Wall clock time and date at job start Tue Mar 31 2020 17:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47245 * 2 1 4 4 C 1.50700 * 109.47253 * 120.00602 * 2 1 3 5 5 H 1.08002 * 120.00661 * 120.73983 * 4 2 1 6 6 C 1.37887 * 119.99544 * 300.73680 * 4 2 1 7 7 N 1.31514 * 119.99685 * 157.00089 * 6 4 2 8 8 Si 1.86794 * 120.00248 * 336.72890 * 6 4 2 9 9 H 1.48499 * 109.47096 * 270.27980 * 8 6 4 10 10 H 1.48510 * 109.46921 * 30.27190 * 8 6 4 11 11 H 1.48493 * 109.47532 * 150.27362 * 8 6 4 12 12 N 1.46505 * 109.46776 * 239.99862 * 2 1 3 13 13 C 1.46501 * 120.00317 * 300.00314 * 12 2 1 14 14 S 1.65602 * 119.99602 * 120.00294 * 12 2 1 15 15 O 1.42104 * 106.39810 * 203.54312 * 14 12 2 16 16 O 1.42098 * 106.40362 * 336.45723 * 14 12 2 17 17 N 1.65595 * 107.21857 * 90.00126 * 14 12 2 18 18 C 1.46500 * 120.00091 * 62.53191 * 17 14 12 19 19 C 1.46501 * 119.99768 * 242.52498 * 17 14 12 20 20 H 1.09006 * 109.51944 * 47.27867 * 19 17 14 21 21 C 1.53122 * 109.52210 * 167.40047 * 19 17 14 22 22 C 1.53041 * 109.27603 * 62.25507 * 21 19 17 23 23 N 1.46840 * 109.52230 * 59.17852 * 22 21 19 24 24 C 1.46905 * 110.99894 * 174.15829 * 23 22 21 25 25 C 1.46840 * 111.20076 * 298.25754 * 23 22 21 26 26 C 1.53036 * 109.52357 * 61.74229 * 25 23 22 27 27 H 1.09002 * 109.50454 * 60.76669 * 26 25 23 28 28 C 1.53003 * 109.50523 * 180.87875 * 26 25 23 29 29 H 1.08996 * 109.47483 * 174.74471 * 1 2 3 30 30 H 1.09001 * 109.47184 * 294.74090 * 1 2 3 31 31 H 1.08996 * 109.47160 * 54.74062 * 1 2 3 32 32 H 0.96999 * 119.99877 * 354.70191 * 7 6 4 33 33 H 1.08997 * 109.46918 * 90.00037 * 13 12 2 34 34 H 1.08995 * 109.46858 * 209.99967 * 13 12 2 35 35 H 1.09007 * 109.46890 * 329.99803 * 13 12 2 36 36 H 1.08998 * 109.47296 * 93.10760 * 18 17 14 37 37 H 1.09005 * 109.47042 * 213.10407 * 18 17 14 38 38 H 1.08996 * 109.46955 * 333.09877 * 18 17 14 39 39 H 1.08996 * 109.50733 * 182.19347 * 21 19 17 40 40 H 1.08997 * 109.50282 * 302.31534 * 21 19 17 41 41 H 1.08993 * 109.46053 * 179.19832 * 22 21 19 42 42 H 1.09004 * 109.46212 * 299.17196 * 22 21 19 43 43 H 1.09008 * 109.46594 * 63.95494 * 24 23 22 44 44 H 1.08994 * 109.47004 * 183.95487 * 24 23 22 45 45 H 1.08993 * 109.47073 * 303.95862 * 24 23 22 46 46 H 1.08997 * 109.46733 * 181.76301 * 25 23 22 47 47 H 1.09007 * 109.46522 * 301.72788 * 25 23 22 48 48 H 1.09002 * 109.47391 * 186.05862 * 28 26 25 49 49 H 1.08996 * 109.47539 * 306.06648 * 28 26 25 50 50 H 1.09004 * 109.46762 * 66.06518 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6631 -1.5816 1.1313 6 6 1.6867 -0.2484 2.4827 7 7 1.7165 -1.0624 3.5152 8 14 1.1835 1.5355 2.7139 9 1 2.3862 2.3548 3.0096 10 1 0.5389 2.0330 1.4719 11 1 0.2253 1.6371 3.8438 12 7 2.0182 -0.6907 -1.1962 13 6 1.6643 -2.0932 -1.4281 14 16 2.9703 0.1141 -2.2863 15 8 2.8225 -0.5646 -3.5260 16 8 2.6903 1.4972 -2.1193 17 7 4.5436 -0.1043 -1.8181 18 6 5.1192 -1.4512 -1.7900 19 6 5.3599 1.0493 -1.4321 20 1 4.7981 1.6783 -0.7416 21 6 6.6436 0.5637 -0.7531 22 6 7.4565 -0.2697 -1.7465 23 7 7.7824 0.5480 -2.9218 24 6 8.6788 -0.1748 -3.8339 25 6 6.5658 0.9866 -3.6174 26 6 5.7264 1.8574 -2.6800 27 1 6.3007 2.7368 -2.3884 28 6 4.4484 2.2961 -3.3979 29 1 -0.3634 -1.0233 -0.0941 30 1 -0.3633 0.4301 0.9333 31 1 -0.3633 0.5932 -0.8391 32 1 1.9067 -2.0046 3.3847 33 1 0.7374 -2.1443 -1.9994 34 1 2.4627 -2.5819 -1.9865 35 1 1.5294 -2.5969 -0.4709 36 1 5.6155 -1.6542 -2.7390 37 1 5.8443 -1.5197 -0.9790 38 1 4.3263 -2.1819 -1.6310 39 1 7.2324 1.4225 -0.4312 40 1 6.3884 -0.0482 0.1121 41 1 8.3778 -0.6051 -1.2705 42 1 6.8722 -1.1358 -2.0575 43 1 8.1674 -1.0548 -4.2242 44 1 8.9603 0.4782 -4.6599 45 1 9.5737 -0.4843 -3.2942 46 1 6.8403 1.5636 -4.5005 47 1 5.9858 0.1145 -3.9196 48 1 3.9035 3.0020 -2.7710 49 1 4.7080 2.7742 -4.3423 50 1 3.8231 1.4245 -3.5917 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407976159.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:32 Heat of formation + Delta-G solvation = -39.585764 kcal Electronic energy + Delta-G solvation = -30816.627236 eV Core-core repulsion = 27007.045459 eV Total energy + Delta-G solvation = -3809.581777 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.15936 -38.43932 -38.13185 -37.21491 -36.57560 -34.70209 -34.30089 -32.21135 -31.61853 -28.86491 -27.99992 -27.25690 -26.60416 -26.03616 -23.42586 -22.71984 -22.38546 -21.12605 -19.75746 -19.47833 -18.89540 -18.47736 -17.49317 -16.67886 -16.37353 -16.23173 -15.78358 -15.61937 -15.50782 -15.30627 -14.95304 -14.79066 -14.73674 -14.37022 -14.01158 -13.95696 -13.74047 -13.60892 -13.44695 -13.27591 -13.20419 -13.12055 -13.04232 -13.01105 -12.88213 -12.64795 -12.47917 -12.32973 -11.98008 -11.96286 -11.82318 -11.67274 -11.50758 -11.38658 -11.26764 -11.12811 -10.42169 -10.00494 -9.79688 -9.12882 -8.66250 -6.28448 -0.38777 1.51765 1.52690 1.71706 1.90049 2.46627 2.49425 2.99791 3.05195 3.36396 3.54183 3.65528 3.82563 3.86463 4.05330 4.16792 4.32968 4.33888 4.41684 4.42987 4.43371 4.49203 4.56345 4.57635 4.61454 4.65947 4.67973 4.71824 4.78874 4.79730 4.86986 4.88565 4.94986 5.01970 5.04225 5.05067 5.10821 5.20487 5.26544 5.27807 5.32764 5.52215 5.62291 5.83691 6.00396 6.11638 6.12608 6.17598 6.69077 7.42173 8.67118 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015620 B = 0.005083 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.169765 B = 5507.699928 C = 5917.424245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.250 3.750 3 H 0.041 0.959 4 C -0.603 4.603 5 H 0.042 0.958 6 C 0.002 3.998 7 N -0.925 5.925 8 Si 1.054 2.946 9 H -0.274 1.274 10 H -0.248 1.248 11 H -0.284 1.284 12 N -0.998 5.998 13 C 0.099 3.901 14 S 2.795 3.205 15 O -1.012 7.012 16 O -0.996 6.996 17 N -0.999 5.999 18 C 0.083 3.917 19 C 0.152 3.848 20 H 0.072 0.928 21 C -0.111 4.111 22 C 0.017 3.983 23 N -0.546 5.546 24 C 0.025 3.975 25 C 0.065 3.935 26 C -0.103 4.103 27 H 0.109 0.891 28 C -0.138 4.138 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.259 0.741 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.100 0.900 38 H 0.057 0.943 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.021 0.979 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.022 0.978 48 H 0.080 0.920 49 H 0.073 0.927 50 H -0.006 1.006 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.596 1.765 -12.688 17.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.144 3.856 3 H 0.059 0.941 4 C -0.641 4.641 5 H 0.060 0.940 6 C -0.200 4.200 7 N -0.560 5.560 8 Si 0.876 3.124 9 H -0.200 1.200 10 H -0.172 1.172 11 H -0.210 1.210 12 N -0.838 5.838 13 C -0.047 4.047 14 S 2.807 3.193 15 O -0.996 6.996 16 O -0.981 6.981 17 N -0.840 5.840 18 C -0.062 4.062 19 C 0.046 3.954 20 H 0.090 0.910 21 C -0.150 4.150 22 C -0.110 4.110 23 N -0.270 5.270 24 C -0.122 4.122 25 C -0.063 4.063 26 C -0.123 4.123 27 H 0.128 0.872 28 C -0.197 4.197 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.119 0.881 38 H 0.076 0.924 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.089 0.911 43 H 0.040 0.960 44 H 0.093 0.907 45 H 0.098 0.902 46 H 0.102 0.898 47 H 0.040 0.960 48 H 0.099 0.901 49 H 0.092 0.908 50 H 0.012 0.988 Dipole moment (debyes) X Y Z Total from point charges 11.114 3.725 -12.149 16.882 hybrid contribution -0.178 -2.521 -0.743 2.634 sum 10.936 1.205 -12.892 16.948 Atomic orbital electron populations 1.22356 0.97485 1.01131 1.00201 1.18782 0.91965 0.92272 0.82577 0.94128 1.22191 1.34705 1.15487 0.91750 0.93983 1.26600 0.93797 1.07279 0.92282 1.70931 1.45499 1.05357 1.34221 0.84001 0.77967 0.73099 0.77302 1.19959 1.17201 1.20990 1.57542 1.65482 1.22240 1.38493 1.21398 1.00482 0.80950 1.01824 1.01635 0.72708 0.72305 0.72633 1.93529 1.86595 1.76806 1.42659 1.93647 1.84958 1.32267 1.87203 1.57723 1.28909 1.13234 1.84110 1.22086 1.00189 0.81204 1.02684 1.21055 0.92717 0.85713 0.95911 0.90991 1.21734 0.93823 1.01640 0.97781 1.23063 1.00489 0.95946 0.91461 1.61925 1.15291 1.41451 1.08329 1.22391 0.96539 0.96743 0.96569 1.22059 0.90121 0.97768 0.96381 1.21688 0.96003 0.99380 0.95243 0.87249 1.22316 0.95897 0.99628 1.01834 0.92711 0.92814 0.93752 0.93214 0.92575 0.91122 0.91172 0.91604 0.88146 0.92441 0.88758 0.90638 0.89398 0.91101 0.95992 0.90747 0.90190 0.89799 0.96020 0.90112 0.90811 0.98763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.47 8.60 71.98 0.62 -5.85 16 2 C 0.25 11.37 2.18 44.24 0.10 11.47 16 3 H 0.04 1.93 5.72 -2.39 -0.01 1.92 16 4 C -0.60 -31.00 8.26 25.60 0.21 -30.79 16 5 H 0.04 2.31 7.61 -2.91 -0.02 2.29 16 6 C 0.00 0.12 5.19 84.66 0.44 0.55 16 7 N -0.93 -53.85 13.70 21.45 0.29 -53.56 16 8 Si 1.05 47.80 26.22 68.60 1.80 49.59 16 9 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 10 H -0.25 -10.35 5.75 99.48 0.57 -9.78 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 12 N -1.00 -40.17 3.12 -520.45 -1.62 -41.79 16 13 C 0.10 3.50 8.86 127.77 1.13 4.63 16 14 S 2.80 106.93 3.87 -56.49 -0.22 106.71 16 15 O -1.01 -41.08 16.47 -128.00 -2.11 -43.19 16 16 O -1.00 -41.20 11.43 -128.00 -1.46 -42.66 16 17 N -1.00 -31.55 2.64 -516.91 -1.36 -32.91 16 18 C 0.08 2.18 8.16 127.77 1.04 3.22 16 19 C 0.15 4.36 2.62 45.07 0.12 4.48 16 20 H 0.07 2.33 7.80 -2.38 -0.02 2.31 16 21 C -0.11 -2.56 5.11 30.65 0.16 -2.40 16 22 C 0.02 0.35 4.70 86.33 0.41 0.75 16 23 N -0.55 -11.08 4.91 -922.61 -4.53 -15.61 16 24 C 0.03 0.41 9.59 127.69 1.22 1.63 16 25 C 0.06 1.50 4.54 86.33 0.39 1.90 16 26 C -0.10 -2.65 2.71 -10.74 -0.03 -2.68 16 27 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 28 C -0.14 -4.11 7.40 71.98 0.53 -3.58 16 29 H 0.05 2.22 7.50 -2.39 -0.02 2.21 16 30 H 0.05 2.30 4.97 -2.39 -0.01 2.28 16 31 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.26 15.13 8.73 -92.71 -0.81 14.32 16 33 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.07 2.16 6.23 -2.39 -0.01 2.15 16 35 H 0.07 2.63 7.03 -2.38 -0.02 2.61 16 36 H 0.07 1.55 6.09 -2.39 -0.01 1.54 16 37 H 0.10 2.30 4.87 -2.38 -0.01 2.29 16 38 H 0.06 1.56 6.04 -2.39 -0.01 1.54 16 39 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.08 1.83 7.33 -2.39 -0.02 1.81 16 41 H 0.09 1.48 8.09 -2.39 -0.02 1.46 16 42 H 0.07 1.44 3.15 -2.71 -0.01 1.43 16 43 H 0.02 0.36 8.14 -2.38 -0.02 0.34 16 44 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.08 1.07 8.10 -2.39 -0.02 1.05 16 46 H 0.08 1.73 8.12 -2.39 -0.02 1.71 16 47 H 0.02 0.58 6.68 -2.38 -0.02 0.56 16 48 H 0.08 2.60 6.89 -2.39 -0.02 2.58 16 49 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 50 H -0.01 -0.22 3.65 -18.71 -0.07 -0.29 16 Total: -1.00 -64.21 361.82 -2.17 -66.38 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: 0.70 Total: 23.71 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 6.34 Total: -16.67 kcal Atomic # 7 Polarization: -136.65 SS G_CDS: -7.22 Total: -143.87 kcal Atomic # 8 Polarization: -82.28 SS G_CDS: -3.57 Total: -85.85 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 1.80 Total: 49.59 kcal Atomic # 16 Polarization: 106.93 SS G_CDS: -0.22 Total: 106.71 kcal Total: -64.21 -2.17 -66.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407976159.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.795 kcal (2) G-P(sol) polarization free energy of solvation -64.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds