Wall clock time and date at job start Tue Mar 31 2020 17:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47088 * 2 1 4 4 C 1.50699 * 109.47511 * 239.99608 * 2 1 3 5 5 H 1.08003 * 120.00267 * 240.00029 * 4 2 1 6 6 C 1.37874 * 120.00063 * 60.00048 * 4 2 1 7 7 N 1.31524 * 119.99858 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00422 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46733 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47353 * 119.99444 * 8 6 4 11 11 H 1.48503 * 109.47252 * 240.00216 * 8 6 4 12 12 N 1.46500 * 109.46933 * 119.99535 * 2 1 3 13 13 C 1.46497 * 120.00161 * 60.00181 * 12 2 1 14 14 S 1.65603 * 120.00091 * 240.00371 * 12 2 1 15 15 O 1.42100 * 106.40154 * 336.45618 * 14 12 2 16 16 O 1.42104 * 106.40274 * 203.54131 * 14 12 2 17 17 N 1.65600 * 107.22053 * 89.99773 * 14 12 2 18 18 C 1.46499 * 120.00307 * 270.00314 * 17 14 12 19 19 C 1.46500 * 119.99672 * 89.99760 * 17 14 12 20 20 C 1.53008 * 109.46790 * 95.00309 * 19 17 14 21 21 H 1.09000 * 109.53252 * 305.09801 * 20 19 17 22 22 C 1.53120 * 109.50107 * 184.99798 * 20 19 17 23 23 C 1.53123 * 109.21163 * 182.43700 * 22 20 19 24 24 C 1.53039 * 109.27546 * 57.62218 * 23 22 20 25 25 N 1.46842 * 109.52666 * 300.81951 * 24 23 22 26 26 C 1.46892 * 111.00192 * 185.84212 * 25 24 23 27 27 C 1.46848 * 111.19688 * 61.74516 * 25 24 23 28 28 H 1.08994 * 109.47439 * 300.00706 * 1 2 3 29 29 H 1.08999 * 109.46689 * 60.00772 * 1 2 3 30 30 H 1.09002 * 109.47088 * 180.02562 * 1 2 3 31 31 H 0.97003 * 119.99824 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47557 * 269.99978 * 13 12 2 33 33 H 1.09001 * 109.46790 * 29.99891 * 13 12 2 34 34 H 1.08999 * 109.47405 * 150.00129 * 13 12 2 35 35 H 1.08998 * 109.46748 * 270.00075 * 18 17 14 36 36 H 1.09002 * 109.46791 * 29.99709 * 18 17 14 37 37 H 1.08990 * 109.47419 * 149.99818 * 18 17 14 38 38 H 1.09000 * 109.47186 * 335.00494 * 19 17 14 39 39 H 1.09001 * 109.47089 * 215.00294 * 19 17 14 40 40 H 1.09002 * 109.52427 * 62.49974 * 22 20 19 41 41 H 1.08995 * 109.52208 * 302.37293 * 22 20 19 42 42 H 1.08999 * 109.50194 * 177.56161 * 23 22 20 43 43 H 1.09001 * 109.49925 * 297.68290 * 23 22 20 44 44 H 1.09001 * 109.46537 * 60.83864 * 24 23 22 45 45 H 1.09004 * 109.45969 * 180.80356 * 24 23 22 46 46 H 1.09005 * 109.47200 * 63.95892 * 26 25 24 47 47 H 1.09006 * 109.47368 * 183.95197 * 26 25 24 48 48 H 1.08995 * 109.47256 * 303.95070 * 26 25 24 49 49 H 1.08999 * 109.46555 * 58.27446 * 27 25 24 50 50 H 1.08998 * 109.46337 * 178.25654 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3216 -1.1205 -4.0078 9 1 3.1467 -2.2871 -3.6035 10 1 1.1664 -1.5870 -4.8159 11 1 3.1469 -0.1876 -4.8164 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4282 14 16 2.9703 0.1144 2.2863 15 8 3.5794 1.1831 1.5749 16 8 3.7117 -0.8787 2.9817 17 7 1.9605 0.8093 3.3998 18 6 1.4466 2.1632 3.1783 19 6 1.5810 0.0701 4.6063 20 6 2.5157 0.4547 5.7551 21 1 3.5504 0.2930 5.4528 22 6 2.2005 -0.4072 6.9809 23 6 3.0976 0.0244 8.1444 24 6 2.8761 1.5118 8.4284 25 7 3.1931 2.2935 7.2264 26 6 3.1252 3.7346 7.5026 27 6 2.3125 1.9298 6.1089 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 0.7088 1.1611 -3.4845 32 1 0.7375 -2.1443 1.9995 33 1 1.5295 -2.5968 0.4710 34 1 2.4628 -2.5817 1.9866 35 1 2.1319 2.8882 3.6174 36 1 1.3593 2.3480 2.1076 37 1 0.4665 2.2607 3.6450 38 1 1.6600 -1.0003 4.4165 39 1 0.5540 0.3166 4.8755 40 1 2.3866 -1.4554 6.7468 41 1 1.1549 -0.2762 7.2591 42 1 2.8473 -0.5568 9.0318 43 1 4.1417 -0.1443 7.8807 44 1 1.8350 1.6776 8.7053 45 1 3.5238 1.8256 9.2470 46 1 3.8894 4.0010 8.2328 47 1 3.2952 4.2898 6.5800 48 1 2.1409 3.9825 7.8997 49 1 1.2740 2.0935 6.3967 50 1 2.5510 2.5470 5.2428 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407976982.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:08 Heat of formation + Delta-G solvation = -71.611685 kcal Electronic energy + Delta-G solvation = -29218.143216 eV Core-core repulsion = 25407.172690 eV Total energy + Delta-G solvation = -3810.970525 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.43515 -36.69835 -36.29019 -36.11476 -35.16053 -33.63849 -32.56812 -31.15214 -29.10033 -27.65950 -26.74694 -25.49257 -25.18440 -24.40012 -22.98208 -21.69386 -20.69834 -19.81369 -18.27236 -17.22777 -16.94744 -16.30363 -16.07459 -15.82225 -15.30558 -14.92619 -14.71550 -14.50847 -14.28064 -13.94865 -13.42255 -13.34087 -13.21044 -13.03959 -12.75058 -12.66046 -12.40733 -12.23652 -12.15688 -11.99128 -11.77618 -11.57188 -11.34837 -11.34061 -11.28223 -11.19629 -11.06521 -10.91052 -10.84680 -10.82558 -10.53619 -10.40819 -10.35940 -10.21941 -10.05070 -9.27307 -8.80906 -8.48334 -8.45363 -7.94730 -6.07905 -4.14172 1.20508 3.27686 3.35934 3.39903 3.47664 3.75370 4.09350 4.40036 4.60771 4.67185 4.74603 4.86538 4.95309 5.08762 5.15093 5.22284 5.23950 5.25270 5.30556 5.43378 5.56314 5.58230 5.59037 5.61809 5.67849 5.69298 5.73396 5.80361 5.84459 6.00728 6.03150 6.04192 6.12444 6.24463 6.36861 6.38338 6.65286 6.72065 6.84373 6.85950 6.91583 6.93927 7.03606 7.47936 7.63158 7.79107 8.04710 8.27546 8.88134 9.51589 10.97839 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.025875 B = 0.003211 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.864255 B = 8718.520975 C = 9035.522211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.267 3.733 3 H 0.057 0.943 4 C -0.520 4.520 5 H 0.063 0.937 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.990 5.990 13 C 0.097 3.903 14 S 2.777 3.223 15 O -0.972 6.972 16 O -0.992 6.992 17 N -1.013 6.013 18 C 0.095 3.905 19 C 0.135 3.865 20 C -0.106 4.106 21 H 0.087 0.913 22 C -0.115 4.115 23 C -0.117 4.117 24 C 0.056 3.944 25 N -0.545 5.545 26 C 0.026 3.974 27 C 0.057 3.943 28 H 0.010 0.990 29 H 0.092 0.908 30 H 0.032 0.968 31 H 0.262 0.738 32 H 0.036 0.964 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.030 0.970 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.069 0.931 48 H 0.023 0.977 49 H 0.031 0.969 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.220 1.231 20.156 20.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.164 3.836 3 H 0.075 0.925 4 C -0.559 4.559 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.832 5.832 13 C -0.050 4.050 14 S 2.786 3.214 15 O -0.956 6.956 16 O -0.976 6.976 17 N -0.850 5.850 18 C -0.050 4.050 19 C 0.008 3.992 20 C -0.127 4.127 21 H 0.106 0.894 22 C -0.153 4.153 23 C -0.155 4.155 24 C -0.072 4.072 25 N -0.269 5.269 26 C -0.122 4.122 27 C -0.071 4.071 28 H 0.029 0.971 29 H 0.110 0.890 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.048 0.952 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.087 0.913 48 H 0.041 0.959 49 H 0.049 0.951 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.883 1.323 19.873 19.937 hybrid contribution -1.083 -0.174 -0.626 1.263 sum -1.966 1.149 19.247 19.381 Atomic orbital electron populations 1.22106 0.98252 0.99751 1.00461 1.18726 0.91278 0.92958 0.80593 0.92493 1.21382 1.31473 1.13015 0.90077 0.91869 1.24909 0.94948 0.95023 0.99010 1.69871 1.36600 1.22759 1.23663 0.86446 0.78601 0.79706 0.82697 1.19707 1.20996 1.20868 1.57753 1.69977 1.19838 1.35679 1.21293 0.98631 0.82446 1.02622 1.02133 0.73832 0.73110 0.72295 1.93595 1.73882 1.55892 1.72194 1.93520 1.69151 1.60391 1.74504 1.58139 1.68003 1.24759 1.34129 1.21510 0.98777 0.82192 1.02549 1.21220 0.98124 0.96000 0.83826 1.21704 1.01835 0.94227 0.94890 0.89417 1.21569 0.99311 0.99820 0.94583 1.21576 1.01131 0.94652 0.98116 1.22094 0.98709 0.94176 0.92227 1.61878 1.53936 1.04767 1.06369 1.22345 0.99807 0.88174 1.01920 1.22349 0.93852 0.96911 0.93979 0.97141 0.88980 0.94873 0.92764 0.94583 0.89887 0.91963 0.92863 0.90576 0.91571 0.89992 0.90874 0.91177 0.92211 0.91537 0.90892 0.95158 0.91049 0.91474 0.91262 0.95867 0.95058 0.89728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 8.97 37.16 0.33 -2.95 16 2 C 0.27 6.51 2.62 -69.08 -0.18 6.33 16 3 H 0.06 1.53 6.91 -51.93 -0.36 1.18 16 4 C -0.52 -13.99 7.99 -34.44 -0.28 -14.27 16 5 H 0.06 1.70 7.33 -52.48 -0.38 1.31 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.63 11.32 55.43 0.63 -24.00 16 8 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.99 -20.64 3.12 -115.86 -0.36 -21.00 16 13 C 0.10 1.72 9.65 59.85 0.58 2.30 16 14 S 2.78 55.34 6.01 -107.50 -0.65 54.69 16 15 O -0.97 -22.97 15.78 -57.17 -0.90 -23.88 16 16 O -0.99 -20.49 15.71 -57.17 -0.90 -21.39 16 17 N -1.01 -15.39 3.15 -121.76 -0.38 -15.77 16 18 C 0.10 1.29 9.12 59.85 0.55 1.84 16 19 C 0.14 1.67 4.88 -4.04 -0.02 1.65 16 20 C -0.11 -1.28 2.56 -90.53 -0.23 -1.51 16 21 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 22 C -0.11 -1.12 5.28 -26.61 -0.14 -1.26 16 23 C -0.12 -1.06 6.10 -26.65 -0.16 -1.23 16 24 C 0.06 0.51 5.46 -3.84 -0.02 0.49 16 25 N -0.55 -5.98 4.91 -242.96 -1.19 -7.17 16 26 C 0.03 0.23 9.62 60.06 0.58 0.81 16 27 C 0.06 0.64 4.23 -3.83 -0.02 0.62 16 28 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 30 H 0.03 0.70 7.67 -51.93 -0.40 0.31 16 31 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 1.55 7.02 -51.93 -0.36 1.19 16 34 H 0.06 1.04 7.02 -51.93 -0.36 0.68 16 35 H 0.05 0.66 6.24 -51.93 -0.32 0.34 16 36 H 0.08 1.18 7.79 -51.93 -0.40 0.77 16 37 H 0.07 0.71 7.94 -51.93 -0.41 0.30 16 38 H 0.08 1.02 7.61 -51.93 -0.40 0.62 16 39 H 0.07 0.75 7.96 -51.93 -0.41 0.33 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.62 8.02 -51.93 -0.42 0.21 16 48 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 49 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 50 H 0.08 1.02 5.07 -51.93 -0.26 0.76 16 LS Contribution 391.30 15.07 5.90 5.90 Total: -1.00 -31.63 391.30 -11.01 -42.64 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -9.02 Total: -0.55 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 0.89 Total: -5.54 kcal Atomic # 7 Polarization: -66.63 SS G_CDS: -1.31 Total: -67.94 kcal Atomic # 8 Polarization: -43.47 SS G_CDS: -1.80 Total: -45.27 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 55.34 SS G_CDS: -0.65 Total: 54.69 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.63 -11.01 -42.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407976982.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.974 kcal (2) G-P(sol) polarization free energy of solvation -31.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds