Wall clock time and date at job start Tue Mar 31 2020 17:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46805 * 2 1 4 4 C 1.50697 * 109.47196 * 240.00295 * 2 1 3 5 5 H 1.08001 * 120.00356 * 245.28838 * 4 2 1 6 6 C 1.37883 * 120.00087 * 65.28735 * 4 2 1 7 7 N 1.31509 * 119.99834 * 5.43376 * 6 4 2 8 8 Si 1.86803 * 119.99860 * 185.43131 * 6 4 2 9 9 H 1.48505 * 109.46963 * 94.99812 * 8 6 4 10 10 H 1.48504 * 109.47170 * 214.99482 * 8 6 4 11 11 H 1.48493 * 109.47442 * 335.00112 * 8 6 4 12 12 N 1.46490 * 109.47488 * 119.99983 * 2 1 3 13 13 C 1.46500 * 120.00110 * 60.00291 * 12 2 1 14 14 S 1.65603 * 120.00263 * 240.00294 * 12 2 1 15 15 O 1.42093 * 106.40369 * 203.53654 * 14 12 2 16 16 O 1.42098 * 106.39942 * 336.46047 * 14 12 2 17 17 N 1.65608 * 107.21621 * 89.99808 * 14 12 2 18 18 C 1.46498 * 119.99889 * 64.59662 * 17 14 12 19 19 C 1.46503 * 119.99603 * 244.59486 * 17 14 12 20 20 H 1.08987 * 109.52446 * 47.63100 * 19 17 14 21 21 C 1.53122 * 109.51692 * 167.75913 * 19 17 14 22 22 C 1.53033 * 109.27931 * 62.24951 * 21 19 17 23 23 N 1.46843 * 109.52587 * 59.18085 * 22 21 19 24 24 C 1.46898 * 111.00235 * 174.16035 * 23 22 21 25 25 C 1.46851 * 111.19809 * 298.25337 * 23 22 21 26 26 C 1.53048 * 109.51994 * 61.74049 * 25 23 22 27 27 H 1.09004 * 109.49865 * 60.76344 * 26 25 23 28 28 C 1.52994 * 109.50269 * 180.88029 * 26 25 23 29 29 H 1.09000 * 109.47146 * 54.70269 * 1 2 3 30 30 H 1.09007 * 109.46520 * 174.69646 * 1 2 3 31 31 H 1.08997 * 109.47181 * 294.69291 * 1 2 3 32 32 H 0.97008 * 120.00113 * 180.02562 * 7 6 4 33 33 H 1.08994 * 109.47466 * 89.99856 * 13 12 2 34 34 H 1.09002 * 109.47018 * 210.00427 * 13 12 2 35 35 H 1.09005 * 109.46831 * 329.99673 * 13 12 2 36 36 H 1.09000 * 109.47219 * 92.72933 * 18 17 14 37 37 H 1.09002 * 109.46759 * 212.72925 * 18 17 14 38 38 H 1.08996 * 109.47349 * 332.72774 * 18 17 14 39 39 H 1.09001 * 109.49947 * 182.19025 * 21 19 17 40 40 H 1.09001 * 109.50371 * 302.30558 * 21 19 17 41 41 H 1.09003 * 109.46087 * 179.19143 * 22 21 19 42 42 H 1.08998 * 109.46519 * 299.17208 * 22 21 19 43 43 H 1.08999 * 109.47371 * 63.94926 * 24 23 22 44 44 H 1.09002 * 109.47022 * 183.95035 * 24 23 22 45 45 H 1.08999 * 109.47223 * 303.94674 * 24 23 22 46 46 H 1.08993 * 109.46728 * 181.75372 * 25 23 22 47 47 H 1.08997 * 109.46332 * 301.73037 * 25 23 22 48 48 H 1.09002 * 109.47527 * 192.03334 * 28 26 25 49 49 H 1.09006 * 109.47619 * 312.03562 * 28 26 25 50 50 H 1.09002 * 109.47213 * 72.03224 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5810 -1.6356 -1.1338 6 6 1.7915 -0.1791 -2.4798 7 7 1.2183 0.9990 -2.5940 8 14 2.2796 -1.1327 -4.0102 9 1 1.1125 -1.9069 -4.5041 10 1 2.7261 -0.1849 -5.0626 11 1 3.3879 -2.0644 -3.6804 12 7 2.0184 -0.6905 1.1961 13 6 1.6646 -2.0931 1.4279 14 16 2.9705 0.1143 2.2862 15 8 3.7119 -0.8787 2.9814 16 8 3.5794 1.1831 1.5748 17 7 1.9607 0.8091 3.3998 18 6 1.1444 -0.0352 4.2756 19 6 1.8838 2.2680 3.5090 20 1 1.7717 2.7022 2.5157 21 6 0.6811 2.6535 4.3748 22 6 0.8726 2.0909 5.7850 23 7 2.1089 2.6306 6.3650 24 6 2.2544 2.2217 7.7684 25 6 3.2827 2.2336 5.5769 26 6 3.1631 2.8004 4.1603 27 1 3.1224 3.8887 4.2062 28 6 4.3755 2.3682 3.3332 29 1 -0.3633 0.5938 -0.8387 30 1 -0.3633 -1.0234 -0.0950 31 1 -0.3633 0.4293 0.9337 32 1 1.0485 1.3726 -3.4730 33 1 2.4159 -2.7376 0.9716 34 1 1.6240 -2.2851 2.5001 35 1 0.6905 -2.3002 0.9846 36 1 1.6798 -0.2167 5.2075 37 1 0.2018 0.4684 4.4902 38 1 0.9441 -0.9855 3.7807 39 1 0.6013 3.7394 4.4240 40 1 -0.2285 2.2406 3.9387 41 1 0.0247 2.3758 6.4079 42 1 0.9387 1.0040 5.7366 43 1 2.3566 1.1378 7.8224 44 1 3.1411 2.6918 8.1938 45 1 1.3736 2.5321 8.3305 46 1 4.1853 2.6221 6.0485 47 1 3.3373 1.1460 5.5294 48 1 4.4030 2.9373 2.4040 49 1 5.2875 2.5544 3.9004 50 1 4.2998 1.3049 3.1059 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407976164.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:42 Heat of formation + Delta-G solvation = -9.434668 kcal Electronic energy + Delta-G solvation = -30575.936472 eV Core-core repulsion = 26767.662144 eV Total energy + Delta-G solvation = -3808.274328 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.13643 -36.80883 -36.22042 -35.74112 -35.39550 -33.19978 -32.52002 -31.19894 -29.20919 -27.79798 -26.93809 -25.57859 -25.13971 -25.03231 -22.39538 -21.60976 -20.91339 -19.82257 -18.23893 -17.38586 -17.14728 -16.28850 -16.16134 -15.42858 -15.26097 -14.90569 -14.74027 -14.44268 -14.14085 -13.73394 -13.60757 -13.39160 -13.24777 -12.95137 -12.66536 -12.48084 -12.40408 -12.12043 -12.02442 -11.89729 -11.82944 -11.59682 -11.47767 -11.43971 -11.27113 -11.03348 -10.92117 -10.83988 -10.79609 -10.61112 -10.44572 -10.33106 -10.15956 -10.09265 -9.67228 -9.27833 -8.76354 -8.43849 -8.26217 -7.98619 -6.08693 -4.12709 1.18765 3.27905 3.35513 3.39095 3.46200 3.85035 4.05880 4.40576 4.62203 4.70497 4.84373 4.99979 5.01644 5.15530 5.23539 5.25740 5.33261 5.37648 5.38492 5.46583 5.51671 5.54473 5.64654 5.69331 5.70143 5.74669 5.77671 5.85209 6.00123 6.04446 6.09238 6.12629 6.22173 6.35469 6.42482 6.58957 6.65593 6.68626 6.74156 6.84472 6.97305 7.00664 7.01765 7.39666 7.63075 7.76816 7.96054 8.26481 8.89472 9.52340 10.99128 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.022328 B = 0.004028 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.750748 B = 6949.585621 C = 6969.250484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.268 3.732 3 H 0.065 0.935 4 C -0.522 4.522 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.888 5.888 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.993 5.993 13 C 0.106 3.894 14 S 2.783 3.217 15 O -0.999 6.999 16 O -0.965 6.965 17 N -1.008 6.008 18 C 0.087 3.913 19 C 0.160 3.840 20 H 0.092 0.908 21 C -0.116 4.116 22 C 0.016 3.984 23 N -0.542 5.542 24 C 0.026 3.974 25 C 0.060 3.940 26 C -0.106 4.106 27 H 0.092 0.908 28 C -0.136 4.136 29 H 0.076 0.924 30 H 0.035 0.965 31 H 0.014 0.986 32 H 0.263 0.737 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.023 0.977 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.072 0.928 47 H 0.039 0.961 48 H 0.089 0.911 49 H 0.047 0.953 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.843 2.064 17.340 17.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.166 3.834 3 H 0.083 0.917 4 C -0.562 4.562 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.835 5.835 13 C -0.040 4.040 14 S 2.795 3.205 15 O -0.983 6.983 16 O -0.949 6.949 17 N -0.847 5.847 18 C -0.058 4.058 19 C 0.054 3.946 20 H 0.110 0.890 21 C -0.154 4.154 22 C -0.111 4.111 23 N -0.267 5.267 24 C -0.122 4.122 25 C -0.068 4.068 26 C -0.127 4.127 27 H 0.110 0.890 28 C -0.194 4.194 29 H 0.095 0.905 30 H 0.054 0.946 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.041 0.959 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.090 0.910 47 H 0.057 0.943 48 H 0.107 0.893 49 H 0.066 0.934 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -1.997 2.739 17.192 17.523 hybrid contribution -0.176 -1.461 -0.846 1.697 sum -2.173 1.278 16.346 16.540 Atomic orbital electron populations 1.22045 0.98640 1.00120 0.99270 1.18728 0.90849 0.93389 0.80468 0.91727 1.21316 1.35882 1.08772 0.90200 0.92023 1.24905 0.95100 0.94746 0.98962 1.69919 1.42932 1.15807 1.23989 0.86531 0.78743 0.79805 0.82644 1.20694 1.21113 1.19824 1.57732 1.70224 1.19624 1.35944 1.21209 1.01752 0.82505 0.98556 1.02214 0.73245 0.72603 0.72465 1.93541 1.69053 1.60891 1.74782 1.93748 1.73144 1.54457 1.73542 1.58193 1.61135 1.13177 1.52175 1.21860 0.95943 0.93939 0.94086 1.20879 0.94755 0.79033 0.99961 0.89046 1.21758 0.97501 1.02110 0.94078 1.23053 0.92216 1.00296 0.95497 1.61912 1.02672 1.60108 1.01986 1.22319 1.02266 0.98223 0.89400 1.22160 0.92688 0.98487 0.93476 1.21699 0.95574 1.01463 0.93932 0.88989 1.22463 0.96329 1.00367 1.00246 0.90479 0.94566 0.96695 0.92727 0.93243 0.93484 0.90963 0.92963 0.89991 0.91956 0.89851 0.90469 0.91209 0.91007 0.95855 0.91577 0.91596 0.90996 0.94282 0.89260 0.93429 0.95575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.83 37.16 0.33 -2.76 16 2 C 0.27 6.48 2.49 -69.09 -0.17 6.31 16 3 H 0.07 1.74 6.89 -51.93 -0.36 1.38 16 4 C -0.52 -14.04 8.34 -34.44 -0.29 -14.33 16 5 H 0.06 1.66 7.52 -52.49 -0.39 1.27 16 6 C 0.07 1.78 5.28 -17.82 -0.09 1.69 16 7 N -0.89 -24.76 11.99 55.43 0.66 -24.10 16 8 Si 0.90 21.12 29.54 -169.99 -5.02 16.09 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.99 -20.64 3.12 -115.86 -0.36 -21.00 16 13 C 0.11 1.90 9.23 59.85 0.55 2.45 16 14 S 2.78 55.34 3.93 -107.50 -0.42 54.92 16 15 O -1.00 -21.41 16.64 -57.17 -0.95 -22.36 16 16 O -0.96 -21.62 11.31 -57.17 -0.65 -22.27 16 17 N -1.01 -15.41 2.64 -114.64 -0.30 -15.71 16 18 C 0.09 1.06 8.14 59.85 0.49 1.55 16 19 C 0.16 2.25 2.62 -67.81 -0.18 2.07 16 20 H 0.09 1.42 7.85 -51.94 -0.41 1.01 16 21 C -0.12 -1.27 5.11 -26.65 -0.14 -1.40 16 22 C 0.02 0.17 4.70 -3.84 -0.02 0.15 16 23 N -0.54 -6.00 4.91 -242.96 -1.19 -7.19 16 24 C 0.03 0.24 9.59 60.06 0.58 0.81 16 25 C 0.06 0.75 4.51 -3.83 -0.02 0.73 16 26 C -0.11 -1.46 2.71 -90.54 -0.25 -1.70 16 27 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 28 C -0.14 -2.20 7.48 37.15 0.28 -1.92 16 29 H 0.08 1.86 6.85 -51.93 -0.36 1.51 16 30 H 0.04 0.75 6.89 -51.92 -0.36 0.39 16 31 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.05 0.91 8.09 -51.93 -0.42 0.48 16 34 H 0.05 0.70 6.21 -51.93 -0.32 0.38 16 35 H 0.07 1.22 6.54 -51.93 -0.34 0.88 16 36 H 0.05 0.61 6.13 -51.93 -0.32 0.29 16 37 H 0.08 0.81 4.86 -51.93 -0.25 0.56 16 38 H 0.06 0.75 6.14 -51.93 -0.32 0.43 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.08 0.79 7.31 -51.93 -0.38 0.41 16 41 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 42 H 0.07 0.73 3.17 -52.15 -0.17 0.56 16 43 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 46 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 47 H 0.04 0.55 6.71 -51.93 -0.35 0.20 16 48 H 0.09 1.55 7.26 -51.93 -0.38 1.17 16 49 H 0.05 0.67 8.09 -51.93 -0.42 0.25 16 50 H 0.03 0.49 3.13 -25.33 -0.08 0.41 16 LS Contribution 367.44 15.07 5.54 5.54 Total: -1.00 -31.25 367.44 -9.75 -41.00 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -8.13 Total: 1.43 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: 1.07 Total: -6.35 kcal Atomic # 7 Polarization: -66.81 SS G_CDS: -1.19 Total: -68.01 kcal Atomic # 8 Polarization: -43.03 SS G_CDS: -1.60 Total: -44.63 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 55.34 SS G_CDS: -0.42 Total: 54.92 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.25 -9.75 -41.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407976164.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.570 kcal (2) G-P(sol) polarization free energy of solvation -31.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds