Wall clock time and date at job start Tue Mar 31 2020 17:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47394 * 2 1 4 4 C 1.50701 * 109.47688 * 120.00488 * 2 1 3 5 5 H 1.07996 * 120.00112 * 119.99229 * 4 2 1 6 6 C 1.37879 * 119.99696 * 300.00577 * 4 2 1 7 7 N 1.31519 * 119.99870 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99974 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47275 * 59.99387 * 8 6 4 10 10 H 1.48506 * 109.47146 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.46838 * 299.99241 * 8 6 4 12 12 N 1.46502 * 109.46873 * 240.00551 * 2 1 3 13 13 C 1.46498 * 119.99824 * 299.99395 * 12 2 1 14 14 S 1.65596 * 120.00149 * 120.00345 * 12 2 1 15 15 O 1.42101 * 106.40045 * 336.45419 * 14 12 2 16 16 O 1.42106 * 106.40310 * 203.53693 * 14 12 2 17 17 N 1.65597 * 107.22389 * 89.99526 * 14 12 2 18 18 C 1.46498 * 119.99910 * 270.27980 * 17 14 12 19 19 C 1.46506 * 119.99791 * 89.99756 * 17 14 12 20 20 H 1.08998 * 109.52312 * 359.87793 * 19 17 14 21 21 C 1.53117 * 109.52120 * 239.68309 * 19 17 14 22 22 C 1.53044 * 109.27449 * 182.44185 * 21 19 17 23 23 N 1.46842 * 109.52316 * 59.18233 * 22 21 19 24 24 C 1.46898 * 110.99989 * 174.15818 * 23 22 21 25 25 C 1.46840 * 111.20022 * 298.25807 * 23 22 21 26 26 C 1.53042 * 109.52658 * 61.73898 * 25 23 22 27 27 H 1.09002 * 109.53270 * 60.78326 * 26 25 23 28 28 C 1.52999 * 109.50236 * 180.88134 * 26 25 23 29 29 H 1.09001 * 109.47394 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46819 * 299.99299 * 1 2 3 31 31 H 1.08999 * 109.47174 * 59.99286 * 1 2 3 32 32 H 0.97004 * 119.99675 * 180.02562 * 7 6 4 33 33 H 1.08996 * 109.47839 * 270.00106 * 13 12 2 34 34 H 1.09002 * 109.47537 * 30.00496 * 13 12 2 35 35 H 1.09005 * 109.47090 * 150.00391 * 13 12 2 36 36 H 1.08998 * 109.46661 * 269.71661 * 18 17 14 37 37 H 1.08993 * 109.47575 * 29.72374 * 18 17 14 38 38 H 1.09001 * 109.46870 * 149.72331 * 18 17 14 39 39 H 1.08999 * 109.50686 * 302.38147 * 21 19 17 40 40 H 1.09000 * 109.50197 * 62.50861 * 21 19 17 41 41 H 1.08994 * 109.46097 * 299.16247 * 22 21 19 42 42 H 1.09002 * 109.45279 * 179.19124 * 22 21 19 43 43 H 1.08996 * 109.47092 * 184.21170 * 24 23 22 44 44 H 1.09002 * 109.47358 * 304.20958 * 24 23 22 45 45 H 1.09001 * 109.47247 * 64.20862 * 24 23 22 46 46 H 1.08999 * 109.46003 * 301.72659 * 25 23 22 47 47 H 1.08997 * 109.45749 * 181.75325 * 25 23 22 48 48 H 1.09004 * 109.46422 * 179.80524 * 28 26 25 49 49 H 1.08994 * 109.47236 * 299.80083 * 28 26 25 50 50 H 1.08994 * 109.47058 * 59.80806 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9435 0.8299 2.6034 8 14 2.3215 -1.1206 4.0078 9 1 3.8065 -1.1212 4.0080 10 1 1.8270 -0.4203 5.2204 11 1 1.8259 -2.5205 4.0075 12 7 2.0183 -0.6905 -1.1963 13 6 1.6644 -2.0931 -1.4281 14 16 2.9703 0.1143 -2.2862 15 8 2.6903 1.4974 -2.1192 16 8 2.8227 -0.5644 -3.5260 17 7 4.5437 -0.1041 -1.8181 18 6 5.1705 0.8425 -0.8922 19 6 5.3068 -1.2473 -2.3251 20 1 4.6778 -1.8391 -2.9900 21 6 5.7705 -2.1141 -1.1512 22 6 6.6180 -3.2725 -1.6823 23 7 7.7777 -2.7394 -2.4084 24 6 8.6871 -3.8195 -2.8135 25 6 7.3577 -1.9424 -3.5680 26 6 6.5322 -0.7443 -3.0932 27 1 7.1401 -0.1190 -2.4394 28 6 6.0764 0.0735 -4.3033 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 0.7094 1.1614 3.4845 33 1 2.4157 -2.7377 -0.9719 34 1 0.6904 -2.3002 -0.9848 35 1 1.6237 -2.2851 -2.5003 36 1 5.6459 1.6435 -1.4582 37 1 4.4110 1.2639 -0.2339 38 1 5.9213 0.3241 -0.2957 39 1 6.3668 -1.5109 -0.4666 40 1 4.9015 -2.5101 -0.6257 41 1 6.0170 -3.8831 -2.3559 42 1 6.9617 -3.8834 -0.8475 43 1 9.5729 -3.3917 -3.2830 44 1 8.9828 -4.3941 -1.9357 45 1 8.1805 -4.4743 -3.5226 46 1 6.7532 -2.5593 -4.2329 47 1 8.2386 -1.5874 -4.1028 48 1 5.4856 0.9247 -3.9647 49 1 6.9490 0.4313 -4.8496 50 1 5.4697 -0.5527 -4.9574 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407976160.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:36 Heat of formation + Delta-G solvation = -69.872724 kcal Electronic energy + Delta-G solvation = -30094.594449 eV Core-core repulsion = 26283.699331 eV Total energy + Delta-G solvation = -3810.895118 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.57735 -36.71625 -36.13560 -36.06565 -35.21857 -32.89369 -32.59396 -31.40636 -29.06619 -27.07622 -26.81731 -25.57500 -25.15382 -25.11839 -22.58599 -21.62731 -20.68644 -19.50081 -18.41955 -17.21360 -16.84917 -16.48540 -16.01171 -15.42643 -15.30413 -14.82735 -14.59443 -14.48916 -14.26075 -13.60399 -13.36238 -13.26075 -13.19695 -12.78137 -12.55767 -12.50946 -12.46259 -12.09767 -11.95697 -11.91195 -11.76837 -11.62259 -11.48334 -11.35969 -11.25585 -11.15756 -11.07130 -10.99549 -10.83440 -10.70318 -10.63987 -10.45760 -10.28034 -10.22571 -10.01569 -9.27610 -8.61904 -8.48415 -8.46326 -7.93734 -6.09537 -4.17968 1.24232 3.24829 3.31036 3.31561 3.46268 3.79740 4.10360 4.35038 4.64190 4.77967 4.81174 4.96330 5.05860 5.20741 5.23318 5.24642 5.33031 5.34875 5.43440 5.55175 5.60776 5.66297 5.67862 5.69752 5.74447 5.86827 5.89698 5.98631 6.00385 6.13086 6.18230 6.22951 6.29461 6.34193 6.37607 6.58454 6.64808 6.81990 6.84754 6.92083 6.96015 7.00582 7.10534 7.50698 7.63342 7.77706 8.04113 8.26123 8.85209 9.48441 10.95382 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.004954 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.000807 B = 5651.133642 C = 6828.131976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.268 3.732 3 H 0.057 0.943 4 C -0.523 4.523 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.278 1.278 12 N -0.991 5.991 13 C 0.101 3.899 14 S 2.778 3.222 15 O -0.979 6.979 16 O -0.997 6.997 17 N -1.001 6.001 18 C 0.098 3.902 19 C 0.157 3.843 20 H 0.091 0.909 21 C -0.129 4.129 22 C 0.058 3.942 23 N -0.545 5.545 24 C 0.026 3.974 25 C 0.063 3.937 26 C -0.093 4.093 27 H 0.085 0.915 28 C -0.147 4.147 29 H 0.032 0.968 30 H 0.093 0.907 31 H 0.012 0.988 32 H 0.264 0.736 33 H 0.041 0.959 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.047 0.953 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.034 0.966 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.023 0.977 46 H 0.035 0.965 47 H 0.075 0.925 48 H 0.055 0.945 49 H 0.055 0.945 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.928 -6.837 -9.455 16.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.165 3.835 3 H 0.075 0.925 4 C -0.562 4.562 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.723 3.277 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.204 1.204 12 N -0.833 5.833 13 C -0.046 4.046 14 S 2.789 3.211 15 O -0.963 6.963 16 O -0.982 6.982 17 N -0.838 5.838 18 C -0.047 4.047 19 C 0.050 3.950 20 H 0.109 0.891 21 C -0.168 4.168 22 C -0.071 4.071 23 N -0.269 5.269 24 C -0.122 4.122 25 C -0.065 4.065 26 C -0.114 4.114 27 H 0.103 0.897 28 C -0.205 4.205 29 H 0.052 0.948 30 H 0.112 0.888 31 H 0.031 0.969 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.052 0.948 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.042 0.958 46 H 0.053 0.947 47 H 0.094 0.906 48 H 0.074 0.926 49 H 0.074 0.926 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.783 -5.875 -9.742 16.379 hybrid contribution 0.008 -1.288 0.849 1.542 sum 11.791 -7.163 -8.893 16.414 Atomic orbital electron populations 1.22073 0.98149 0.99577 1.00794 1.18715 0.91781 0.92624 0.80346 0.92501 1.21321 1.31799 1.13024 0.90062 0.92037 1.24917 0.94981 0.94962 0.98926 1.69873 1.36223 1.22593 1.23876 0.86613 0.79172 0.79664 0.82219 1.20245 1.21300 1.20362 1.57752 1.64441 1.21320 1.39786 1.21233 1.01737 0.81962 0.99664 1.01961 0.72466 0.73475 0.73226 1.93577 1.83777 1.32200 1.86775 1.93507 1.86014 1.76362 1.42271 1.57965 1.30392 1.35222 1.60186 1.21371 0.99593 0.91335 0.92410 1.20865 0.92989 0.86468 0.94673 0.89070 1.22001 0.99939 0.96592 0.98289 1.22096 0.90800 0.96374 0.97785 1.61923 1.17108 1.23185 1.24700 1.22330 0.96493 0.93265 1.00122 1.22134 0.98605 0.94483 0.91323 1.21459 0.96036 0.96454 0.97449 0.89706 1.21788 1.01070 1.00256 0.97416 0.94844 0.88840 0.96923 0.92609 0.94013 0.90697 0.92259 0.93417 0.90239 0.91212 0.90177 0.90242 0.94761 0.90487 0.91509 0.91427 0.95797 0.94654 0.90624 0.92572 0.92599 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 8.95 37.16 0.33 -3.14 16 2 C 0.27 6.48 2.62 -69.08 -0.18 6.30 16 3 H 0.06 1.53 6.91 -51.93 -0.36 1.17 16 4 C -0.52 -13.11 8.37 -34.44 -0.29 -13.40 16 5 H 0.06 1.51 7.65 -52.49 -0.40 1.10 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.05 11.32 55.43 0.63 -23.42 16 8 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 N -0.99 -20.51 3.12 -115.85 -0.36 -20.87 16 13 C 0.10 1.79 9.90 59.85 0.59 2.38 16 14 S 2.78 55.22 6.05 -107.50 -0.65 54.57 16 15 O -0.98 -22.57 15.78 -57.17 -0.90 -23.47 16 16 O -1.00 -20.13 15.31 -57.17 -0.88 -21.01 16 17 N -1.00 -16.38 2.49 -114.48 -0.28 -16.66 16 18 C 0.10 1.53 9.32 59.85 0.56 2.08 16 19 C 0.16 2.20 2.00 -67.81 -0.14 2.06 16 20 H 0.09 1.35 6.92 -51.93 -0.36 0.99 16 21 C -0.13 -1.67 5.39 -26.65 -0.14 -1.82 16 22 C 0.06 0.64 5.46 -3.83 -0.02 0.62 16 23 N -0.54 -5.85 4.91 -242.97 -1.19 -7.04 16 24 C 0.03 0.22 9.59 60.06 0.58 0.80 16 25 C 0.06 0.67 4.75 -3.83 -0.02 0.65 16 26 C -0.09 -1.13 2.30 -90.54 -0.21 -1.34 16 27 H 0.08 1.04 7.61 -51.93 -0.39 0.65 16 28 C -0.15 -1.82 9.07 37.16 0.34 -1.48 16 29 H 0.03 0.74 6.66 -51.93 -0.35 0.39 16 30 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 31 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 1.33 6.43 -51.93 -0.33 1.00 16 35 H 0.06 0.97 7.02 -51.93 -0.36 0.60 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 1.42 7.79 -51.93 -0.40 1.02 16 38 H 0.07 0.95 6.36 -51.93 -0.33 0.62 16 39 H 0.08 1.07 6.56 -51.93 -0.34 0.73 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 45 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 46 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 0.71 8.12 -51.93 -0.42 0.29 16 48 H 0.06 0.78 7.68 -51.93 -0.40 0.38 16 49 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 50 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 390.52 15.07 5.89 5.89 Total: -1.00 -29.53 390.52 -10.44 -39.97 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -8.97 Total: 1.65 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 1.31 Total: -4.71 kcal Atomic # 7 Polarization: -66.79 SS G_CDS: -1.21 Total: -68.00 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -1.78 Total: -44.48 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Atomic # 16 Polarization: 55.22 SS G_CDS: -0.65 Total: 54.57 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.53 -10.44 -39.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407976160.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.905 kcal (2) G-P(sol) polarization free energy of solvation -29.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds