Wall clock time and date at job start Tue Mar 31 2020 17:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46915 * 2 1 4 4 C 1.50701 * 109.46885 * 119.99348 * 2 1 3 5 5 H 1.08002 * 119.99764 * 114.42208 * 4 2 1 6 6 C 1.37878 * 120.00651 * 294.42356 * 4 2 1 7 7 N 1.31521 * 119.99407 * 0.85936 * 6 4 2 8 8 Si 1.86797 * 120.00444 * 180.86094 * 6 4 2 9 9 H 1.48504 * 109.46941 * 59.99765 * 8 6 4 10 10 H 1.48497 * 109.46965 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46883 * 299.99901 * 8 6 4 12 12 N 1.46501 * 109.47480 * 239.99725 * 2 1 3 13 13 C 1.46492 * 120.00041 * 302.90304 * 12 2 1 14 14 S 1.65597 * 119.99569 * 122.90498 * 12 2 1 15 15 O 1.42101 * 106.39746 * 161.54581 * 14 12 2 16 16 O 1.42094 * 106.40759 * 28.62354 * 14 12 2 17 17 N 1.65607 * 107.21545 * 275.08097 * 14 12 2 18 18 C 1.46497 * 120.00023 * 265.65029 * 17 14 12 19 19 C 1.46495 * 119.99554 * 85.65754 * 17 14 12 20 20 C 1.53004 * 109.47597 * 94.27896 * 19 17 14 21 21 H 1.09005 * 109.53271 * 305.90655 * 20 19 17 22 22 C 1.53111 * 109.50565 * 185.80645 * 20 19 17 23 23 C 1.53122 * 109.16363 * 182.40223 * 22 20 19 24 24 C 1.53043 * 109.27479 * 57.65495 * 23 22 20 25 25 N 1.46847 * 109.52372 * 300.82228 * 24 23 22 26 26 C 1.46894 * 110.99980 * 185.84234 * 25 24 23 27 27 C 1.46846 * 111.19717 * 61.74229 * 25 24 23 28 28 H 1.09005 * 109.46869 * 186.24441 * 1 2 3 29 29 H 1.08991 * 109.47817 * 306.24580 * 1 2 3 30 30 H 1.09004 * 109.46910 * 66.25298 * 1 2 3 31 31 H 0.97002 * 119.99663 * 180.02562 * 7 6 4 32 32 H 1.09005 * 109.47354 * 270.00332 * 13 12 2 33 33 H 1.09004 * 109.47203 * 30.00060 * 13 12 2 34 34 H 1.08994 * 109.47478 * 149.99860 * 13 12 2 35 35 H 1.09000 * 109.47647 * 270.00213 * 18 17 14 36 36 H 1.08998 * 109.46912 * 30.00516 * 18 17 14 37 37 H 1.09005 * 109.46795 * 150.00415 * 18 17 14 38 38 H 1.09002 * 109.47617 * 334.27662 * 19 17 14 39 39 H 1.09005 * 109.47005 * 214.27289 * 19 17 14 40 40 H 1.09003 * 109.52251 * 62.49936 * 22 20 19 41 41 H 1.09003 * 109.52692 * 302.30842 * 22 20 19 42 42 H 1.08996 * 109.50775 * 177.59567 * 23 22 20 43 43 H 1.08998 * 109.50281 * 297.71479 * 23 22 20 44 44 H 1.08995 * 109.46035 * 60.84062 * 24 23 22 45 45 H 1.09000 * 109.46038 * 180.80628 * 24 23 22 46 46 H 1.08995 * 109.47383 * 58.90138 * 26 25 24 47 47 H 1.09003 * 109.47378 * 178.90417 * 26 25 24 48 48 H 1.09002 * 109.46844 * 298.89873 * 26 25 24 49 49 H 1.08997 * 109.46143 * 58.27495 * 27 25 24 50 50 H 1.09000 * 109.46385 * 178.25474 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.5768 -1.6380 1.1341 6 6 1.7966 -0.1760 2.4796 7 7 1.1188 0.9449 2.5980 8 14 2.4400 -1.0439 4.0034 9 1 3.9199 -1.1429 3.9289 10 1 2.0562 -0.2714 5.2122 11 1 1.8559 -2.4071 4.0804 12 7 2.0184 -0.6907 -1.1961 13 6 1.6129 -2.0733 -1.4605 14 16 3.0290 0.0917 -2.2492 15 8 3.6576 -0.9180 -3.0268 16 8 3.7516 1.0431 -1.4800 17 7 2.0763 0.9585 -3.2902 18 6 1.6860 0.3813 -4.5789 19 6 1.6240 2.3024 -2.9224 20 6 2.5903 3.3407 -3.4961 21 1 3.6063 3.1086 -3.1769 22 6 2.2019 4.7336 -2.9929 23 6 3.1362 5.7728 -3.6188 24 6 3.0471 5.6787 -5.1438 25 7 3.4288 4.3280 -5.5753 26 6 3.4887 4.2407 -7.0404 27 6 2.5170 3.3172 -5.0246 28 1 -0.3633 -1.0216 0.1118 29 1 -0.3634 0.6075 0.8287 30 1 -0.3633 0.4139 -0.9407 31 1 0.9533 1.3210 3.4767 32 1 2.3257 -2.7559 -0.9978 33 1 0.6207 -2.2469 -1.0439 34 1 1.5904 -2.2459 -2.5364 35 1 2.4294 0.6399 -5.3329 36 1 1.6234 -0.7030 -4.4873 37 1 0.7148 0.7777 -4.8753 38 1 1.5970 2.3923 -1.8364 39 1 0.6259 2.4730 -3.3260 40 1 2.2945 4.7676 -1.9073 41 1 1.1725 4.9503 -3.2785 42 1 2.8378 6.7708 -3.2978 43 1 4.1608 5.5790 -3.3015 44 1 2.0252 5.8863 -5.4613 45 1 3.7218 6.4076 -5.5926 46 1 4.2122 4.9630 -7.4182 47 1 3.7924 3.2354 -7.3324 48 1 2.5056 4.4587 -7.4578 49 1 1.4977 3.5357 -5.3428 50 1 2.8069 2.3308 -5.3867 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407976988.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:14 Heat of formation + Delta-G solvation = -94.618982 kcal Electronic energy + Delta-G solvation = -29441.583446 eV Core-core repulsion = 25629.615250 eV Total energy + Delta-G solvation = -3811.968197 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.27582 -38.35472 -37.87761 -37.33808 -36.83446 -34.49986 -34.47308 -32.04276 -30.95188 -28.62188 -27.49975 -27.29742 -26.95517 -25.46322 -23.76661 -22.68962 -22.41982 -20.64226 -19.81151 -18.78809 -18.53784 -18.07191 -17.32252 -16.93446 -16.61832 -16.16190 -15.79721 -15.45412 -15.37970 -15.19253 -14.96183 -14.84765 -14.47257 -14.11065 -14.00394 -13.82162 -13.69943 -13.44269 -13.31564 -13.17889 -13.14125 -12.98625 -12.96446 -12.87261 -12.80388 -12.61846 -12.53722 -12.28435 -12.25029 -12.15229 -11.92421 -11.84948 -11.66012 -11.44403 -11.20589 -11.13874 -10.51799 -9.97603 -9.64559 -9.22145 -8.12742 -6.24125 -0.34458 1.41427 1.44135 1.50598 2.04643 2.42850 2.59160 3.01607 3.17197 3.37981 3.72870 3.81057 3.88491 4.01414 4.13803 4.21027 4.34796 4.42181 4.51642 4.56739 4.57721 4.64068 4.67055 4.72227 4.74739 4.78538 4.81507 4.83529 4.93194 4.96765 5.01135 5.03201 5.04379 5.06792 5.09706 5.15280 5.16176 5.21767 5.38030 5.47044 5.58595 5.62865 5.79697 5.88163 6.13726 6.17337 6.21017 6.29278 6.82467 7.44184 8.92649 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.016560 B = 0.003872 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.436178 B = 7230.328394 C = 8123.297152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.276 3.724 3 H 0.026 0.974 4 C -0.542 4.542 5 H 0.052 0.948 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.950 3.050 9 H -0.282 1.282 10 H -0.280 1.280 11 H -0.266 1.266 12 N -1.000 6.000 13 C 0.103 3.897 14 S 2.787 3.213 15 O -1.009 7.009 16 O -1.012 7.012 17 N -1.003 6.003 18 C 0.087 3.913 19 C 0.132 3.868 20 C -0.104 4.104 21 H 0.049 0.951 22 C -0.116 4.116 23 C -0.116 4.116 24 C 0.059 3.941 25 N -0.570 5.570 26 C 0.027 3.973 27 C 0.065 3.935 28 H 0.042 0.958 29 H 0.056 0.944 30 H 0.043 0.957 31 H 0.265 0.735 32 H 0.037 0.963 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.060 0.940 39 H 0.109 0.891 40 H 0.054 0.946 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.052 0.948 44 H 0.042 0.958 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.034 0.966 49 H 0.050 0.950 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.976 6.364 -18.611 20.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.172 3.828 3 H 0.043 0.957 4 C -0.582 4.582 5 H 0.071 0.929 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.776 3.224 9 H -0.207 1.207 10 H -0.205 1.205 11 H -0.191 1.191 12 N -0.841 5.841 13 C -0.043 4.043 14 S 2.797 3.203 15 O -0.993 6.993 16 O -0.996 6.996 17 N -0.844 5.844 18 C -0.058 4.058 19 C 0.006 3.994 20 C -0.125 4.125 21 H 0.068 0.932 22 C -0.154 4.154 23 C -0.154 4.154 24 C -0.069 4.069 25 N -0.295 5.295 26 C -0.120 4.120 27 C -0.063 4.063 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.078 0.922 39 H 0.127 0.873 40 H 0.073 0.927 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.100 0.900 46 H 0.093 0.907 47 H 0.086 0.914 48 H 0.052 0.948 49 H 0.068 0.932 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.637 6.331 -18.342 19.582 hybrid contribution -0.462 -0.288 1.070 1.201 sum -3.098 6.042 -17.271 18.558 Atomic orbital electron populations 1.21843 0.96572 1.00520 0.99759 1.18376 0.92271 0.91129 0.81007 0.95668 1.21636 1.35932 1.08690 0.91914 0.92945 1.25593 0.95257 0.95659 1.01489 1.69979 1.40440 1.20037 1.24595 0.85741 0.78529 0.79076 0.79084 1.20742 1.20479 1.19078 1.57721 1.67555 1.22755 1.36089 1.21347 1.01346 0.80958 1.00650 1.01582 0.73961 0.72431 0.72302 1.93489 1.74660 1.59739 1.71393 1.93546 1.70843 1.63738 1.71428 1.57738 1.70268 1.26075 1.30313 1.21801 1.02278 0.98692 0.82990 1.21417 0.98942 0.79511 0.99525 1.21620 0.99326 0.95578 0.95976 0.93234 1.21577 1.00326 0.93357 1.00121 1.21581 0.99596 0.99285 0.94936 1.22106 0.99486 0.89735 0.95542 1.61852 1.51963 1.04947 1.10688 1.22362 1.00786 1.02950 0.85947 1.22218 0.94732 0.95956 0.93366 0.93896 0.92493 0.93835 0.92636 0.94376 0.90131 0.90199 0.91973 0.91061 0.88001 0.92172 0.87262 0.92676 0.90113 0.89610 0.92955 0.93936 0.89960 0.90680 0.91403 0.94765 0.93214 0.90378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.52 8.72 71.98 0.63 -4.89 16 2 C 0.28 13.51 2.48 44.25 0.11 13.62 16 3 H 0.03 1.40 6.76 -2.39 -0.02 1.39 16 4 C -0.54 -29.80 8.38 25.60 0.21 -29.58 16 5 H 0.05 2.89 7.66 -2.91 -0.02 2.87 16 6 C 0.02 1.12 5.34 84.65 0.45 1.57 16 7 N -0.91 -51.31 11.77 21.45 0.25 -51.05 16 8 Si 0.95 43.89 29.54 68.60 2.03 45.91 16 9 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 12 N -1.00 -41.67 3.12 -520.46 -1.62 -43.30 16 13 C 0.10 3.57 9.63 127.77 1.23 4.80 16 14 S 2.79 112.94 5.94 -56.49 -0.34 112.60 16 15 O -1.01 -42.24 15.97 -128.00 -2.04 -44.29 16 16 O -1.01 -50.07 15.87 -128.00 -2.03 -52.10 16 17 N -1.00 -29.56 3.15 -539.13 -1.70 -31.25 16 18 C 0.09 1.81 9.17 127.77 1.17 2.98 16 19 C 0.13 3.64 4.85 86.38 0.42 4.06 16 20 C -0.10 -2.82 2.55 -10.74 -0.03 -2.85 16 21 H 0.05 1.73 7.96 -2.38 -0.02 1.71 16 22 C -0.12 -2.72 5.29 30.67 0.16 -2.56 16 23 C -0.12 -2.42 6.09 30.65 0.19 -2.23 16 24 C 0.06 1.07 5.46 86.33 0.47 1.55 16 25 N -0.57 -12.18 4.91 -922.60 -4.53 -16.71 16 26 C 0.03 0.43 9.59 127.69 1.22 1.66 16 27 C 0.06 1.41 4.27 86.33 0.37 1.77 16 28 H 0.04 1.76 6.86 -2.38 -0.02 1.75 16 29 H 0.06 2.75 6.65 -2.39 -0.02 2.74 16 30 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 32 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.08 2.62 6.42 -2.39 -0.02 2.60 16 34 H 0.08 2.26 7.65 -2.39 -0.02 2.24 16 35 H 0.06 1.20 6.29 -2.39 -0.02 1.19 16 36 H 0.07 1.47 7.67 -2.39 -0.02 1.45 16 37 H 0.10 1.44 7.93 -2.38 -0.02 1.42 16 38 H 0.06 2.03 7.40 -2.39 -0.02 2.02 16 39 H 0.11 2.22 7.95 -2.38 -0.02 2.20 16 40 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.08 1.31 8.12 -2.39 -0.02 1.29 16 46 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.07 1.06 8.11 -2.39 -0.02 1.04 16 48 H 0.03 0.46 8.14 -2.39 -0.02 0.45 16 49 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.08 1.72 5.19 -2.39 -0.01 1.71 16 Total: -1.00 -70.45 391.76 -2.48 -72.93 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.89 Total: 17.35 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: 6.61 Total: -10.09 kcal Atomic # 7 Polarization: -134.72 SS G_CDS: -7.60 Total: -142.32 kcal Atomic # 8 Polarization: -92.31 SS G_CDS: -4.08 Total: -96.39 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: 112.94 SS G_CDS: -0.34 Total: 112.60 kcal Total: -70.45 -2.48 -72.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407976988.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.687 kcal (2) G-P(sol) polarization free energy of solvation -70.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds