Wall clock time and date at job start Tue Mar 31 2020 17:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47394 * 2 1 4 4 C 1.50701 * 109.47688 * 120.00488 * 2 1 3 5 5 H 1.07996 * 120.00112 * 119.99229 * 4 2 1 6 6 C 1.37879 * 119.99696 * 300.00577 * 4 2 1 7 7 N 1.31519 * 119.99870 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99974 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47275 * 59.99387 * 8 6 4 10 10 H 1.48506 * 109.47146 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.46838 * 299.99241 * 8 6 4 12 12 N 1.46502 * 109.46873 * 240.00551 * 2 1 3 13 13 C 1.46498 * 119.99824 * 299.99395 * 12 2 1 14 14 S 1.65596 * 120.00149 * 120.00345 * 12 2 1 15 15 O 1.42101 * 106.40045 * 336.45419 * 14 12 2 16 16 O 1.42106 * 106.40310 * 203.53693 * 14 12 2 17 17 N 1.65597 * 107.22389 * 89.99526 * 14 12 2 18 18 C 1.46498 * 119.99910 * 270.27980 * 17 14 12 19 19 C 1.46506 * 119.99791 * 89.99756 * 17 14 12 20 20 H 1.08998 * 109.52312 * 359.87793 * 19 17 14 21 21 C 1.53117 * 109.52120 * 239.68309 * 19 17 14 22 22 C 1.53044 * 109.27449 * 182.44185 * 21 19 17 23 23 N 1.46842 * 109.52316 * 59.18233 * 22 21 19 24 24 C 1.46898 * 110.99989 * 174.15818 * 23 22 21 25 25 C 1.46840 * 111.20022 * 298.25807 * 23 22 21 26 26 C 1.53042 * 109.52658 * 61.73898 * 25 23 22 27 27 H 1.09002 * 109.53270 * 60.78326 * 26 25 23 28 28 C 1.52999 * 109.50236 * 180.88134 * 26 25 23 29 29 H 1.09001 * 109.47394 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46819 * 299.99299 * 1 2 3 31 31 H 1.08999 * 109.47174 * 59.99286 * 1 2 3 32 32 H 0.97004 * 119.99675 * 180.02562 * 7 6 4 33 33 H 1.08996 * 109.47839 * 270.00106 * 13 12 2 34 34 H 1.09002 * 109.47537 * 30.00496 * 13 12 2 35 35 H 1.09005 * 109.47090 * 150.00391 * 13 12 2 36 36 H 1.08998 * 109.46661 * 269.71661 * 18 17 14 37 37 H 1.08993 * 109.47575 * 29.72374 * 18 17 14 38 38 H 1.09001 * 109.46870 * 149.72331 * 18 17 14 39 39 H 1.08999 * 109.50686 * 302.38147 * 21 19 17 40 40 H 1.09000 * 109.50197 * 62.50861 * 21 19 17 41 41 H 1.08994 * 109.46097 * 299.16247 * 22 21 19 42 42 H 1.09002 * 109.45279 * 179.19124 * 22 21 19 43 43 H 1.08996 * 109.47092 * 184.21170 * 24 23 22 44 44 H 1.09002 * 109.47358 * 304.20958 * 24 23 22 45 45 H 1.09001 * 109.47247 * 64.20862 * 24 23 22 46 46 H 1.08999 * 109.46003 * 301.72659 * 25 23 22 47 47 H 1.08997 * 109.45749 * 181.75325 * 25 23 22 48 48 H 1.09004 * 109.46422 * 179.80524 * 28 26 25 49 49 H 1.08994 * 109.47236 * 299.80083 * 28 26 25 50 50 H 1.08994 * 109.47058 * 59.80806 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9435 0.8299 2.6034 8 14 2.3215 -1.1206 4.0078 9 1 3.8065 -1.1212 4.0080 10 1 1.8270 -0.4203 5.2204 11 1 1.8259 -2.5205 4.0075 12 7 2.0183 -0.6905 -1.1963 13 6 1.6644 -2.0931 -1.4281 14 16 2.9703 0.1143 -2.2862 15 8 2.6903 1.4974 -2.1192 16 8 2.8227 -0.5644 -3.5260 17 7 4.5437 -0.1041 -1.8181 18 6 5.1705 0.8425 -0.8922 19 6 5.3068 -1.2473 -2.3251 20 1 4.6778 -1.8391 -2.9900 21 6 5.7705 -2.1141 -1.1512 22 6 6.6180 -3.2725 -1.6823 23 7 7.7777 -2.7394 -2.4084 24 6 8.6871 -3.8195 -2.8135 25 6 7.3577 -1.9424 -3.5680 26 6 6.5322 -0.7443 -3.0932 27 1 7.1401 -0.1190 -2.4394 28 6 6.0764 0.0735 -4.3033 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 0.7094 1.1614 3.4845 33 1 2.4157 -2.7377 -0.9719 34 1 0.6904 -2.3002 -0.9848 35 1 1.6237 -2.2851 -2.5003 36 1 5.6459 1.6435 -1.4582 37 1 4.4110 1.2639 -0.2339 38 1 5.9213 0.3241 -0.2957 39 1 6.3668 -1.5109 -0.4666 40 1 4.9015 -2.5101 -0.6257 41 1 6.0170 -3.8831 -2.3559 42 1 6.9617 -3.8834 -0.8475 43 1 9.5729 -3.3917 -3.2830 44 1 8.9828 -4.3941 -1.9357 45 1 8.1805 -4.4743 -3.5226 46 1 6.7532 -2.5593 -4.2329 47 1 8.2386 -1.5874 -4.1028 48 1 5.4856 0.9247 -3.9647 49 1 6.9490 0.4313 -4.8496 50 1 5.4697 -0.5527 -4.9574 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407976160.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:35 Heat of formation + Delta-G solvation = -89.668355 kcal Electronic energy + Delta-G solvation = -30095.452852 eV Core-core repulsion = 26283.699331 eV Total energy + Delta-G solvation = -3811.753521 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.55542 -38.38537 -37.88702 -37.14045 -36.89028 -34.49503 -33.90454 -32.40985 -30.91178 -28.05830 -27.80403 -27.30745 -26.96767 -26.19160 -23.57396 -22.56351 -22.49434 -20.53478 -19.91034 -18.77787 -18.44975 -18.32633 -17.37340 -16.81004 -16.29786 -16.25169 -15.68259 -15.56481 -15.43385 -15.22109 -14.82964 -14.62946 -14.40958 -14.37347 -13.72687 -13.65331 -13.47006 -13.42694 -13.36586 -13.26180 -13.19888 -13.05165 -12.92377 -12.79646 -12.75456 -12.64045 -12.60961 -12.37536 -12.24562 -12.16516 -12.05680 -11.87261 -11.68699 -11.63413 -11.31611 -11.12591 -10.47415 -9.91499 -9.62545 -9.24835 -8.06617 -6.21277 -0.33093 1.47929 1.48286 1.55569 1.96382 2.46748 2.54719 3.00854 3.21811 3.34815 3.58337 3.83716 3.93295 4.03838 4.13841 4.18858 4.37192 4.43053 4.50787 4.55887 4.62903 4.68029 4.69764 4.70838 4.76307 4.77957 4.81433 4.86428 4.92935 4.94914 4.96101 5.00437 5.07167 5.08749 5.12248 5.16890 5.19947 5.26146 5.31408 5.50538 5.58999 5.65087 5.79661 5.88808 6.11525 6.13830 6.18117 6.30936 6.87448 7.48399 8.97786 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.004954 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.000807 B = 5651.133642 C = 6828.131976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.274 3.726 3 H 0.023 0.977 4 C -0.523 4.523 5 H 0.068 0.932 6 C 0.018 3.982 7 N -0.919 5.919 8 Si 0.956 3.044 9 H -0.270 1.270 10 H -0.291 1.291 11 H -0.271 1.271 12 N -0.998 5.998 13 C 0.096 3.904 14 S 2.787 3.213 15 O -1.016 7.016 16 O -1.002 7.002 17 N -0.994 5.994 18 C 0.099 3.901 19 C 0.152 3.848 20 H 0.084 0.916 21 C -0.124 4.124 22 C 0.062 3.938 23 N -0.554 5.554 24 C 0.026 3.974 25 C 0.067 3.933 26 C -0.088 4.088 27 H 0.086 0.914 28 C -0.148 4.148 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.016 0.984 32 H 0.263 0.737 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.050 0.950 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.036 0.964 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.027 0.973 46 H 0.034 0.966 47 H 0.093 0.907 48 H 0.035 0.965 49 H 0.080 0.920 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.114 -8.803 -9.733 19.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.170 3.830 3 H 0.041 0.959 4 C -0.562 4.562 5 H 0.086 0.914 6 C -0.181 4.181 7 N -0.558 5.558 8 Si 0.782 3.218 9 H -0.195 1.195 10 H -0.217 1.217 11 H -0.196 1.196 12 N -0.839 5.839 13 C -0.050 4.050 14 S 2.798 3.202 15 O -1.001 7.001 16 O -0.986 6.986 17 N -0.833 5.833 18 C -0.047 4.047 19 C 0.046 3.954 20 H 0.102 0.898 21 C -0.164 4.164 22 C -0.067 4.067 23 N -0.279 5.279 24 C -0.122 4.122 25 C -0.062 4.062 26 C -0.109 4.109 27 H 0.105 0.895 28 C -0.206 4.206 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.035 0.965 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.054 0.946 42 H 0.106 0.894 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.046 0.954 46 H 0.053 0.947 47 H 0.111 0.889 48 H 0.054 0.946 49 H 0.099 0.901 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.970 -7.869 -10.043 18.919 hybrid contribution -0.631 -0.679 0.862 1.266 sum 13.339 -8.548 -9.181 18.311 Atomic orbital electron populations 1.21972 0.98140 1.00060 0.99912 1.18386 0.91781 0.91269 0.81545 0.95945 1.21525 1.31402 1.12915 0.90405 0.91422 1.25652 0.95207 0.95559 1.01702 1.70014 1.37475 1.24005 1.24289 0.85645 0.78852 0.78651 0.78640 1.19491 1.21668 1.19637 1.57666 1.65257 1.22391 1.38610 1.21413 1.02179 0.80539 1.00825 1.01498 0.73125 0.72521 0.73023 1.93524 1.84757 1.34560 1.87211 1.93490 1.86483 1.76190 1.42431 1.57707 1.29134 1.36221 1.60278 1.21422 0.99012 0.91884 0.92337 1.21107 0.93343 0.85676 0.95288 0.89840 1.21944 0.99777 0.97034 0.97628 1.22044 0.90845 0.95477 0.98294 1.61925 1.17006 1.24121 1.24825 1.22384 0.96318 0.92797 1.00652 1.22106 0.98962 0.93728 0.91357 1.21427 0.95200 0.97239 0.97045 0.89518 1.21796 1.01723 0.99419 0.97629 0.93580 0.91039 0.96479 0.92809 0.92449 0.90787 0.90795 0.91815 0.93145 0.89087 0.90455 0.91428 0.94571 0.89404 0.90415 0.90719 0.95424 0.94737 0.88871 0.94629 0.90144 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.83 8.95 71.98 0.64 -6.19 16 2 C 0.27 13.51 2.62 44.24 0.12 13.63 16 3 H 0.02 1.27 6.91 -2.39 -0.02 1.25 16 4 C -0.52 -26.26 8.37 25.60 0.21 -26.04 16 5 H 0.07 3.25 7.65 -2.91 -0.02 3.23 16 6 C 0.02 0.95 5.30 84.65 0.45 1.40 16 7 N -0.92 -50.71 11.32 21.45 0.24 -50.47 16 8 Si 0.96 40.95 29.54 68.60 2.03 42.97 16 9 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 10 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 12 N -1.00 -41.47 3.12 -520.44 -1.62 -43.09 16 13 C 0.10 3.32 9.90 127.77 1.26 4.58 16 14 S 2.79 112.04 6.05 -56.49 -0.34 111.70 16 15 O -1.02 -48.45 15.78 -128.00 -2.02 -50.47 16 16 O -1.00 -40.23 15.31 -128.00 -1.96 -42.19 16 17 N -0.99 -32.26 2.49 -516.10 -1.28 -33.55 16 18 C 0.10 3.04 9.32 127.77 1.19 4.24 16 19 C 0.15 4.06 2.00 45.07 0.09 4.15 16 20 H 0.08 2.38 6.92 -2.39 -0.02 2.36 16 21 C -0.12 -3.01 5.39 30.65 0.17 -2.85 16 22 C 0.06 1.22 5.46 86.33 0.47 1.69 16 23 N -0.55 -10.25 4.91 -922.61 -4.53 -14.78 16 24 C 0.03 0.36 9.59 127.69 1.22 1.58 16 25 C 0.07 1.23 4.75 86.33 0.41 1.64 16 26 C -0.09 -1.98 2.30 -10.74 -0.02 -2.00 16 27 H 0.09 1.93 7.61 -2.39 -0.02 1.91 16 28 C -0.15 -3.43 9.07 71.98 0.65 -2.78 16 29 H 0.05 2.05 6.66 -2.39 -0.02 2.03 16 30 H 0.07 3.79 6.07 -2.39 -0.01 3.77 16 31 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 33 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.07 2.55 6.43 -2.39 -0.02 2.54 16 35 H 0.07 2.32 7.02 -2.38 -0.02 2.31 16 36 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.05 1.86 7.79 -2.39 -0.02 1.84 16 38 H 0.09 2.39 6.36 -2.39 -0.02 2.37 16 39 H 0.08 1.91 6.56 -2.39 -0.02 1.89 16 40 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.09 1.55 8.09 -2.39 -0.02 1.53 16 43 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.07 0.93 8.09 -2.39 -0.02 0.91 16 45 H 0.03 0.36 8.14 -2.39 -0.02 0.35 16 46 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.09 1.42 8.12 -2.39 -0.02 1.40 16 48 H 0.03 0.96 7.68 -2.38 -0.02 0.94 16 49 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -63.26 390.52 -1.73 -64.98 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.89 Total: 21.82 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: 6.87 Total: -6.94 kcal Atomic # 7 Polarization: -134.69 SS G_CDS: -7.19 Total: -141.89 kcal Atomic # 8 Polarization: -88.68 SS G_CDS: -3.98 Total: -92.66 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.97 kcal Atomic # 16 Polarization: 112.04 SS G_CDS: -0.34 Total: 111.70 kcal Total: -63.26 -1.73 -64.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407976160.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.684 kcal (2) G-P(sol) polarization free energy of solvation -63.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds