Wall clock time and date at job start Tue Mar 31 2020 17:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47274 * 2 1 4 4 N 1.46909 * 109.46652 * 119.99518 * 2 1 3 5 5 C 1.46841 * 110.99792 * 55.79287 * 4 2 1 6 6 C 1.53048 * 109.52124 * 185.83686 * 5 4 2 7 7 C 1.53120 * 109.30984 * 300.84217 * 6 5 4 8 8 C 1.53119 * 109.15826 * 57.59123 * 7 6 5 9 9 H 1.09001 * 109.50205 * 62.36865 * 8 7 6 10 10 N 1.46505 * 109.49899 * 182.44651 * 8 7 6 11 11 S 1.65602 * 119.99610 * 264.23220 * 10 8 7 12 12 O 1.42104 * 106.40105 * 183.67651 * 11 10 8 13 13 O 1.42102 * 106.40166 * 50.76176 * 11 10 8 14 14 N 1.65595 * 107.22097 * 297.21586 * 11 10 8 15 15 C 1.46503 * 120.00011 * 95.97457 * 14 11 10 16 16 C 1.46498 * 120.00560 * 275.97074 * 14 11 10 17 17 H 1.09002 * 109.46780 * 359.74666 * 16 14 11 18 18 C 1.52998 * 109.47563 * 239.74699 * 16 14 11 19 19 C 1.50698 * 109.47068 * 119.74082 * 16 14 11 20 20 H 1.07994 * 120.00163 * 4.90208 * 19 16 14 21 21 C 1.37886 * 119.99628 * 184.89593 * 19 16 14 22 22 N 1.31506 * 120.00134 * 0.02562 * 21 19 16 23 23 Si 1.86796 * 119.99440 * 180.02562 * 21 19 16 24 24 H 1.48496 * 109.47666 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47091 * 120.00461 * 23 21 19 26 26 H 1.48507 * 109.47065 * 240.00059 * 23 21 19 27 27 C 1.46847 * 110.99785 * 179.97438 * 4 2 1 28 28 H 1.09001 * 109.47029 * 300.00408 * 1 2 3 29 29 H 1.09005 * 109.46734 * 60.00201 * 1 2 3 30 30 H 1.09002 * 109.47310 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47466 * 239.99533 * 2 1 3 32 32 H 1.09005 * 109.47076 * 299.99590 * 3 2 1 33 33 H 1.09005 * 109.47807 * 59.99515 * 3 2 1 34 34 H 1.09001 * 109.47558 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.46304 * 305.85064 * 5 4 2 36 36 H 1.09000 * 109.46588 * 65.82203 * 5 4 2 37 37 H 1.08996 * 109.49885 * 60.76028 * 6 5 4 38 38 H 1.08994 * 109.50168 * 180.83946 * 6 5 4 39 39 H 1.09001 * 109.49101 * 297.70982 * 7 6 5 40 40 H 1.09001 * 109.55817 * 177.51979 * 7 6 5 41 41 H 0.96992 * 120.00216 * 84.23956 * 10 8 7 42 42 H 1.08994 * 109.47292 * 89.99457 * 15 14 11 43 43 H 1.09006 * 109.46577 * 329.99816 * 15 14 11 44 44 H 1.08997 * 109.47206 * 210.00293 * 15 14 11 45 45 H 1.08998 * 109.47266 * 179.97438 * 18 16 14 46 46 H 1.09002 * 109.47046 * 299.99804 * 18 16 14 47 47 H 1.08999 * 109.46955 * 59.99523 * 18 16 14 48 48 H 0.97001 * 119.99846 * 179.97438 * 22 21 19 49 49 H 1.09003 * 109.46325 * 54.14325 * 27 4 2 50 50 H 1.08998 * 109.46352 * 294.17669 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6925 1.1996 5 6 1.4683 -2.0508 1.2849 6 6 1.8809 -2.6876 2.6140 7 6 3.4090 -2.7303 2.7022 8 6 3.9604 -1.3089 2.5610 9 1 3.5986 -0.6947 3.3856 10 7 5.4247 -1.3477 2.5858 11 16 6.2362 -1.0776 4.0039 12 8 7.6206 -1.0963 3.6838 13 8 5.6506 -1.9380 4.9714 14 7 5.8875 0.4692 4.4813 15 6 4.8150 0.7129 5.4492 16 6 6.6514 1.5940 3.9361 17 1 7.4032 1.2197 3.2412 18 6 7.3407 2.3438 5.0778 19 6 5.7191 2.5300 3.2110 20 1 4.6541 2.3519 3.2283 21 6 6.2259 3.6138 2.5257 22 7 7.5228 3.8304 2.5043 23 14 5.0701 4.7744 1.6276 24 1 3.6696 4.3131 1.8040 25 1 5.2142 6.1442 2.1827 26 1 5.4076 4.7882 0.1815 27 6 3.4875 -0.7126 1.2333 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 3.1300 1.4425 0.0005 35 1 0.3808 -2.0057 1.2259 36 1 1.8520 -2.6510 0.4600 37 1 1.4858 -2.0955 3.4394 38 1 1.4841 -3.7012 2.6705 39 1 3.8022 -3.3549 1.9000 40 1 3.7075 -3.1429 3.6659 41 1 5.9188 -1.5314 1.7717 42 1 5.2244 0.6879 6.4590 43 1 4.0516 -0.0585 5.3473 44 1 4.3711 1.6904 5.2611 45 1 7.9094 3.1804 4.6720 46 1 6.5889 2.7181 5.7727 47 1 8.0150 1.6667 5.6022 48 1 7.8793 4.5927 2.0218 49 1 3.8670 0.3047 1.1367 50 1 3.8614 -1.3194 0.4086 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407976529.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:01 Heat of formation + Delta-G solvation = -101.318072 kcal Electronic energy + Delta-G solvation = -29848.632037 eV Core-core repulsion = 26036.373346 eV Total energy + Delta-G solvation = -3812.258691 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.47185 -38.31500 -37.88425 -36.97161 -36.88053 -34.47423 -34.37947 -31.56674 -30.96609 -30.16740 -27.82622 -27.21630 -26.98664 -25.15147 -23.46012 -22.63071 -21.37099 -20.99358 -20.16511 -18.75541 -18.38100 -18.24240 -17.65712 -17.12268 -16.58528 -15.95115 -15.82881 -15.69692 -15.15915 -14.94031 -14.82704 -14.70429 -14.47776 -14.39968 -13.95703 -13.73354 -13.49330 -13.40215 -13.20894 -13.15215 -13.08508 -12.95691 -12.79478 -12.67664 -12.66763 -12.64318 -12.43962 -12.23479 -12.19344 -12.13927 -12.04150 -11.89041 -11.62714 -11.46909 -11.22536 -11.12448 -10.50334 -10.36508 -9.65579 -9.22295 -8.08465 -6.20909 -0.27519 1.42943 1.47162 1.57139 1.96249 2.46532 2.61614 2.95709 3.22101 3.48093 3.75159 3.83065 3.96114 4.06312 4.11020 4.14617 4.28203 4.39056 4.44170 4.49376 4.63570 4.70932 4.72845 4.76353 4.79758 4.82001 4.91283 4.95127 4.98409 5.01106 5.03764 5.07167 5.09593 5.15646 5.18456 5.26133 5.32866 5.37606 5.43481 5.49427 5.61096 5.67692 5.85401 6.02796 6.11657 6.21544 6.27193 6.30327 6.89266 7.48433 8.97839 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009358 B = 0.006425 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2991.506645 B = 4356.678714 C = 6679.358680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.080 3.920 3 C -0.151 4.151 4 N -0.539 5.539 5 C 0.050 3.950 6 C -0.110 4.110 7 C -0.137 4.137 8 C 0.163 3.837 9 H 0.081 0.919 10 N -1.114 6.114 11 S 2.798 3.202 12 O -1.021 7.021 13 O -1.002 7.002 14 N -0.995 5.995 15 C 0.099 3.901 16 C 0.275 3.725 17 H 0.024 0.976 18 C -0.135 4.135 19 C -0.518 4.518 20 H 0.070 0.930 21 C 0.019 3.981 22 N -0.921 5.921 23 Si 0.949 3.051 24 H -0.258 1.258 25 H -0.287 1.287 26 H -0.286 1.286 27 C 0.054 3.946 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.041 0.959 35 H 0.097 0.903 36 H 0.036 0.964 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.418 0.582 42 H 0.052 0.948 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.047 0.953 47 H 0.020 0.980 48 H 0.262 0.738 49 H 0.073 0.927 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.133 -10.077 -4.162 18.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.028 4.028 3 C -0.209 4.209 4 N -0.266 5.266 5 C -0.078 4.078 6 C -0.148 4.148 7 C -0.177 4.177 8 C 0.056 3.944 9 H 0.099 0.901 10 N -0.875 5.875 11 S 2.807 3.193 12 O -1.005 7.005 13 O -0.985 6.985 14 N -0.837 5.837 15 C -0.046 4.046 16 C 0.171 3.829 17 H 0.041 0.959 18 C -0.195 4.195 19 C -0.557 4.557 20 H 0.088 0.912 21 C -0.181 4.181 22 N -0.560 5.560 23 Si 0.775 3.225 24 H -0.181 1.181 25 H -0.213 1.213 26 H -0.212 1.212 27 C -0.076 4.076 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.115 0.885 36 H 0.054 0.946 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.252 0.748 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.079 0.921 46 H 0.066 0.934 47 H 0.039 0.961 48 H 0.071 0.929 49 H 0.091 0.909 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -14.713 -10.289 -3.178 18.233 hybrid contribution 0.576 0.793 -1.681 1.946 sum -14.137 -9.496 -4.859 17.710 Atomic orbital electron populations 1.21877 0.92619 1.02689 1.02555 1.21615 0.96776 0.94165 0.90273 1.21933 1.00568 0.96123 1.02226 1.61902 1.06540 1.18175 1.39935 1.22295 1.01008 0.87454 0.97002 1.21557 0.93772 1.01728 0.97748 1.22139 0.97058 0.95673 1.02784 1.20717 0.77360 0.97236 0.99136 0.90094 1.55796 1.15608 1.87906 1.28164 1.01178 0.72087 0.72797 0.73209 1.93540 1.34208 1.87606 1.85189 1.93526 1.79251 1.65168 1.60581 1.57580 1.46942 1.23764 1.55430 1.21413 0.88904 1.03151 0.91138 1.18366 0.89862 0.83418 0.91263 0.95854 1.21898 0.99208 1.00268 0.98111 1.21596 0.94005 1.09288 1.30832 0.91172 1.25620 0.96139 0.99155 0.97166 1.70051 1.12790 1.29896 1.43288 0.85642 0.80107 0.78750 0.78020 1.18146 1.21302 1.21239 1.22263 0.88468 1.01193 0.95628 0.92276 0.91196 0.91248 0.94095 0.91025 0.92826 0.93953 0.88478 0.94592 0.91271 0.89049 0.91028 0.91592 0.74785 0.92897 0.90918 0.90428 0.92105 0.93420 0.96129 0.92905 0.90894 0.94015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 8.84 71.98 0.64 -1.58 16 2 C 0.08 1.65 2.68 44.91 0.12 1.77 16 3 C -0.15 -3.71 8.97 71.98 0.65 -3.06 16 4 N -0.54 -12.30 4.53 -871.11 -3.94 -16.25 16 5 C 0.05 0.88 5.13 86.33 0.44 1.33 16 6 C -0.11 -2.02 6.09 30.65 0.19 -1.83 16 7 C -0.14 -3.20 5.61 30.67 0.17 -3.03 16 8 C 0.16 4.56 2.88 45.04 0.13 4.69 16 9 H 0.08 2.45 6.72 -2.39 -0.02 2.43 16 10 N -1.11 -35.35 5.53 -169.16 -0.93 -36.28 16 11 S 2.80 109.40 5.96 -56.49 -0.34 109.06 16 12 O -1.02 -47.60 16.90 -128.00 -2.16 -49.77 16 13 O -1.00 -39.65 16.45 -128.00 -2.11 -41.76 16 14 N -1.00 -40.60 3.12 -520.45 -1.62 -42.22 16 15 C 0.10 3.42 9.05 127.77 1.16 4.57 16 16 C 0.28 13.39 2.51 44.24 0.11 13.50 16 17 H 0.02 1.31 7.08 -2.39 -0.02 1.29 16 18 C -0.14 -6.44 9.01 71.98 0.65 -5.79 16 19 C -0.52 -25.83 8.02 25.60 0.21 -25.62 16 20 H 0.07 3.37 7.17 -2.91 -0.02 3.35 16 21 C 0.02 0.97 5.32 84.66 0.45 1.42 16 22 N -0.92 -51.13 11.69 21.45 0.25 -50.88 16 23 Si 0.95 41.06 29.54 68.60 2.03 43.09 16 24 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 25 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 26 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 27 C 0.05 1.44 4.75 86.33 0.41 1.85 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.07 0.91 6.21 -2.39 -0.01 0.89 16 31 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.04 1.20 6.28 -2.39 -0.01 1.19 16 35 H 0.10 1.41 5.90 -2.39 -0.01 1.40 16 36 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.07 1.72 7.77 -2.39 -0.02 1.70 16 41 H 0.42 11.98 8.84 -96.75 -0.86 11.13 16 42 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.07 2.18 6.63 -2.38 -0.02 2.16 16 44 H 0.08 2.69 6.95 -2.39 -0.02 2.68 16 45 H 0.06 3.18 6.47 -2.39 -0.02 3.16 16 46 H 0.05 2.08 7.66 -2.39 -0.02 2.06 16 47 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 49 H 0.07 2.31 6.01 -2.39 -0.01 2.30 16 50 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -63.81 389.63 -3.45 -67.26 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: 0.06 Total: 29.53 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: 5.32 Total: -11.79 kcal Atomic # 7 Polarization: -139.37 SS G_CDS: -6.25 Total: -145.63 kcal Atomic # 8 Polarization: -87.26 SS G_CDS: -4.27 Total: -91.53 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Atomic # 16 Polarization: 109.40 SS G_CDS: -0.34 Total: 109.06 kcal Total: -63.81 -3.45 -67.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407976529.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.057 kcal (2) G-P(sol) polarization free energy of solvation -63.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds