Wall clock time and date at job start Tue Mar 31 2020 17:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47088 * 2 1 4 4 C 1.50699 * 109.47511 * 239.99608 * 2 1 3 5 5 H 1.08003 * 120.00267 * 240.00029 * 4 2 1 6 6 C 1.37874 * 120.00063 * 60.00048 * 4 2 1 7 7 N 1.31524 * 119.99858 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00422 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46733 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47353 * 119.99444 * 8 6 4 11 11 H 1.48503 * 109.47252 * 240.00216 * 8 6 4 12 12 N 1.46500 * 109.46933 * 119.99535 * 2 1 3 13 13 C 1.46497 * 120.00161 * 60.00181 * 12 2 1 14 14 S 1.65603 * 120.00091 * 240.00371 * 12 2 1 15 15 O 1.42100 * 106.40154 * 336.45618 * 14 12 2 16 16 O 1.42104 * 106.40274 * 203.54131 * 14 12 2 17 17 N 1.65600 * 107.22053 * 89.99773 * 14 12 2 18 18 C 1.46499 * 120.00307 * 270.00314 * 17 14 12 19 19 C 1.46500 * 119.99672 * 89.99760 * 17 14 12 20 20 C 1.53008 * 109.46790 * 95.00309 * 19 17 14 21 21 H 1.09000 * 109.53252 * 305.09801 * 20 19 17 22 22 C 1.53120 * 109.50107 * 184.99798 * 20 19 17 23 23 C 1.53123 * 109.21163 * 182.43700 * 22 20 19 24 24 C 1.53039 * 109.27546 * 57.62218 * 23 22 20 25 25 N 1.46842 * 109.52666 * 300.81951 * 24 23 22 26 26 C 1.46892 * 111.00192 * 185.84212 * 25 24 23 27 27 C 1.46848 * 111.19688 * 61.74516 * 25 24 23 28 28 H 1.08994 * 109.47439 * 300.00706 * 1 2 3 29 29 H 1.08999 * 109.46689 * 60.00772 * 1 2 3 30 30 H 1.09002 * 109.47088 * 180.02562 * 1 2 3 31 31 H 0.97003 * 119.99824 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47557 * 269.99978 * 13 12 2 33 33 H 1.09001 * 109.46790 * 29.99891 * 13 12 2 34 34 H 1.08999 * 109.47405 * 150.00129 * 13 12 2 35 35 H 1.08998 * 109.46748 * 270.00075 * 18 17 14 36 36 H 1.09002 * 109.46791 * 29.99709 * 18 17 14 37 37 H 1.08990 * 109.47419 * 149.99818 * 18 17 14 38 38 H 1.09000 * 109.47186 * 335.00494 * 19 17 14 39 39 H 1.09001 * 109.47089 * 215.00294 * 19 17 14 40 40 H 1.09002 * 109.52427 * 62.49974 * 22 20 19 41 41 H 1.08995 * 109.52208 * 302.37293 * 22 20 19 42 42 H 1.08999 * 109.50194 * 177.56161 * 23 22 20 43 43 H 1.09001 * 109.49925 * 297.68290 * 23 22 20 44 44 H 1.09001 * 109.46537 * 60.83864 * 24 23 22 45 45 H 1.09004 * 109.45969 * 180.80356 * 24 23 22 46 46 H 1.09005 * 109.47200 * 63.95892 * 26 25 24 47 47 H 1.09006 * 109.47368 * 183.95197 * 26 25 24 48 48 H 1.08995 * 109.47256 * 303.95070 * 26 25 24 49 49 H 1.08999 * 109.46555 * 58.27446 * 27 25 24 50 50 H 1.08998 * 109.46337 * 178.25654 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3216 -1.1205 -4.0078 9 1 3.1467 -2.2871 -3.6035 10 1 1.1664 -1.5870 -4.8159 11 1 3.1469 -0.1876 -4.8164 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4282 14 16 2.9703 0.1144 2.2863 15 8 3.5794 1.1831 1.5749 16 8 3.7117 -0.8787 2.9817 17 7 1.9605 0.8093 3.3998 18 6 1.4466 2.1632 3.1783 19 6 1.5810 0.0701 4.6063 20 6 2.5157 0.4547 5.7551 21 1 3.5504 0.2930 5.4528 22 6 2.2005 -0.4072 6.9809 23 6 3.0976 0.0244 8.1444 24 6 2.8761 1.5118 8.4284 25 7 3.1931 2.2935 7.2264 26 6 3.1252 3.7346 7.5026 27 6 2.3125 1.9298 6.1089 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 0.7088 1.1611 -3.4845 32 1 0.7375 -2.1443 1.9995 33 1 1.5295 -2.5968 0.4710 34 1 2.4628 -2.5817 1.9866 35 1 2.1319 2.8882 3.6174 36 1 1.3593 2.3480 2.1076 37 1 0.4665 2.2607 3.6450 38 1 1.6600 -1.0003 4.4165 39 1 0.5540 0.3166 4.8755 40 1 2.3866 -1.4554 6.7468 41 1 1.1549 -0.2762 7.2591 42 1 2.8473 -0.5568 9.0318 43 1 4.1417 -0.1443 7.8807 44 1 1.8350 1.6776 8.7053 45 1 3.5238 1.8256 9.2470 46 1 3.8894 4.0010 8.2328 47 1 3.2952 4.2898 6.5800 48 1 2.1409 3.9825 7.8997 49 1 1.2740 2.0935 6.3967 50 1 2.5510 2.5470 5.2428 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407976982.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:08 Heat of formation + Delta-G solvation = -93.995467 kcal Electronic energy + Delta-G solvation = -29219.113849 eV Core-core repulsion = 25407.172690 eV Total energy + Delta-G solvation = -3811.941159 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.26826 -38.36811 -37.87199 -37.34118 -36.84841 -34.52381 -34.46563 -32.01758 -30.91609 -28.64055 -27.50191 -27.24069 -26.99645 -25.47520 -23.75749 -22.63834 -22.47832 -20.62490 -19.78482 -18.73123 -18.61947 -18.08978 -17.36978 -16.85212 -16.68436 -16.16122 -15.77244 -15.46734 -15.32465 -15.21261 -14.92130 -14.86677 -14.41237 -14.09355 -14.00287 -13.81409 -13.74928 -13.45886 -13.37100 -13.15756 -13.14323 -13.00996 -12.97712 -12.87236 -12.72198 -12.61226 -12.54781 -12.28498 -12.18459 -12.13016 -11.95154 -11.85267 -11.64747 -11.43089 -11.17379 -11.16187 -10.51190 -9.97637 -9.62781 -9.23133 -8.12432 -6.25728 -0.34509 1.40607 1.43716 1.54075 2.04399 2.42238 2.58213 3.01339 3.15796 3.38348 3.73706 3.81647 3.89754 4.04923 4.15950 4.22412 4.35192 4.42183 4.50762 4.55829 4.58078 4.62970 4.70359 4.73603 4.75214 4.77255 4.80287 4.86150 4.94187 4.98379 5.01369 5.02161 5.05438 5.07380 5.11257 5.15820 5.22629 5.26117 5.38424 5.48807 5.60176 5.61496 5.81718 5.89578 6.15751 6.16238 6.20818 6.30459 6.81866 7.43056 8.91839 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.025875 B = 0.003211 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.864255 B = 8718.520975 C = 9035.522211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.274 3.726 3 H 0.023 0.977 4 C -0.540 4.540 5 H 0.055 0.945 6 C 0.018 3.982 7 N -0.912 5.912 8 Si 0.954 3.046 9 H -0.271 1.271 10 H -0.273 1.273 11 H -0.284 1.284 12 N -0.998 5.998 13 C 0.092 3.908 14 S 2.787 3.213 15 O -1.017 7.017 16 O -1.004 7.004 17 N -1.003 6.003 18 C 0.091 3.909 19 C 0.129 3.871 20 C -0.105 4.105 21 H 0.051 0.949 22 C -0.112 4.112 23 C -0.117 4.117 24 C 0.056 3.944 25 N -0.568 5.568 26 C 0.026 3.974 27 C 0.059 3.941 28 H 0.037 0.963 29 H 0.066 0.934 30 H 0.040 0.960 31 H 0.265 0.735 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.108 0.892 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.054 0.946 44 H 0.041 0.959 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.063 0.937 48 H 0.033 0.967 49 H 0.048 0.952 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.807 0.632 22.100 22.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.169 3.831 3 H 0.041 0.959 4 C -0.580 4.580 5 H 0.073 0.927 6 C -0.182 4.182 7 N -0.552 5.552 8 Si 0.780 3.220 9 H -0.195 1.195 10 H -0.198 1.198 11 H -0.210 1.210 12 N -0.840 5.840 13 C -0.053 4.053 14 S 2.798 3.202 15 O -1.001 7.001 16 O -0.988 6.988 17 N -0.843 5.843 18 C -0.054 4.054 19 C 0.003 3.997 20 C -0.126 4.126 21 H 0.070 0.930 22 C -0.150 4.150 23 C -0.154 4.154 24 C -0.071 4.071 25 N -0.293 5.293 26 C -0.122 4.122 27 C -0.069 4.069 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.122 0.878 38 H 0.101 0.899 39 H 0.126 0.874 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.073 0.927 44 H 0.059 0.941 45 H 0.098 0.902 46 H 0.093 0.907 47 H 0.082 0.918 48 H 0.052 0.948 49 H 0.066 0.934 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.467 0.702 21.828 21.978 hybrid contribution -0.556 0.038 -1.120 1.251 sum -3.023 0.741 20.708 20.941 Atomic orbital electron populations 1.21886 0.96638 1.00170 1.00465 1.18395 0.92346 0.91218 0.81120 0.95902 1.21701 1.31616 1.13057 0.91619 0.92657 1.25624 0.95202 0.95734 1.01599 1.69979 1.37239 1.23640 1.24294 0.85565 0.78313 0.78607 0.79504 1.19507 1.19840 1.20990 1.57650 1.69994 1.21108 1.35234 1.21465 1.00541 0.80711 1.02595 1.01539 0.73988 0.72380 0.72315 1.93528 1.75494 1.57375 1.73743 1.93492 1.69937 1.60871 1.74493 1.57741 1.67428 1.25315 1.33861 1.21685 1.00941 0.81270 1.01514 1.21540 0.99974 0.95766 0.82396 1.21652 0.99647 0.95521 0.95787 0.93018 1.21568 1.00577 0.99237 0.93602 1.21590 0.99948 0.95152 0.98747 1.22139 0.99477 0.93810 0.91720 1.61867 1.54423 1.05930 1.07087 1.22359 1.00688 0.87165 1.01951 1.22273 0.94772 0.95960 0.93865 0.94451 0.91570 0.94081 0.92609 0.91262 0.91126 0.91126 0.92049 0.92989 0.87807 0.89930 0.87433 0.91200 0.90176 0.89383 0.92743 0.94129 0.90247 0.90700 0.91809 0.94806 0.93436 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.86 8.97 71.98 0.65 -5.21 16 2 C 0.27 13.51 2.62 44.24 0.12 13.63 16 3 H 0.02 1.29 6.91 -2.39 -0.02 1.28 16 4 C -0.54 -29.58 7.99 25.60 0.20 -29.37 16 5 H 0.06 3.03 7.33 -2.91 -0.02 3.01 16 6 C 0.02 1.00 5.30 84.65 0.45 1.45 16 7 N -0.91 -51.20 11.32 21.45 0.24 -50.96 16 8 Si 0.95 43.52 29.54 68.60 2.03 45.55 16 9 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 N -1.00 -41.58 3.12 -520.46 -1.62 -43.20 16 13 C 0.09 3.19 9.65 127.77 1.23 4.42 16 14 S 2.79 112.37 6.01 -56.49 -0.34 112.03 16 15 O -1.02 -50.05 15.78 -128.00 -2.02 -52.07 16 16 O -1.00 -41.80 15.71 -128.00 -2.01 -43.81 16 17 N -1.00 -29.39 3.15 -539.13 -1.70 -31.09 16 18 C 0.09 2.35 9.12 127.77 1.17 3.52 16 19 C 0.13 2.87 4.88 86.38 0.42 3.29 16 20 C -0.11 -2.37 2.56 -10.73 -0.03 -2.40 16 21 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 22 C -0.11 -1.90 5.28 30.68 0.16 -1.74 16 23 C -0.12 -1.88 6.10 30.65 0.19 -1.69 16 24 C 0.06 0.90 5.46 86.33 0.47 1.37 16 25 N -0.57 -11.55 4.91 -922.58 -4.53 -16.08 16 26 C 0.03 0.43 9.62 127.69 1.23 1.66 16 27 C 0.06 1.22 4.23 86.33 0.37 1.58 16 28 H 0.04 1.40 8.14 -2.39 -0.02 1.39 16 29 H 0.07 3.31 6.07 -2.39 -0.01 3.29 16 30 H 0.04 1.71 7.67 -2.39 -0.02 1.69 16 31 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 32 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.07 2.60 7.02 -2.39 -0.02 2.59 16 34 H 0.07 2.29 7.02 -2.39 -0.02 2.28 16 35 H 0.06 1.49 6.24 -2.39 -0.01 1.48 16 36 H 0.05 1.61 7.79 -2.39 -0.02 1.60 16 37 H 0.10 1.89 7.94 -2.39 -0.02 1.87 16 38 H 0.08 1.85 7.61 -2.39 -0.02 1.84 16 39 H 0.11 1.72 7.96 -2.39 -0.02 1.70 16 40 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.08 1.13 8.12 -2.38 -0.02 1.11 16 46 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 47 H 0.06 1.09 8.02 -2.38 -0.02 1.07 16 48 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 49 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.07 1.64 5.07 -2.39 -0.01 1.63 16 Total: -1.00 -69.86 391.30 -2.44 -72.30 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.89 Total: 16.82 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: 6.62 Total: -9.49 kcal Atomic # 7 Polarization: -133.72 SS G_CDS: -7.61 Total: -141.33 kcal Atomic # 8 Polarization: -91.85 SS G_CDS: -4.03 Total: -95.88 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 112.37 SS G_CDS: -0.34 Total: 112.03 kcal Total: -69.86 -2.44 -72.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407976982.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.695 kcal (2) G-P(sol) polarization free energy of solvation -69.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds