Wall clock time and date at job start Tue Mar 31 2020 17:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46915 * 2 1 4 4 C 1.50701 * 109.46885 * 119.99348 * 2 1 3 5 5 H 1.08002 * 119.99764 * 114.42208 * 4 2 1 6 6 C 1.37878 * 120.00651 * 294.42356 * 4 2 1 7 7 N 1.31521 * 119.99407 * 0.85936 * 6 4 2 8 8 Si 1.86797 * 120.00444 * 180.86094 * 6 4 2 9 9 H 1.48504 * 109.46941 * 59.99765 * 8 6 4 10 10 H 1.48497 * 109.46965 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46883 * 299.99901 * 8 6 4 12 12 N 1.46501 * 109.47480 * 239.99725 * 2 1 3 13 13 C 1.46492 * 120.00041 * 302.90304 * 12 2 1 14 14 S 1.65597 * 119.99569 * 122.90498 * 12 2 1 15 15 O 1.42101 * 106.39746 * 161.54581 * 14 12 2 16 16 O 1.42094 * 106.40759 * 28.62354 * 14 12 2 17 17 N 1.65607 * 107.21545 * 275.08097 * 14 12 2 18 18 C 1.46497 * 120.00023 * 265.65029 * 17 14 12 19 19 C 1.46495 * 119.99554 * 85.65754 * 17 14 12 20 20 C 1.53004 * 109.47597 * 94.27896 * 19 17 14 21 21 H 1.09005 * 109.53271 * 305.90655 * 20 19 17 22 22 C 1.53111 * 109.50565 * 185.80645 * 20 19 17 23 23 C 1.53122 * 109.16363 * 182.40223 * 22 20 19 24 24 C 1.53043 * 109.27479 * 57.65495 * 23 22 20 25 25 N 1.46847 * 109.52372 * 300.82228 * 24 23 22 26 26 C 1.46894 * 110.99980 * 185.84234 * 25 24 23 27 27 C 1.46846 * 111.19717 * 61.74229 * 25 24 23 28 28 H 1.09005 * 109.46869 * 186.24441 * 1 2 3 29 29 H 1.08991 * 109.47817 * 306.24580 * 1 2 3 30 30 H 1.09004 * 109.46910 * 66.25298 * 1 2 3 31 31 H 0.97002 * 119.99663 * 180.02562 * 7 6 4 32 32 H 1.09005 * 109.47354 * 270.00332 * 13 12 2 33 33 H 1.09004 * 109.47203 * 30.00060 * 13 12 2 34 34 H 1.08994 * 109.47478 * 149.99860 * 13 12 2 35 35 H 1.09000 * 109.47647 * 270.00213 * 18 17 14 36 36 H 1.08998 * 109.46912 * 30.00516 * 18 17 14 37 37 H 1.09005 * 109.46795 * 150.00415 * 18 17 14 38 38 H 1.09002 * 109.47617 * 334.27662 * 19 17 14 39 39 H 1.09005 * 109.47005 * 214.27289 * 19 17 14 40 40 H 1.09003 * 109.52251 * 62.49936 * 22 20 19 41 41 H 1.09003 * 109.52692 * 302.30842 * 22 20 19 42 42 H 1.08996 * 109.50775 * 177.59567 * 23 22 20 43 43 H 1.08998 * 109.50281 * 297.71479 * 23 22 20 44 44 H 1.08995 * 109.46035 * 60.84062 * 24 23 22 45 45 H 1.09000 * 109.46038 * 180.80628 * 24 23 22 46 46 H 1.08995 * 109.47383 * 58.90138 * 26 25 24 47 47 H 1.09003 * 109.47378 * 178.90417 * 26 25 24 48 48 H 1.09002 * 109.46844 * 298.89873 * 26 25 24 49 49 H 1.08997 * 109.46143 * 58.27495 * 27 25 24 50 50 H 1.09000 * 109.46385 * 178.25474 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.5768 -1.6380 1.1341 6 6 1.7966 -0.1760 2.4796 7 7 1.1188 0.9449 2.5980 8 14 2.4400 -1.0439 4.0034 9 1 3.9199 -1.1429 3.9289 10 1 2.0562 -0.2714 5.2122 11 1 1.8559 -2.4071 4.0804 12 7 2.0184 -0.6907 -1.1961 13 6 1.6129 -2.0733 -1.4605 14 16 3.0290 0.0917 -2.2492 15 8 3.6576 -0.9180 -3.0268 16 8 3.7516 1.0431 -1.4800 17 7 2.0763 0.9585 -3.2902 18 6 1.6860 0.3813 -4.5789 19 6 1.6240 2.3024 -2.9224 20 6 2.5903 3.3407 -3.4961 21 1 3.6063 3.1086 -3.1769 22 6 2.2019 4.7336 -2.9929 23 6 3.1362 5.7728 -3.6188 24 6 3.0471 5.6787 -5.1438 25 7 3.4288 4.3280 -5.5753 26 6 3.4887 4.2407 -7.0404 27 6 2.5170 3.3172 -5.0246 28 1 -0.3633 -1.0216 0.1118 29 1 -0.3634 0.6075 0.8287 30 1 -0.3633 0.4139 -0.9407 31 1 0.9533 1.3210 3.4767 32 1 2.3257 -2.7559 -0.9978 33 1 0.6207 -2.2469 -1.0439 34 1 1.5904 -2.2459 -2.5364 35 1 2.4294 0.6399 -5.3329 36 1 1.6234 -0.7030 -4.4873 37 1 0.7148 0.7777 -4.8753 38 1 1.5970 2.3923 -1.8364 39 1 0.6259 2.4730 -3.3260 40 1 2.2945 4.7676 -1.9073 41 1 1.1725 4.9503 -3.2785 42 1 2.8378 6.7708 -3.2978 43 1 4.1608 5.5790 -3.3015 44 1 2.0252 5.8863 -5.4613 45 1 3.7218 6.4076 -5.5926 46 1 4.2122 4.9630 -7.4182 47 1 3.7924 3.2354 -7.3324 48 1 2.5056 4.4587 -7.4578 49 1 1.4977 3.5357 -5.3428 50 1 2.8069 2.3308 -5.3867 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407976988.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:15 Heat of formation + Delta-G solvation = -72.060966 kcal Electronic energy + Delta-G solvation = -29440.605257 eV Core-core repulsion = 25629.615250 eV Total energy + Delta-G solvation = -3810.990008 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.34140 -36.67886 -36.26081 -36.12137 -35.13611 -33.54967 -32.53169 -31.08639 -29.14806 -27.63621 -26.68566 -25.61993 -25.09404 -24.36049 -22.89216 -21.62205 -20.66680 -19.70009 -18.29297 -17.20629 -16.91010 -16.28726 -15.96176 -15.83397 -15.22691 -14.90772 -14.63897 -14.43066 -14.23116 -13.94646 -13.52838 -13.23907 -13.13847 -12.95931 -12.77741 -12.69846 -12.35481 -12.26813 -12.11219 -11.96052 -11.72508 -11.53499 -11.37900 -11.28980 -11.23308 -11.17533 -10.98304 -10.95466 -10.78431 -10.73945 -10.49170 -10.38792 -10.30826 -10.24244 -9.98516 -9.27515 -8.79921 -8.44849 -8.42616 -7.95008 -6.07156 -4.11881 1.21096 3.31908 3.36076 3.39758 3.49015 3.81792 4.11350 4.42159 4.70970 4.77245 4.82747 4.96715 5.00196 5.11197 5.22983 5.25687 5.27404 5.30984 5.37797 5.52053 5.53891 5.59006 5.64124 5.68003 5.68679 5.71240 5.81772 5.87649 5.91327 5.98442 6.14183 6.15865 6.17837 6.35025 6.37211 6.51061 6.60516 6.68193 6.77029 6.85235 6.97922 6.98294 7.00205 7.43082 7.61547 7.78428 7.99050 8.27269 8.89865 9.53690 11.00084 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.016560 B = 0.003872 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.436178 B = 7230.328394 C = 8123.297152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.270 3.730 3 H 0.057 0.943 4 C -0.521 4.521 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.992 5.992 13 C 0.109 3.891 14 S 2.777 3.223 15 O -0.996 6.996 16 O -0.966 6.966 17 N -1.013 6.013 18 C 0.097 3.903 19 C 0.133 3.867 20 C -0.106 4.106 21 H 0.090 0.910 22 C -0.116 4.116 23 C -0.117 4.117 24 C 0.056 3.944 25 N -0.545 5.545 26 C 0.026 3.974 27 C 0.059 3.941 28 H 0.036 0.964 29 H 0.081 0.919 30 H 0.013 0.987 31 H 0.263 0.737 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.030 0.970 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.022 0.978 49 H 0.030 0.970 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.391 6.265 -16.564 17.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.167 3.833 3 H 0.075 0.925 4 C -0.560 4.560 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.835 5.835 13 C -0.037 4.037 14 S 2.786 3.214 15 O -0.980 6.980 16 O -0.950 6.950 17 N -0.851 5.851 18 C -0.049 4.049 19 C 0.007 3.993 20 C -0.126 4.126 21 H 0.108 0.892 22 C -0.154 4.154 23 C -0.155 4.155 24 C -0.071 4.071 25 N -0.270 5.270 26 C -0.122 4.122 27 C -0.069 4.069 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.032 0.968 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.048 0.952 45 H 0.089 0.911 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.040 0.960 49 H 0.049 0.951 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.054 6.257 -16.281 17.474 hybrid contribution -0.991 -0.281 0.517 1.153 sum -2.045 5.976 -15.764 16.983 Atomic orbital electron populations 1.22070 0.98419 1.00491 0.99218 1.18687 0.91052 0.92816 0.80699 0.92492 1.21288 1.35796 1.08681 0.90272 0.92081 1.24897 0.94942 0.94950 0.98954 1.69878 1.39782 1.19184 1.24085 0.86582 0.79577 0.79455 0.81953 1.20126 1.21215 1.20264 1.57819 1.67630 1.21509 1.36517 1.21142 1.01231 0.82721 0.98626 1.02163 0.73891 0.72931 0.72377 1.93521 1.73961 1.59106 1.71395 1.93608 1.68981 1.62550 1.69826 1.58146 1.70803 1.26160 1.29960 1.21454 1.00123 0.98393 0.84884 1.21301 0.97016 0.80118 1.00902 1.21698 1.01787 0.94941 0.94194 0.89202 1.21575 0.98825 0.93814 1.01203 1.21578 1.01116 0.98760 0.94015 1.22098 0.98485 0.90080 0.96484 1.61880 1.51526 1.04425 1.09128 1.22334 0.99835 1.02574 0.87451 1.22324 0.93588 0.95738 0.95229 0.94488 0.90018 0.96829 0.92682 0.93390 0.91107 0.93250 0.92944 0.91345 0.91549 0.89239 0.90879 0.90744 0.92238 0.91493 0.90855 0.95185 0.91100 0.91533 0.91398 0.95966 0.95130 0.90080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.72 37.16 0.32 -2.79 16 2 C 0.27 6.49 2.48 -69.08 -0.17 6.32 16 3 H 0.06 1.50 6.76 -51.93 -0.35 1.15 16 4 C -0.52 -14.03 8.38 -34.44 -0.29 -14.32 16 5 H 0.06 1.65 7.66 -52.49 -0.40 1.25 16 6 C 0.07 1.77 5.34 -17.82 -0.10 1.67 16 7 N -0.89 -24.61 11.77 55.43 0.65 -23.96 16 8 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 N -0.99 -20.64 3.12 -115.86 -0.36 -21.00 16 13 C 0.11 1.96 9.63 59.84 0.58 2.53 16 14 S 2.78 55.55 5.94 -107.50 -0.64 54.91 16 15 O -1.00 -20.94 15.97 -57.17 -0.91 -21.85 16 16 O -0.97 -22.71 15.87 -57.17 -0.91 -23.61 16 17 N -1.01 -15.47 3.15 -121.76 -0.38 -15.85 16 18 C 0.10 1.16 9.17 59.85 0.55 1.71 16 19 C 0.13 1.89 4.85 -4.04 -0.02 1.87 16 20 C -0.11 -1.44 2.55 -90.54 -0.23 -1.67 16 21 H 0.09 1.49 7.96 -51.93 -0.41 1.07 16 22 C -0.12 -1.39 5.29 -26.61 -0.14 -1.53 16 23 C -0.12 -1.26 6.09 -26.65 -0.16 -1.42 16 24 C 0.06 0.58 5.46 -3.83 -0.02 0.56 16 25 N -0.55 -6.32 4.91 -242.96 -1.19 -7.52 16 26 C 0.03 0.24 9.59 60.06 0.58 0.82 16 27 C 0.06 0.70 4.27 -3.83 -0.02 0.68 16 28 H 0.04 0.78 6.86 -51.93 -0.36 0.42 16 29 H 0.08 1.97 6.65 -51.93 -0.35 1.62 16 30 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.21 6.42 -51.93 -0.33 0.87 16 34 H 0.05 0.75 7.65 -51.93 -0.40 0.35 16 35 H 0.05 0.58 6.29 -51.93 -0.33 0.25 16 36 H 0.07 0.81 7.67 -51.93 -0.40 0.41 16 37 H 0.07 0.62 7.93 -51.93 -0.41 0.21 16 38 H 0.09 1.46 7.40 -51.93 -0.38 1.08 16 39 H 0.07 0.86 7.95 -51.93 -0.41 0.44 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.07 0.65 8.12 -51.93 -0.42 0.22 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.60 8.11 -51.93 -0.42 0.18 16 48 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 49 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.08 0.98 5.19 -51.93 -0.27 0.71 16 LS Contribution 391.76 15.07 5.90 5.90 Total: -1.00 -31.67 391.76 -10.99 -42.66 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -9.01 Total: -0.31 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 0.88 Total: -5.58 kcal Atomic # 7 Polarization: -67.04 SS G_CDS: -1.29 Total: -68.33 kcal Atomic # 8 Polarization: -43.65 SS G_CDS: -1.82 Total: -45.47 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 55.55 SS G_CDS: -0.64 Total: 54.91 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.67 -10.99 -42.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407976988.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.404 kcal (2) G-P(sol) polarization free energy of solvation -31.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds