Wall clock time and date at job start Tue Mar 31 2020 17:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47274 * 2 1 4 4 N 1.46909 * 109.46652 * 119.99518 * 2 1 3 5 5 C 1.46841 * 110.99792 * 55.79287 * 4 2 1 6 6 C 1.53048 * 109.52124 * 185.83686 * 5 4 2 7 7 C 1.53120 * 109.30984 * 300.84217 * 6 5 4 8 8 C 1.53119 * 109.15826 * 57.59123 * 7 6 5 9 9 H 1.09001 * 109.50205 * 62.36865 * 8 7 6 10 10 N 1.46505 * 109.49899 * 182.44651 * 8 7 6 11 11 S 1.65602 * 119.99610 * 264.23220 * 10 8 7 12 12 O 1.42104 * 106.40105 * 183.67651 * 11 10 8 13 13 O 1.42102 * 106.40166 * 50.76176 * 11 10 8 14 14 N 1.65595 * 107.22097 * 297.21586 * 11 10 8 15 15 C 1.46503 * 120.00011 * 95.97457 * 14 11 10 16 16 C 1.46498 * 120.00560 * 275.97074 * 14 11 10 17 17 H 1.09002 * 109.46780 * 359.74666 * 16 14 11 18 18 C 1.52998 * 109.47563 * 239.74699 * 16 14 11 19 19 C 1.50698 * 109.47068 * 119.74082 * 16 14 11 20 20 H 1.07994 * 120.00163 * 4.90208 * 19 16 14 21 21 C 1.37886 * 119.99628 * 184.89593 * 19 16 14 22 22 N 1.31506 * 120.00134 * 0.02562 * 21 19 16 23 23 Si 1.86796 * 119.99440 * 180.02562 * 21 19 16 24 24 H 1.48496 * 109.47666 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47091 * 120.00461 * 23 21 19 26 26 H 1.48507 * 109.47065 * 240.00059 * 23 21 19 27 27 C 1.46847 * 110.99785 * 179.97438 * 4 2 1 28 28 H 1.09001 * 109.47029 * 300.00408 * 1 2 3 29 29 H 1.09005 * 109.46734 * 60.00201 * 1 2 3 30 30 H 1.09002 * 109.47310 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47466 * 239.99533 * 2 1 3 32 32 H 1.09005 * 109.47076 * 299.99590 * 3 2 1 33 33 H 1.09005 * 109.47807 * 59.99515 * 3 2 1 34 34 H 1.09001 * 109.47558 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.46304 * 305.85064 * 5 4 2 36 36 H 1.09000 * 109.46588 * 65.82203 * 5 4 2 37 37 H 1.08996 * 109.49885 * 60.76028 * 6 5 4 38 38 H 1.08994 * 109.50168 * 180.83946 * 6 5 4 39 39 H 1.09001 * 109.49101 * 297.70982 * 7 6 5 40 40 H 1.09001 * 109.55817 * 177.51979 * 7 6 5 41 41 H 0.96992 * 120.00216 * 84.23956 * 10 8 7 42 42 H 1.08994 * 109.47292 * 89.99457 * 15 14 11 43 43 H 1.09006 * 109.46577 * 329.99816 * 15 14 11 44 44 H 1.08997 * 109.47206 * 210.00293 * 15 14 11 45 45 H 1.08998 * 109.47266 * 179.97438 * 18 16 14 46 46 H 1.09002 * 109.47046 * 299.99804 * 18 16 14 47 47 H 1.08999 * 109.46955 * 59.99523 * 18 16 14 48 48 H 0.97001 * 119.99846 * 179.97438 * 22 21 19 49 49 H 1.09003 * 109.46325 * 54.14325 * 27 4 2 50 50 H 1.08998 * 109.46352 * 294.17669 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6925 1.1996 5 6 1.4683 -2.0508 1.2849 6 6 1.8809 -2.6876 2.6140 7 6 3.4090 -2.7303 2.7022 8 6 3.9604 -1.3089 2.5610 9 1 3.5986 -0.6947 3.3856 10 7 5.4247 -1.3477 2.5858 11 16 6.2362 -1.0776 4.0039 12 8 7.6206 -1.0963 3.6838 13 8 5.6506 -1.9380 4.9714 14 7 5.8875 0.4692 4.4813 15 6 4.8150 0.7129 5.4492 16 6 6.6514 1.5940 3.9361 17 1 7.4032 1.2197 3.2412 18 6 7.3407 2.3438 5.0778 19 6 5.7191 2.5300 3.2110 20 1 4.6541 2.3519 3.2283 21 6 6.2259 3.6138 2.5257 22 7 7.5228 3.8304 2.5043 23 14 5.0701 4.7744 1.6276 24 1 3.6696 4.3131 1.8040 25 1 5.2142 6.1442 2.1827 26 1 5.4076 4.7882 0.1815 27 6 3.4875 -0.7126 1.2333 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 3.1300 1.4425 0.0005 35 1 0.3808 -2.0057 1.2259 36 1 1.8520 -2.6510 0.4600 37 1 1.4858 -2.0955 3.4394 38 1 1.4841 -3.7012 2.6705 39 1 3.8022 -3.3549 1.9000 40 1 3.7075 -3.1429 3.6659 41 1 5.9188 -1.5314 1.7717 42 1 5.2244 0.6879 6.4590 43 1 4.0516 -0.0585 5.3473 44 1 4.3711 1.6904 5.2611 45 1 7.9094 3.1804 4.6720 46 1 6.5889 2.7181 5.7727 47 1 8.0150 1.6667 5.6022 48 1 7.8793 4.5927 2.0218 49 1 3.8670 0.3047 1.1367 50 1 3.8614 -1.3194 0.4086 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407976529.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:02 Heat of formation + Delta-G solvation = -80.004295 kcal Electronic energy + Delta-G solvation = -29847.707803 eV Core-core repulsion = 26036.373346 eV Total energy + Delta-G solvation = -3811.334456 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.48440 -36.67129 -36.15691 -35.83662 -35.21166 -33.32998 -32.57445 -30.63731 -29.14415 -29.06362 -26.90566 -25.48364 -25.15878 -24.18104 -22.44294 -20.81821 -20.39765 -19.91719 -18.71832 -17.16975 -16.84594 -16.58949 -16.28640 -15.64878 -15.01903 -14.93346 -14.67456 -14.32572 -13.84918 -13.79040 -13.44424 -13.41707 -13.20257 -13.00830 -12.71510 -12.35499 -12.16499 -11.98028 -11.81403 -11.69077 -11.60102 -11.48492 -11.46593 -11.35286 -11.20623 -11.18081 -11.10933 -10.99481 -10.85217 -10.70334 -10.47564 -10.38359 -10.28013 -10.23574 -10.05157 -9.31522 -9.07186 -8.50213 -8.29078 -7.95075 -6.10606 -4.17536 1.29639 3.22050 3.31382 3.33491 3.43592 3.91778 4.18225 4.35110 4.80242 4.83592 4.86925 4.96925 5.04867 5.08897 5.21453 5.24122 5.29990 5.37953 5.49993 5.52075 5.63545 5.67765 5.69557 5.78914 5.83201 5.90825 5.92930 5.94087 6.06144 6.11354 6.19391 6.20968 6.33277 6.34500 6.45792 6.50428 6.67431 6.86100 6.86998 7.09785 7.11598 7.15962 7.29625 7.52809 7.62622 7.77639 8.00670 8.25290 8.86807 9.48549 10.95778 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009358 B = 0.006425 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2991.506645 B = 4356.678714 C = 6679.358680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.080 3.920 3 C -0.151 4.151 4 N -0.529 5.529 5 C 0.049 3.951 6 C -0.114 4.114 7 C -0.140 4.140 8 C 0.168 3.832 9 H 0.092 0.908 10 N -1.123 6.123 11 S 2.783 3.217 12 O -0.985 6.985 13 O -0.998 6.998 14 N -0.990 5.990 15 C 0.105 3.895 16 C 0.269 3.731 17 H 0.058 0.942 18 C -0.141 4.141 19 C -0.521 4.521 20 H 0.065 0.935 21 C 0.065 3.935 22 N -0.887 5.887 23 Si 0.890 3.110 24 H -0.270 1.270 25 H -0.285 1.285 26 H -0.285 1.285 27 C 0.047 3.953 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.037 0.963 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.029 0.971 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.410 0.590 42 H 0.042 0.958 43 H 0.052 0.948 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.033 0.967 47 H 0.014 0.986 48 H 0.262 0.738 49 H 0.098 0.902 50 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.393 -9.133 -3.555 15.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.028 4.028 3 C -0.209 4.209 4 N -0.255 5.255 5 C -0.078 4.078 6 C -0.152 4.152 7 C -0.180 4.180 8 C 0.060 3.940 9 H 0.110 0.890 10 N -0.880 5.880 11 S 2.792 3.208 12 O -0.969 6.969 13 O -0.981 6.981 14 N -0.832 5.832 15 C -0.042 4.042 16 C 0.167 3.833 17 H 0.075 0.925 18 C -0.201 4.201 19 C -0.561 4.561 20 H 0.083 0.917 21 C -0.138 4.138 22 N -0.526 5.526 23 Si 0.718 3.282 24 H -0.194 1.194 25 H -0.211 1.211 26 H -0.211 1.211 27 C -0.082 4.082 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.048 0.952 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.243 0.757 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.098 0.902 45 H 0.102 0.898 46 H 0.052 0.948 47 H 0.033 0.967 48 H 0.072 0.928 49 H 0.116 0.884 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -11.949 -9.332 -2.586 15.380 hybrid contribution -0.257 0.552 -1.876 1.972 sum -12.205 -8.780 -4.462 15.684 Atomic orbital electron populations 1.21923 0.94512 1.01666 1.02278 1.21570 0.95368 0.95351 0.90512 1.21937 1.01973 0.94761 1.02202 1.61894 1.07735 1.16715 1.39205 1.22214 1.00021 0.88615 0.96999 1.21546 0.95587 1.00338 0.97755 1.22173 0.95419 0.97283 1.03120 1.20536 0.78695 0.95809 0.98994 0.88991 1.56085 1.14679 1.88319 1.28872 1.01786 0.72916 0.73197 0.72888 1.93592 1.31517 1.87230 1.84556 1.93537 1.79378 1.65315 1.59865 1.57689 1.46438 1.24490 1.54616 1.21233 0.89146 1.02502 0.91285 1.18688 0.90251 0.82749 0.91661 0.92471 1.22004 0.99032 1.00979 0.98057 1.21407 0.93771 1.09508 1.31384 0.91660 1.24919 0.95008 0.97594 0.96277 1.69923 1.11159 1.29267 1.42219 0.86568 0.81316 0.80899 0.79426 1.19398 1.21104 1.21114 1.22445 0.87126 1.02679 0.95943 0.91597 0.92397 0.92675 0.94551 0.92529 0.91412 0.91810 0.90313 0.95243 0.90789 0.91411 0.92026 0.90333 0.75748 0.93973 0.92958 0.90202 0.89815 0.94754 0.96699 0.92756 0.88397 0.94778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.84 37.16 0.33 -1.05 16 2 C 0.08 0.92 2.68 -67.71 -0.18 0.73 16 3 C -0.15 -1.94 8.97 37.15 0.33 -1.60 16 4 N -0.53 -6.56 4.53 -226.69 -1.03 -7.59 16 5 C 0.05 0.52 5.13 -3.83 -0.02 0.50 16 6 C -0.11 -1.21 6.09 -26.64 -0.16 -1.37 16 7 C -0.14 -1.78 5.61 -26.61 -0.15 -1.93 16 8 C 0.17 2.43 2.88 -67.85 -0.20 2.24 16 9 H 0.09 1.43 6.72 -51.93 -0.35 1.08 16 10 N -1.12 -17.93 5.53 -4.82 -0.03 -17.95 16 11 S 2.78 54.31 5.96 -107.50 -0.64 53.66 16 12 O -0.98 -22.48 16.90 -57.17 -0.97 -23.45 16 13 O -1.00 -20.12 16.45 -57.17 -0.94 -21.06 16 14 N -0.99 -20.19 3.12 -115.85 -0.36 -20.55 16 15 C 0.10 1.85 9.05 59.85 0.54 2.40 16 16 C 0.27 6.44 2.51 -69.09 -0.17 6.27 16 17 H 0.06 1.53 7.08 -51.93 -0.37 1.16 16 18 C -0.14 -3.31 9.01 37.16 0.33 -2.98 16 19 C -0.52 -12.92 8.02 -34.44 -0.28 -13.20 16 20 H 0.07 1.58 7.17 -52.49 -0.38 1.20 16 21 C 0.06 1.66 5.32 -17.82 -0.09 1.57 16 22 N -0.89 -24.13 11.69 55.43 0.65 -23.48 16 23 Si 0.89 19.94 29.54 -169.99 -5.02 14.92 16 24 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 C 0.05 0.65 4.75 -3.83 -0.02 0.63 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.46 6.21 -51.93 -0.32 0.14 16 31 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.91 6.28 -51.93 -0.33 0.59 16 35 H 0.08 0.73 5.90 -51.93 -0.31 0.42 16 36 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 1.09 7.77 -51.93 -0.40 0.69 16 41 H 0.41 5.88 8.84 -34.47 -0.30 5.58 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.05 0.82 6.63 -51.93 -0.34 0.48 16 44 H 0.08 1.43 6.95 -51.93 -0.36 1.07 16 45 H 0.08 2.14 6.47 -51.93 -0.34 1.80 16 46 H 0.03 0.75 7.66 -51.93 -0.40 0.35 16 47 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 48 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 49 H 0.10 1.54 6.01 -51.93 -0.31 1.23 16 50 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 389.63 15.07 5.87 5.87 Total: -1.00 -29.80 389.63 -10.91 -40.71 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -8.72 Total: 6.72 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 0.27 Total: -7.80 kcal Atomic # 7 Polarization: -68.80 SS G_CDS: -0.77 Total: -69.57 kcal Atomic # 8 Polarization: -42.61 SS G_CDS: -1.91 Total: -44.51 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Atomic # 16 Polarization: 54.31 SS G_CDS: -0.64 Total: 53.66 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.80 -10.91 -40.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407976529.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.293 kcal (2) G-P(sol) polarization free energy of solvation -29.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds