Wall clock time and date at job start Tue Mar 31 2020 17:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47084 * 2 1 4 4 N 1.46895 * 109.47405 * 120.00178 * 2 1 3 5 5 C 1.46843 * 110.99970 * 299.21070 * 4 2 1 6 6 C 1.53042 * 109.52278 * 174.15687 * 5 4 2 7 7 C 1.53127 * 109.27596 * 59.17923 * 6 5 4 8 8 C 1.53123 * 109.15019 * 302.34079 * 7 6 5 9 9 H 1.08997 * 109.51083 * 297.71779 * 8 7 6 10 10 N 1.46509 * 109.49131 * 177.60657 * 8 7 6 11 11 S 1.65597 * 120.00097 * 95.19980 * 10 8 7 12 12 O 1.42092 * 106.40393 * 178.53814 * 11 10 8 13 13 O 1.42101 * 106.40147 * 311.46260 * 11 10 8 14 14 N 1.65597 * 107.21616 * 64.99833 * 11 10 8 15 15 C 1.46499 * 120.00170 * 89.99937 * 14 11 10 16 16 C 1.46504 * 120.00478 * 270.00090 * 14 11 10 17 17 H 1.09007 * 109.46588 * 0.02562 * 16 14 11 18 18 C 1.53002 * 109.47243 * 240.00124 * 16 14 11 19 19 C 1.50693 * 109.47466 * 119.99932 * 16 14 11 20 20 H 1.08007 * 120.00043 * 359.97438 * 19 16 14 21 21 C 1.37879 * 120.00057 * 180.02562 * 19 16 14 22 22 N 1.31512 * 119.99985 * 359.97438 * 21 19 16 23 23 Si 1.86801 * 119.99930 * 180.02562 * 21 19 16 24 24 H 1.48503 * 109.47229 * 359.97438 * 23 21 19 25 25 H 1.48491 * 109.47059 * 119.99779 * 23 21 19 26 26 H 1.48493 * 109.47193 * 240.00050 * 23 21 19 27 27 C 1.46847 * 110.99982 * 174.99705 * 4 2 1 28 28 H 1.09001 * 109.47145 * 299.99361 * 1 2 3 29 29 H 1.08998 * 109.47692 * 59.99346 * 1 2 3 30 30 H 1.09006 * 109.47147 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47145 * 240.00639 * 2 1 3 32 32 H 1.09001 * 109.46608 * 60.00310 * 3 2 1 33 33 H 1.08999 * 109.46866 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47389 * 300.00839 * 3 2 1 35 35 H 1.08993 * 109.46313 * 294.17341 * 5 4 2 36 36 H 1.09004 * 109.46429 * 54.14692 * 5 4 2 37 37 H 1.08997 * 109.50758 * 179.11703 * 6 5 4 38 38 H 1.08998 * 109.50897 * 299.20258 * 6 5 4 39 39 H 1.09003 * 109.52393 * 62.24889 * 7 6 5 40 40 H 1.08997 * 109.52177 * 182.37978 * 7 6 5 41 41 H 0.96996 * 119.99337 * 275.20494 * 10 8 7 42 42 H 1.09000 * 109.47191 * 89.99568 * 15 14 11 43 43 H 1.08992 * 109.47519 * 209.99827 * 15 14 11 44 44 H 1.09003 * 109.46823 * 330.00443 * 15 14 11 45 45 H 1.09006 * 109.47022 * 59.99507 * 18 16 14 46 46 H 1.09001 * 109.47012 * 179.97438 * 18 16 14 47 47 H 1.08997 * 109.47165 * 299.99586 * 18 16 14 48 48 H 0.97006 * 119.99677 * 179.97438 * 22 21 19 49 49 H 1.09002 * 109.46481 * 305.85957 * 27 4 2 50 50 H 1.08994 * 109.46283 * 65.83811 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.5643 -0.0159 2.4205 6 6 1.9681 -0.8420 3.6438 7 6 3.4907 -1.0033 3.6647 8 6 3.9435 -1.6666 2.3610 9 1 3.5052 -2.6619 2.2876 10 7 5.4047 -1.7727 2.3483 11 16 6.1377 -3.1717 2.8463 12 8 7.5351 -2.9722 2.6842 13 8 5.5408 -3.5172 4.0887 14 7 5.7074 -4.3587 1.7747 15 6 6.5294 -4.6071 0.5878 16 6 4.5047 -5.1604 2.0136 17 1 4.0274 -4.8330 2.9373 18 6 4.8909 -6.6360 2.1337 19 6 3.5467 -4.9840 0.8639 20 1 3.8074 -4.3387 0.0379 21 6 2.3369 -5.6454 0.8668 22 7 2.0192 -6.4307 1.8727 23 14 1.1497 -5.4271 -0.5588 24 1 1.7396 -4.4988 -1.5567 25 1 0.8950 -6.7436 -1.1968 26 1 -0.1294 -4.8649 -0.0561 27 6 3.4827 -0.8165 1.1749 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1299 1.4425 -0.0005 34 1 1.6765 1.9564 -0.8899 35 1 2.0229 0.9711 2.4813 36 1 0.4796 0.0887 2.3949 37 1 1.6438 -0.3318 4.5508 38 1 1.4983 -1.8241 3.5910 39 1 3.9596 -0.0236 3.7571 40 1 3.7794 -1.6266 4.5110 41 1 5.9427 -1.0235 2.0483 42 1 7.2922 -5.3493 0.8230 43 1 5.8985 -4.9779 -0.2200 44 1 7.0092 -3.6789 0.2774 45 1 5.5839 -6.7637 2.9654 46 1 3.9961 -7.2325 2.3119 47 1 5.3679 -6.9631 1.2099 48 1 1.1679 -6.8957 1.8749 49 1 3.7913 -1.2933 0.2446 50 1 3.9323 0.1742 1.2418 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407976530.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:05 Heat of formation + Delta-G solvation = -78.595660 kcal Electronic energy + Delta-G solvation = -30131.354463 eV Core-core repulsion = 26320.081090 eV Total energy + Delta-G solvation = -3811.273373 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.48228 -36.69886 -36.11797 -35.82129 -35.19279 -33.05268 -32.55010 -30.52598 -29.04726 -28.53811 -27.18589 -25.49414 -25.13475 -24.16632 -22.68303 -20.73242 -20.51196 -19.39387 -18.56237 -17.09475 -16.81004 -16.42799 -16.28294 -15.45778 -14.95749 -14.79735 -14.46031 -14.19470 -14.09591 -13.88623 -13.46214 -13.25932 -13.17696 -12.79298 -12.71683 -12.40936 -12.07308 -11.94220 -11.85013 -11.75777 -11.55553 -11.44565 -11.36464 -11.30215 -11.20591 -11.14117 -10.93078 -10.83074 -10.72283 -10.57397 -10.49917 -10.35336 -10.17105 -10.09596 -10.01348 -9.30041 -8.99146 -8.43526 -8.07435 -7.92939 -6.04935 -4.13029 1.29868 3.29618 3.37892 3.39606 3.49756 4.05053 4.20793 4.41462 4.84947 4.95416 5.02358 5.09322 5.12290 5.23394 5.27358 5.31368 5.39701 5.49388 5.54431 5.61563 5.65238 5.71810 5.75543 5.83028 5.87130 5.93414 6.04437 6.08324 6.17396 6.20673 6.23145 6.30119 6.35918 6.42903 6.57605 6.68026 6.71917 6.91323 6.91816 7.15324 7.24505 7.29702 7.34886 7.56933 7.66651 7.81108 8.08184 8.29219 8.90074 9.54161 10.99913 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009401 B = 0.006692 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2977.697191 B = 4183.349983 C = 5989.377950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.077 3.923 3 C -0.186 4.186 4 N -0.522 5.522 5 C 0.051 3.949 6 C -0.117 4.117 7 C -0.136 4.136 8 C 0.155 3.845 9 H 0.120 0.880 10 N -1.126 6.126 11 S 2.782 3.218 12 O -1.003 7.003 13 O -0.979 6.979 14 N -0.991 5.991 15 C 0.109 3.891 16 C 0.266 3.734 17 H 0.058 0.942 18 C -0.145 4.145 19 C -0.522 4.522 20 H 0.063 0.937 21 C 0.070 3.930 22 N -0.886 5.886 23 Si 0.896 3.104 24 H -0.274 1.274 25 H -0.289 1.289 26 H -0.283 1.283 27 C 0.060 3.940 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.031 0.969 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.404 0.596 42 H 0.041 0.959 43 H 0.079 0.921 44 H 0.048 0.952 45 H 0.011 0.989 46 H 0.092 0.908 47 H 0.032 0.968 48 H 0.262 0.738 49 H 0.081 0.919 50 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.189 13.152 -2.425 13.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.031 4.031 3 C -0.245 4.245 4 N -0.246 5.246 5 C -0.077 4.077 6 C -0.155 4.155 7 C -0.176 4.176 8 C 0.047 3.953 9 H 0.138 0.862 10 N -0.883 5.883 11 S 2.791 3.209 12 O -0.987 6.987 13 O -0.963 6.963 14 N -0.833 5.833 15 C -0.038 4.038 16 C 0.164 3.836 17 H 0.076 0.924 18 C -0.204 4.204 19 C -0.561 4.561 20 H 0.081 0.919 21 C -0.133 4.133 22 N -0.524 5.524 23 Si 0.724 3.276 24 H -0.198 1.198 25 H -0.215 1.215 26 H -0.209 1.209 27 C -0.069 4.069 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.049 0.951 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.235 0.765 42 H 0.060 0.940 43 H 0.098 0.902 44 H 0.067 0.933 45 H 0.030 0.970 46 H 0.111 0.889 47 H 0.051 0.949 48 H 0.072 0.928 49 H 0.100 0.900 50 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.073 12.286 -1.519 12.380 hybrid contribution -0.339 1.298 -1.349 1.902 sum -0.412 13.584 -2.868 13.890 Atomic orbital electron populations 1.21876 0.94417 1.02787 1.01224 1.21684 0.95774 0.91962 0.93715 1.22492 1.01451 0.98491 1.02046 1.61987 1.10311 1.50822 1.01522 1.22194 1.00354 0.95114 0.90017 1.21563 0.95791 1.01675 0.96485 1.22108 0.95795 1.00757 0.98920 1.20823 0.78188 1.02674 0.93573 0.86232 1.56145 1.14948 1.32635 1.84567 1.01828 0.72312 0.72632 0.74137 1.93538 1.31468 1.86281 1.87426 1.93581 1.78478 1.82989 1.41224 1.57707 1.38013 1.49634 1.37987 1.21152 0.94002 0.99706 0.88923 1.18770 0.79420 0.87736 0.97717 0.92389 1.22055 1.01154 0.99819 0.97411 1.21346 1.00893 1.27962 1.05902 0.91867 1.24862 0.97780 0.94784 0.95893 1.69893 1.22793 1.29312 1.30408 0.86478 0.81215 0.77481 0.82411 1.19829 1.21508 1.20867 1.22243 0.87373 0.97858 0.99465 0.92603 0.92572 0.91491 0.89861 0.92459 0.92599 0.92357 0.95085 0.90534 0.91609 0.90133 0.92626 0.90329 0.76451 0.94013 0.90200 0.93322 0.97008 0.88922 0.94929 0.92803 0.90039 0.95020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.99 37.15 0.33 -1.29 16 2 C 0.08 0.94 2.96 -67.72 -0.20 0.74 16 3 C -0.19 -1.87 8.50 37.16 0.32 -1.56 16 4 N -0.52 -7.42 4.64 -226.70 -1.05 -8.47 16 5 C 0.05 0.64 4.63 -3.83 -0.02 0.62 16 6 C -0.12 -1.60 6.09 -26.64 -0.16 -1.77 16 7 C -0.14 -2.05 5.61 -26.60 -0.15 -2.20 16 8 C 0.15 2.53 2.84 -67.84 -0.19 2.34 16 9 H 0.12 2.40 6.40 -51.93 -0.33 2.07 16 10 N -1.13 -17.78 5.53 -4.82 -0.03 -17.80 16 11 S 2.78 54.28 6.00 -107.50 -0.65 53.64 16 12 O -1.00 -20.65 17.21 -57.17 -0.98 -21.63 16 13 O -0.98 -22.07 16.03 -57.17 -0.92 -22.98 16 14 N -0.99 -20.23 3.12 -115.85 -0.36 -20.59 16 15 C 0.11 1.93 9.28 59.85 0.56 2.49 16 16 C 0.27 6.32 1.93 -69.08 -0.13 6.19 16 17 H 0.06 1.53 6.74 -51.92 -0.35 1.18 16 18 C -0.14 -3.42 8.97 37.16 0.33 -3.09 16 19 C -0.52 -12.84 7.34 -34.44 -0.25 -13.10 16 20 H 0.06 1.53 7.33 -52.48 -0.38 1.15 16 21 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 22 N -0.89 -23.81 11.32 55.43 0.63 -23.19 16 23 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 C 0.06 0.86 4.56 -3.84 -0.02 0.84 16 28 H 0.06 0.58 6.30 -51.93 -0.33 0.25 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.07 8.08 -51.93 -0.42 0.65 16 32 H 0.06 0.56 6.52 -51.93 -0.34 0.22 16 33 H 0.05 0.57 6.65 -51.93 -0.35 0.23 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.03 0.36 6.62 -51.93 -0.34 0.02 16 36 H 0.08 0.90 6.03 -51.93 -0.31 0.58 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.08 1.32 7.71 -51.93 -0.40 0.92 16 41 H 0.40 5.22 8.84 -34.47 -0.30 4.91 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 1.43 7.02 -51.93 -0.36 1.07 16 44 H 0.05 0.75 7.79 -51.93 -0.40 0.35 16 45 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 46 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 47 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 48 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 49 H 0.08 1.22 8.08 -51.93 -0.42 0.80 16 50 H 0.03 0.40 6.73 -51.93 -0.35 0.05 16 LS Contribution 385.76 15.07 5.81 5.81 Total: -1.00 -29.59 385.76 -10.88 -40.47 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -8.63 Total: 7.57 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 0.32 Total: -8.10 kcal Atomic # 7 Polarization: -69.24 SS G_CDS: -0.81 Total: -70.05 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -1.90 Total: -44.62 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: 54.28 SS G_CDS: -0.65 Total: 53.64 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.59 -10.88 -40.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407976530.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.126 kcal (2) G-P(sol) polarization free energy of solvation -29.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds