 Total: 53.51 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.21 -9.16 -39.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407976159.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.903 kcal (2) G-P(sol) polarization free energy of solvation -30.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds