Wall clock time and date at job start Tue Mar 31 2020 17:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47084 * 2 1 4 4 N 1.46895 * 109.47405 * 120.00178 * 2 1 3 5 5 C 1.46843 * 110.99970 * 299.21070 * 4 2 1 6 6 C 1.53042 * 109.52278 * 174.15687 * 5 4 2 7 7 C 1.53127 * 109.27596 * 59.17923 * 6 5 4 8 8 C 1.53123 * 109.15019 * 302.34079 * 7 6 5 9 9 H 1.08997 * 109.51083 * 297.71779 * 8 7 6 10 10 N 1.46509 * 109.49131 * 177.60657 * 8 7 6 11 11 S 1.65597 * 120.00097 * 95.19980 * 10 8 7 12 12 O 1.42092 * 106.40393 * 178.53814 * 11 10 8 13 13 O 1.42101 * 106.40147 * 311.46260 * 11 10 8 14 14 N 1.65597 * 107.21616 * 64.99833 * 11 10 8 15 15 C 1.46499 * 120.00170 * 89.99937 * 14 11 10 16 16 C 1.46504 * 120.00478 * 270.00090 * 14 11 10 17 17 H 1.09007 * 109.46588 * 0.02562 * 16 14 11 18 18 C 1.53002 * 109.47243 * 240.00124 * 16 14 11 19 19 C 1.50693 * 109.47466 * 119.99932 * 16 14 11 20 20 H 1.08007 * 120.00043 * 359.97438 * 19 16 14 21 21 C 1.37879 * 120.00057 * 180.02562 * 19 16 14 22 22 N 1.31512 * 119.99985 * 359.97438 * 21 19 16 23 23 Si 1.86801 * 119.99930 * 180.02562 * 21 19 16 24 24 H 1.48503 * 109.47229 * 359.97438 * 23 21 19 25 25 H 1.48491 * 109.47059 * 119.99779 * 23 21 19 26 26 H 1.48493 * 109.47193 * 240.00050 * 23 21 19 27 27 C 1.46847 * 110.99982 * 174.99705 * 4 2 1 28 28 H 1.09001 * 109.47145 * 299.99361 * 1 2 3 29 29 H 1.08998 * 109.47692 * 59.99346 * 1 2 3 30 30 H 1.09006 * 109.47147 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47145 * 240.00639 * 2 1 3 32 32 H 1.09001 * 109.46608 * 60.00310 * 3 2 1 33 33 H 1.08999 * 109.46866 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47389 * 300.00839 * 3 2 1 35 35 H 1.08993 * 109.46313 * 294.17341 * 5 4 2 36 36 H 1.09004 * 109.46429 * 54.14692 * 5 4 2 37 37 H 1.08997 * 109.50758 * 179.11703 * 6 5 4 38 38 H 1.08998 * 109.50897 * 299.20258 * 6 5 4 39 39 H 1.09003 * 109.52393 * 62.24889 * 7 6 5 40 40 H 1.08997 * 109.52177 * 182.37978 * 7 6 5 41 41 H 0.96996 * 119.99337 * 275.20494 * 10 8 7 42 42 H 1.09000 * 109.47191 * 89.99568 * 15 14 11 43 43 H 1.08992 * 109.47519 * 209.99827 * 15 14 11 44 44 H 1.09003 * 109.46823 * 330.00443 * 15 14 11 45 45 H 1.09006 * 109.47022 * 59.99507 * 18 16 14 46 46 H 1.09001 * 109.47012 * 179.97438 * 18 16 14 47 47 H 1.08997 * 109.47165 * 299.99586 * 18 16 14 48 48 H 0.97006 * 119.99677 * 179.97438 * 22 21 19 49 49 H 1.09002 * 109.46481 * 305.85957 * 27 4 2 50 50 H 1.08994 * 109.46283 * 65.83811 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.5643 -0.0159 2.4205 6 6 1.9681 -0.8420 3.6438 7 6 3.4907 -1.0033 3.6647 8 6 3.9435 -1.6666 2.3610 9 1 3.5052 -2.6619 2.2876 10 7 5.4047 -1.7727 2.3483 11 16 6.1377 -3.1717 2.8463 12 8 7.5351 -2.9722 2.6842 13 8 5.5408 -3.5172 4.0887 14 7 5.7074 -4.3587 1.7747 15 6 6.5294 -4.6071 0.5878 16 6 4.5047 -5.1604 2.0136 17 1 4.0274 -4.8330 2.9373 18 6 4.8909 -6.6360 2.1337 19 6 3.5467 -4.9840 0.8639 20 1 3.8074 -4.3387 0.0379 21 6 2.3369 -5.6454 0.8668 22 7 2.0192 -6.4307 1.8727 23 14 1.1497 -5.4271 -0.5588 24 1 1.7396 -4.4988 -1.5567 25 1 0.8950 -6.7436 -1.1968 26 1 -0.1294 -4.8649 -0.0561 27 6 3.4827 -0.8165 1.1749 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1299 1.4425 -0.0005 34 1 1.6765 1.9564 -0.8899 35 1 2.0229 0.9711 2.4813 36 1 0.4796 0.0887 2.3949 37 1 1.6438 -0.3318 4.5508 38 1 1.4983 -1.8241 3.5910 39 1 3.9596 -0.0236 3.7571 40 1 3.7794 -1.6266 4.5110 41 1 5.9427 -1.0235 2.0483 42 1 7.2922 -5.3493 0.8230 43 1 5.8985 -4.9779 -0.2200 44 1 7.0092 -3.6789 0.2774 45 1 5.5839 -6.7637 2.9654 46 1 3.9961 -7.2325 2.3119 47 1 5.3679 -6.9631 1.2099 48 1 1.1679 -6.8957 1.8749 49 1 3.7913 -1.2933 0.2446 50 1 3.9323 0.1742 1.2418 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407976530.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:04 Heat of formation + Delta-G solvation = -100.146388 kcal Electronic energy + Delta-G solvation = -30132.288973 eV Core-core repulsion = 26320.081090 eV Total energy + Delta-G solvation = -3812.207883 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.56494 -38.34306 -37.85338 -37.02428 -36.87252 -34.44495 -34.21295 -31.56961 -30.88714 -29.70964 -28.01855 -27.22321 -26.96939 -25.24347 -23.83619 -22.55316 -21.65571 -20.68635 -19.88697 -18.68281 -18.38279 -18.25128 -17.59594 -16.90884 -16.53114 -16.01302 -15.75388 -15.40249 -15.20084 -15.11058 -15.05455 -14.76551 -14.48012 -14.34268 -13.73134 -13.71395 -13.60939 -13.38209 -13.22237 -13.14797 -13.04373 -12.96554 -12.80624 -12.71876 -12.69703 -12.62848 -12.42697 -12.14504 -12.12641 -12.10193 -11.94468 -11.79171 -11.62119 -11.50499 -11.28678 -11.09838 -10.43971 -10.36067 -9.63805 -9.06983 -8.02756 -6.15355 -0.28034 1.47119 1.51183 1.59487 1.99583 2.51015 2.62604 3.04156 3.27513 3.47468 3.81761 3.87394 3.99333 4.07922 4.14944 4.22466 4.34494 4.38126 4.43756 4.48948 4.64106 4.72376 4.73452 4.77923 4.80852 4.82817 4.86331 4.94104 4.99697 5.01588 5.05632 5.07349 5.10784 5.17291 5.21765 5.28388 5.34012 5.36184 5.44177 5.51562 5.66337 5.72813 5.88484 6.10421 6.20368 6.30442 6.32178 6.35046 6.92740 7.54211 9.02046 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009401 B = 0.006692 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2977.697191 B = 4183.349983 C = 5989.377950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.074 3.926 3 C -0.177 4.177 4 N -0.549 5.549 5 C 0.056 3.944 6 C -0.115 4.115 7 C -0.134 4.134 8 C 0.154 3.846 9 H 0.077 0.923 10 N -1.109 6.109 11 S 2.797 3.203 12 O -1.010 7.010 13 O -1.013 7.013 14 N -0.997 5.997 15 C 0.102 3.898 16 C 0.275 3.725 17 H 0.024 0.976 18 C -0.139 4.139 19 C -0.514 4.514 20 H 0.067 0.933 21 C 0.025 3.975 22 N -0.917 5.917 23 Si 0.952 3.048 24 H -0.264 1.264 25 H -0.289 1.289 26 H -0.287 1.287 27 C 0.068 3.932 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.048 0.952 39 H 0.081 0.919 40 H 0.052 0.948 41 H 0.421 0.579 42 H 0.050 0.950 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.016 0.984 46 H 0.069 0.931 47 H 0.043 0.957 48 H 0.261 0.739 49 H 0.071 0.929 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.019 15.792 -3.863 16.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.034 4.034 3 C -0.236 4.236 4 N -0.274 5.274 5 C -0.072 4.072 6 C -0.154 4.154 7 C -0.174 4.174 8 C 0.047 3.953 9 H 0.095 0.905 10 N -0.870 5.870 11 S 2.806 3.194 12 O -0.994 6.994 13 O -0.997 6.997 14 N -0.839 5.839 15 C -0.044 4.044 16 C 0.171 3.829 17 H 0.042 0.958 18 C -0.199 4.199 19 C -0.553 4.553 20 H 0.085 0.915 21 C -0.174 4.174 22 N -0.556 5.556 23 Si 0.779 3.221 24 H -0.188 1.188 25 H -0.216 1.216 26 H -0.213 1.213 27 C -0.061 4.061 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.067 0.933 39 H 0.100 0.900 40 H 0.071 0.929 41 H 0.257 0.743 42 H 0.069 0.931 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.035 0.965 46 H 0.088 0.912 47 H 0.062 0.938 48 H 0.070 0.930 49 H 0.090 0.910 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.129 14.941 -2.981 15.236 hybrid contribution -0.361 0.494 -0.879 1.071 sum -0.233 15.435 -3.860 15.912 Atomic orbital electron populations 1.21856 0.93823 1.01640 1.02653 1.21729 0.96242 0.93113 0.92311 1.22391 1.01308 0.96798 1.03057 1.61945 1.10133 1.52467 1.02899 1.22183 1.01060 0.95363 0.88562 1.21562 0.94585 1.00654 0.98570 1.22079 0.96957 1.01299 0.97055 1.20761 0.77784 1.01168 0.95601 0.90455 1.55696 1.15027 1.32050 1.84271 1.01212 0.71847 0.72914 0.73447 1.93521 1.31974 1.86507 1.87448 1.93541 1.79038 1.83795 1.43318 1.57603 1.37285 1.49959 1.39044 1.21357 0.93853 1.01422 0.87773 1.18401 0.80441 0.87994 0.96053 0.95776 1.21954 1.00269 0.99580 0.98124 1.21496 1.00897 1.27125 1.05824 0.91470 1.25518 0.99317 0.94814 0.97800 1.70018 1.23136 1.30429 1.32052 0.85600 0.79183 0.77289 0.80065 1.18801 1.21584 1.21334 1.22103 0.87987 0.98393 0.97613 0.91632 0.90705 0.93886 0.91042 0.91801 0.92665 0.90983 0.93036 0.89595 0.89269 0.93339 0.90015 0.92900 0.74347 0.93148 0.90446 0.90760 0.96500 0.91184 0.93795 0.93014 0.91032 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.99 71.98 0.65 -2.25 16 2 C 0.07 1.64 2.96 44.92 0.13 1.78 16 3 C -0.18 -2.94 8.50 71.98 0.61 -2.33 16 4 N -0.55 -14.80 4.64 -871.15 -4.04 -18.85 16 5 C 0.06 1.28 4.63 86.33 0.40 1.68 16 6 C -0.12 -3.08 6.09 30.65 0.19 -2.89 16 7 C -0.13 -3.96 5.61 30.68 0.17 -3.78 16 8 C 0.15 5.00 2.84 45.04 0.13 5.12 16 9 H 0.08 3.22 6.40 -2.39 -0.02 3.21 16 10 N -1.11 -33.95 5.53 -169.15 -0.94 -34.88 16 11 S 2.80 108.78 6.00 -56.49 -0.34 108.44 16 12 O -1.01 -40.35 17.21 -128.00 -2.20 -42.55 16 13 O -1.01 -46.94 16.03 -128.00 -2.05 -48.99 16 14 N -1.00 -40.68 3.12 -520.44 -1.62 -42.30 16 15 C 0.10 3.47 9.28 127.77 1.19 4.66 16 16 C 0.28 13.38 1.93 44.24 0.09 13.46 16 17 H 0.02 1.35 6.74 -2.38 -0.02 1.34 16 18 C -0.14 -6.73 8.97 71.98 0.65 -6.08 16 19 C -0.51 -25.62 7.34 25.60 0.19 -25.43 16 20 H 0.07 3.24 7.33 -2.91 -0.02 3.22 16 21 C 0.03 1.31 5.30 84.66 0.45 1.76 16 22 N -0.92 -50.77 11.32 21.45 0.24 -50.53 16 23 Si 0.95 42.03 29.54 68.60 2.03 44.05 16 24 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 25 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 26 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 27 C 0.07 1.85 4.56 86.32 0.39 2.24 16 28 H 0.06 1.19 6.30 -2.39 -0.02 1.17 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.07 1.73 8.08 -2.39 -0.02 1.71 16 32 H 0.06 0.99 6.52 -2.39 -0.02 0.98 16 33 H 0.05 0.93 6.65 -2.39 -0.02 0.91 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.05 0.99 6.62 -2.39 -0.02 0.98 16 36 H 0.09 1.81 6.03 -2.38 -0.01 1.80 16 37 H 0.09 1.93 8.14 -2.39 -0.02 1.92 16 38 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.05 1.82 7.71 -2.39 -0.02 1.80 16 41 H 0.42 9.94 8.84 -96.75 -0.86 9.09 16 42 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.08 2.68 7.02 -2.39 -0.02 2.66 16 44 H 0.07 2.14 7.79 -2.39 -0.02 2.12 16 45 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 46 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 47 H 0.04 1.95 7.67 -2.39 -0.02 1.93 16 48 H 0.26 13.87 8.31 -92.70 -0.77 13.10 16 49 H 0.07 2.06 8.08 -2.39 -0.02 2.04 16 50 H 0.06 1.24 6.73 -2.39 -0.02 1.23 16 Total: -1.00 -64.64 385.76 -3.63 -68.28 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: 0.07 Total: 29.40 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: 5.23 Total: -12.07 kcal Atomic # 7 Polarization: -140.19 SS G_CDS: -6.36 Total: -146.56 kcal Atomic # 8 Polarization: -87.29 SS G_CDS: -4.26 Total: -91.54 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 16 Polarization: 108.78 SS G_CDS: -0.34 Total: 108.44 kcal Total: -64.64 -3.63 -68.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407976530.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.871 kcal (2) G-P(sol) polarization free energy of solvation -64.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds