Wall clock time and date at job start Tue Mar 31 2020 17:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46805 * 2 1 4 4 C 1.50697 * 109.47196 * 240.00295 * 2 1 3 5 5 H 1.08001 * 120.00356 * 245.28838 * 4 2 1 6 6 C 1.37883 * 120.00087 * 65.28735 * 4 2 1 7 7 N 1.31509 * 119.99834 * 5.43376 * 6 4 2 8 8 Si 1.86803 * 119.99860 * 185.43131 * 6 4 2 9 9 H 1.48505 * 109.46963 * 94.99812 * 8 6 4 10 10 H 1.48504 * 109.47170 * 214.99482 * 8 6 4 11 11 H 1.48493 * 109.47442 * 335.00112 * 8 6 4 12 12 N 1.46490 * 109.47488 * 119.99983 * 2 1 3 13 13 C 1.46500 * 120.00110 * 60.00291 * 12 2 1 14 14 S 1.65603 * 120.00263 * 240.00294 * 12 2 1 15 15 O 1.42093 * 106.40369 * 203.53654 * 14 12 2 16 16 O 1.42098 * 106.39942 * 336.46047 * 14 12 2 17 17 N 1.65608 * 107.21621 * 89.99808 * 14 12 2 18 18 C 1.46498 * 119.99889 * 64.59662 * 17 14 12 19 19 C 1.46503 * 119.99603 * 244.59486 * 17 14 12 20 20 H 1.08987 * 109.52446 * 47.63100 * 19 17 14 21 21 C 1.53122 * 109.51692 * 167.75913 * 19 17 14 22 22 C 1.53033 * 109.27931 * 62.24951 * 21 19 17 23 23 N 1.46843 * 109.52587 * 59.18085 * 22 21 19 24 24 C 1.46898 * 111.00235 * 174.16035 * 23 22 21 25 25 C 1.46851 * 111.19809 * 298.25337 * 23 22 21 26 26 C 1.53048 * 109.51994 * 61.74049 * 25 23 22 27 27 H 1.09004 * 109.49865 * 60.76344 * 26 25 23 28 28 C 1.52994 * 109.50269 * 180.88029 * 26 25 23 29 29 H 1.09000 * 109.47146 * 54.70269 * 1 2 3 30 30 H 1.09007 * 109.46520 * 174.69646 * 1 2 3 31 31 H 1.08997 * 109.47181 * 294.69291 * 1 2 3 32 32 H 0.97008 * 120.00113 * 180.02562 * 7 6 4 33 33 H 1.08994 * 109.47466 * 89.99856 * 13 12 2 34 34 H 1.09002 * 109.47018 * 210.00427 * 13 12 2 35 35 H 1.09005 * 109.46831 * 329.99673 * 13 12 2 36 36 H 1.09000 * 109.47219 * 92.72933 * 18 17 14 37 37 H 1.09002 * 109.46759 * 212.72925 * 18 17 14 38 38 H 1.08996 * 109.47349 * 332.72774 * 18 17 14 39 39 H 1.09001 * 109.49947 * 182.19025 * 21 19 17 40 40 H 1.09001 * 109.50371 * 302.30558 * 21 19 17 41 41 H 1.09003 * 109.46087 * 179.19143 * 22 21 19 42 42 H 1.08998 * 109.46519 * 299.17208 * 22 21 19 43 43 H 1.08999 * 109.47371 * 63.94926 * 24 23 22 44 44 H 1.09002 * 109.47022 * 183.95035 * 24 23 22 45 45 H 1.08999 * 109.47223 * 303.94674 * 24 23 22 46 46 H 1.08993 * 109.46728 * 181.75372 * 25 23 22 47 47 H 1.08997 * 109.46332 * 301.73037 * 25 23 22 48 48 H 1.09002 * 109.47527 * 192.03334 * 28 26 25 49 49 H 1.09006 * 109.47619 * 312.03562 * 28 26 25 50 50 H 1.09002 * 109.47213 * 72.03224 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5810 -1.6356 -1.1338 6 6 1.7915 -0.1791 -2.4798 7 7 1.2183 0.9990 -2.5940 8 14 2.2796 -1.1327 -4.0102 9 1 1.1125 -1.9069 -4.5041 10 1 2.7261 -0.1849 -5.0626 11 1 3.3879 -2.0644 -3.6804 12 7 2.0184 -0.6905 1.1961 13 6 1.6646 -2.0931 1.4279 14 16 2.9705 0.1143 2.2862 15 8 3.7119 -0.8787 2.9814 16 8 3.5794 1.1831 1.5748 17 7 1.9607 0.8091 3.3998 18 6 1.1444 -0.0352 4.2756 19 6 1.8838 2.2680 3.5090 20 1 1.7717 2.7022 2.5157 21 6 0.6811 2.6535 4.3748 22 6 0.8726 2.0909 5.7850 23 7 2.1089 2.6306 6.3650 24 6 2.2544 2.2217 7.7684 25 6 3.2827 2.2336 5.5769 26 6 3.1631 2.8004 4.1603 27 1 3.1224 3.8887 4.2062 28 6 4.3755 2.3682 3.3332 29 1 -0.3633 0.5938 -0.8387 30 1 -0.3633 -1.0234 -0.0950 31 1 -0.3633 0.4293 0.9337 32 1 1.0485 1.3726 -3.4730 33 1 2.4159 -2.7376 0.9716 34 1 1.6240 -2.2851 2.5001 35 1 0.6905 -2.3002 0.9846 36 1 1.6798 -0.2167 5.2075 37 1 0.2018 0.4684 4.4902 38 1 0.9441 -0.9855 3.7807 39 1 0.6013 3.7394 4.4240 40 1 -0.2285 2.2406 3.9387 41 1 0.0247 2.3758 6.4079 42 1 0.9387 1.0040 5.7366 43 1 2.3566 1.1378 7.8224 44 1 3.1411 2.6918 8.1938 45 1 1.3736 2.5321 8.3305 46 1 4.1853 2.6221 6.0485 47 1 3.3373 1.1460 5.5294 48 1 4.4030 2.9373 2.4040 49 1 5.2875 2.5544 3.9004 50 1 4.2998 1.3049 3.1059 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407976164.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:42 Heat of formation + Delta-G solvation = -32.184682 kcal Electronic energy + Delta-G solvation = -30576.922986 eV Core-core repulsion = 26767.662144 eV Total energy + Delta-G solvation = -3809.260842 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.14035 -38.41332 -37.95250 -37.19734 -36.53896 -34.60769 -34.21962 -32.15936 -31.01152 -28.80853 -27.97941 -27.25063 -26.98756 -25.99372 -23.40190 -22.77493 -22.40416 -21.06136 -19.67638 -18.92627 -18.70916 -18.09052 -17.45890 -16.74987 -16.38641 -16.32136 -15.85792 -15.67215 -15.31906 -15.22600 -14.89479 -14.72239 -14.63383 -14.42042 -13.88873 -13.76996 -13.64378 -13.46048 -13.24166 -13.15786 -13.09644 -12.99602 -12.97176 -12.86368 -12.74360 -12.64302 -12.49966 -12.31740 -12.23327 -12.05459 -11.92299 -11.78279 -11.51985 -11.19037 -11.17024 -11.10692 -10.50769 -9.95637 -9.67063 -9.09288 -8.14702 -6.25566 -0.34167 1.40079 1.42233 1.51836 2.04255 2.41753 2.56793 3.02892 3.15534 3.44180 3.60298 3.67502 3.87319 3.94421 4.12831 4.21251 4.36491 4.36968 4.45708 4.48115 4.50818 4.60484 4.61704 4.66018 4.69353 4.72722 4.81299 4.83811 4.89742 4.94000 4.97509 5.00566 5.05637 5.07131 5.10645 5.13370 5.16249 5.26134 5.31387 5.35068 5.58303 5.62544 5.79467 5.86532 6.10384 6.13813 6.22290 6.27695 6.81953 7.42710 8.91890 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.022328 B = 0.004028 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.750748 B = 6949.585621 C = 6969.250484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.275 3.725 3 H 0.029 0.971 4 C -0.541 4.541 5 H 0.053 0.947 6 C 0.020 3.980 7 N -0.913 5.913 8 Si 0.952 3.048 9 H -0.268 1.268 10 H -0.284 1.284 11 H -0.275 1.275 12 N -1.002 6.002 13 C 0.099 3.901 14 S 2.793 3.207 15 O -1.019 7.019 16 O -1.000 7.000 17 N -0.999 5.999 18 C 0.076 3.924 19 C 0.153 3.847 20 H 0.068 0.932 21 C -0.108 4.108 22 C 0.015 3.985 23 N -0.547 5.547 24 C 0.025 3.975 25 C 0.066 3.934 26 C -0.103 4.103 27 H 0.105 0.895 28 C -0.137 4.137 29 H 0.051 0.949 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.265 0.735 33 H 0.037 0.963 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.062 0.938 37 H 0.112 0.888 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.022 0.978 44 H 0.070 0.930 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.022 0.978 48 H 0.067 0.933 49 H 0.064 0.936 50 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.420 1.786 19.385 19.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.171 3.829 3 H 0.047 0.953 4 C -0.581 4.581 5 H 0.071 0.929 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.777 3.223 9 H -0.193 1.193 10 H -0.210 1.210 11 H -0.200 1.200 12 N -0.843 5.843 13 C -0.046 4.046 14 S 2.805 3.195 15 O -1.003 7.003 16 O -0.985 6.985 17 N -0.840 5.840 18 C -0.068 4.068 19 C 0.047 3.953 20 H 0.086 0.914 21 C -0.147 4.147 22 C -0.111 4.111 23 N -0.271 5.271 24 C -0.122 4.122 25 C -0.062 4.062 26 C -0.124 4.124 27 H 0.123 0.877 28 C -0.196 4.196 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.080 0.920 37 H 0.130 0.870 38 H 0.084 0.916 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.092 0.908 43 H 0.041 0.959 44 H 0.088 0.912 45 H 0.101 0.899 46 H 0.097 0.903 47 H 0.041 0.959 48 H 0.086 0.914 49 H 0.083 0.917 50 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges -3.577 2.432 19.248 19.728 hybrid contribution 0.360 -1.336 -1.399 1.968 sum -3.217 1.096 17.848 18.169 Atomic orbital electron populations 1.21824 0.96732 1.00412 0.99636 1.18390 0.92122 0.91522 0.80906 0.95323 1.21640 1.35950 1.08698 0.91773 0.92877 1.25615 0.95226 0.95534 1.01606 1.70024 1.43740 1.16856 1.24583 0.85648 0.78671 0.78596 0.79362 1.19342 1.20983 1.19967 1.57640 1.70230 1.20881 1.35516 1.21414 1.01859 0.80730 1.00640 1.01677 0.73344 0.71898 0.72555 1.93503 1.70031 1.61762 1.74978 1.93710 1.74525 1.55435 1.74798 1.57804 1.60935 1.13977 1.51292 1.22211 0.96854 0.93945 0.93772 1.21033 0.96628 0.77941 0.99680 0.91397 1.21761 0.96091 1.02820 0.94051 1.23115 0.92582 1.00356 0.95096 1.61926 1.02216 1.60255 1.02748 1.22387 1.03368 0.98276 0.88211 1.22036 0.94036 0.97306 0.92863 1.21674 0.94102 1.02228 0.94360 0.87680 1.22396 0.98723 0.98273 1.00160 0.93046 0.93609 0.93855 0.92636 0.94425 0.90408 0.89853 0.92000 0.86997 0.91626 0.88931 0.89247 0.88926 0.90798 0.95897 0.91166 0.89911 0.90273 0.95926 0.91369 0.91747 0.98112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.49 8.83 71.98 0.64 -4.85 16 2 C 0.27 13.52 2.49 44.25 0.11 13.63 16 3 H 0.03 1.62 6.89 -2.39 -0.02 1.61 16 4 C -0.54 -29.67 8.34 25.60 0.21 -29.45 16 5 H 0.05 2.92 7.52 -2.91 -0.02 2.90 16 6 C 0.02 1.13 5.28 84.66 0.45 1.57 16 7 N -0.91 -51.90 11.99 21.45 0.26 -51.64 16 8 Si 0.95 43.64 29.54 68.60 2.03 45.67 16 9 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 12 N -1.00 -41.88 3.12 -520.46 -1.62 -43.50 16 13 C 0.10 3.46 9.23 127.77 1.18 4.64 16 14 S 2.79 113.04 3.93 -56.49 -0.22 112.82 16 15 O -1.02 -44.10 16.64 -128.00 -2.13 -46.23 16 16 O -1.00 -47.18 11.31 -128.00 -1.45 -48.63 16 17 N -1.00 -29.67 2.64 -516.62 -1.37 -31.04 16 18 C 0.08 1.66 8.14 127.77 1.04 2.70 16 19 C 0.15 4.18 2.62 45.07 0.12 4.30 16 20 H 0.07 2.17 7.85 -2.39 -0.02 2.15 16 21 C -0.11 -2.07 5.11 30.65 0.16 -1.92 16 22 C 0.02 0.25 4.70 86.33 0.41 0.66 16 23 N -0.55 -10.45 4.91 -922.60 -4.53 -14.98 16 24 C 0.03 0.38 9.59 127.69 1.22 1.60 16 25 C 0.07 1.54 4.51 86.33 0.39 1.93 16 26 C -0.10 -2.77 2.71 -10.74 -0.03 -2.80 16 27 H 0.11 2.52 8.14 -2.38 -0.02 2.51 16 28 C -0.14 -4.58 7.48 71.98 0.54 -4.04 16 29 H 0.05 2.49 6.85 -2.39 -0.02 2.48 16 30 H 0.04 1.85 6.89 -2.38 -0.02 1.84 16 31 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.26 14.26 8.31 -92.70 -0.77 13.49 16 33 H 0.04 1.37 8.09 -2.39 -0.02 1.35 16 34 H 0.08 2.20 6.21 -2.39 -0.01 2.18 16 35 H 0.08 2.69 6.54 -2.38 -0.02 2.67 16 36 H 0.06 1.27 6.13 -2.39 -0.01 1.26 16 37 H 0.11 1.79 4.86 -2.39 -0.01 1.78 16 38 H 0.07 1.40 6.14 -2.39 -0.01 1.38 16 39 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.09 1.52 7.31 -2.39 -0.02 1.50 16 41 H 0.09 1.19 8.09 -2.39 -0.02 1.17 16 42 H 0.07 1.22 3.17 -2.59 -0.01 1.21 16 43 H 0.02 0.35 8.14 -2.39 -0.02 0.33 16 44 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.08 0.97 8.10 -2.39 -0.02 0.95 16 46 H 0.08 1.72 8.12 -2.39 -0.02 1.70 16 47 H 0.02 0.60 6.71 -2.39 -0.02 0.59 16 48 H 0.07 2.51 7.26 -2.39 -0.02 2.50 16 49 H 0.06 1.84 8.09 -2.38 -0.02 1.82 16 50 H 0.00 0.02 3.13 -55.21 -0.17 -0.15 16 Total: -1.00 -69.33 367.44 -1.84 -71.18 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.76 Total: 18.36 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 6.43 Total: -12.01 kcal Atomic # 7 Polarization: -133.89 SS G_CDS: -7.26 Total: -141.16 kcal Atomic # 8 Polarization: -91.28 SS G_CDS: -3.58 Total: -94.86 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: 113.04 SS G_CDS: -0.22 Total: 112.82 kcal Total: -69.33 -1.84 -71.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407976164.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.992 kcal (2) G-P(sol) polarization free energy of solvation -69.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds