Wall clock time and date at job start Tue Mar 31 2020 17:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47105 * 2 1 4 4 C 1.50690 * 109.47281 * 120.00665 * 2 1 3 5 5 H 1.08001 * 120.00404 * 119.99819 * 4 2 1 6 6 C 1.37880 * 119.99793 * 299.99473 * 4 2 1 7 7 N 1.31513 * 120.00242 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99970 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47147 * 90.00310 * 8 6 4 10 10 H 1.48500 * 109.47021 * 210.00285 * 8 6 4 11 11 H 1.48504 * 109.46785 * 330.00153 * 8 6 4 12 12 N 1.46504 * 109.46884 * 240.00370 * 2 1 3 13 13 C 1.46500 * 120.00166 * 304.46787 * 12 2 1 14 14 S 1.65603 * 119.99846 * 124.46136 * 12 2 1 15 15 O 1.42101 * 106.39828 * 151.87874 * 14 12 2 16 16 O 1.42101 * 106.40188 * 18.95850 * 14 12 2 17 17 N 1.65595 * 107.22212 * 265.41808 * 14 12 2 18 18 C 1.46505 * 119.99999 * 94.70011 * 17 14 12 19 19 C 1.46499 * 120.00026 * 274.70078 * 17 14 12 20 20 C 1.52994 * 109.47473 * 266.62209 * 19 17 14 21 21 H 1.09000 * 109.49948 * 54.46870 * 20 19 17 22 22 C 1.53113 * 109.53832 * 174.56950 * 20 19 17 23 23 C 1.53098 * 109.15560 * 177.61661 * 22 20 19 24 24 C 1.53037 * 109.29113 * 302.34002 * 23 22 20 25 25 N 1.46843 * 109.51583 * 59.17938 * 24 23 22 26 26 C 1.46908 * 110.99844 * 174.16741 * 25 24 23 27 27 C 1.46840 * 111.20331 * 298.26707 * 25 24 23 28 28 H 1.09004 * 109.46769 * 305.77318 * 1 2 3 29 29 H 1.08997 * 109.47365 * 65.76961 * 1 2 3 30 30 H 1.08994 * 109.46902 * 185.77350 * 1 2 3 31 31 H 0.96994 * 120.00113 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46324 * 269.99935 * 13 12 2 33 33 H 1.08996 * 109.47090 * 29.99745 * 13 12 2 34 34 H 1.08996 * 109.47137 * 150.00151 * 13 12 2 35 35 H 1.09001 * 109.47131 * 270.00253 * 18 17 14 36 36 H 1.08998 * 109.47028 * 30.00209 * 18 17 14 37 37 H 1.09001 * 109.46990 * 150.00281 * 18 17 14 38 38 H 1.09009 * 109.46905 * 146.61992 * 19 17 14 39 39 H 1.09004 * 109.47267 * 26.62543 * 19 17 14 40 40 H 1.08999 * 109.51983 * 297.51793 * 22 20 19 41 41 H 1.08995 * 109.52553 * 57.64745 * 22 20 19 42 42 H 1.08996 * 109.49033 * 182.39825 * 23 22 20 43 43 H 1.09007 * 109.50824 * 62.28936 * 23 22 20 44 44 H 1.09005 * 109.45735 * 299.16977 * 24 23 22 45 45 H 1.09005 * 109.46359 * 179.19545 * 24 23 22 46 46 H 1.08992 * 109.47101 * 56.05267 * 26 25 24 47 47 H 1.09000 * 109.46655 * 176.04768 * 26 25 24 48 48 H 1.08999 * 109.46906 * 296.04454 * 26 25 24 49 49 H 1.08994 * 109.46564 * 181.75280 * 27 25 24 50 50 H 1.09006 * 109.46135 * 301.72933 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1311 6 6 1.6994 -0.2395 2.4826 7 7 0.9429 0.8295 2.6034 8 14 2.3227 -1.1198 4.0078 9 1 3.6306 -0.5443 4.4117 10 1 1.3446 -0.9493 5.1122 11 1 2.4881 -2.5656 3.7119 12 7 2.0183 -0.6906 -1.1963 13 6 1.5855 -2.0614 -1.4787 14 16 3.0594 0.0785 -2.2293 15 8 3.8374 -0.9385 -2.8454 16 8 3.6277 1.1560 -1.4976 17 7 2.1448 0.7596 -3.4300 18 6 1.7203 2.1578 -3.3238 19 6 1.7601 -0.0360 -4.5984 20 6 2.7850 0.1699 -5.7156 21 1 3.7833 -0.0527 -5.3390 22 6 2.4606 -0.7621 -6.8862 23 6 3.4550 -0.5069 -8.0220 24 6 3.3828 0.9647 -8.4360 25 7 3.7016 1.8151 -7.2820 26 6 3.7776 3.2286 -7.6748 27 6 2.7322 1.6220 -6.1961 28 1 -0.3633 0.6008 0.8338 29 1 -0.3634 0.4217 -0.9371 30 1 -0.3633 -1.0224 0.1034 31 1 0.7084 1.1606 3.4844 32 1 2.2771 -2.7638 -1.0134 33 1 0.5845 -2.2165 -1.0764 34 1 1.5731 -2.2237 -2.5565 35 1 0.7585 2.2077 -2.8133 36 1 2.4620 2.7206 -2.7571 37 1 1.6245 2.5852 -4.3219 38 1 0.7761 0.2801 -4.9452 39 1 1.7275 -1.0907 -4.3252 40 1 2.5396 -1.7988 -6.5591 41 1 1.4473 -0.5671 -7.2372 42 1 3.2030 -1.1375 -8.8746 43 1 4.4639 -0.7402 -7.6818 44 1 2.3773 1.1937 -8.7891 45 1 4.1001 1.1528 -9.2350 46 1 2.8426 3.5243 -8.1505 47 1 3.9453 3.8429 -6.7902 48 1 4.6014 3.3673 -8.3750 49 1 2.9767 2.2876 -5.3684 50 1 1.7297 1.8479 -6.5598 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407976990.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:18 Heat of formation + Delta-G solvation = -69.951777 kcal Electronic energy + Delta-G solvation = -29221.861207 eV Core-core repulsion = 25410.962661 eV Total energy + Delta-G solvation = -3810.898546 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.46415 -36.68346 -36.30123 -36.11863 -35.14788 -33.64665 -32.55650 -31.16354 -29.08785 -27.68765 -26.75509 -25.65110 -25.08330 -24.38808 -23.01589 -21.70443 -20.64288 -19.83329 -18.28734 -17.21921 -16.89971 -16.34532 -16.09448 -15.78447 -15.34253 -14.93143 -14.72959 -14.52566 -14.25832 -13.90209 -13.46413 -13.32234 -13.24435 -13.01728 -12.78112 -12.72159 -12.38664 -12.36672 -12.15905 -11.99808 -11.73224 -11.54289 -11.37857 -11.33056 -11.31824 -11.20484 -11.04634 -10.95990 -10.83916 -10.77711 -10.54448 -10.39804 -10.34022 -10.22518 -9.98035 -9.26502 -8.80593 -8.49996 -8.43298 -7.93744 -6.05595 -4.11544 1.20699 3.30821 3.37082 3.40020 3.47746 3.73495 4.09858 4.42264 4.58606 4.66489 4.73466 4.85504 4.94206 5.08793 5.13376 5.20328 5.23985 5.26218 5.31520 5.41266 5.49402 5.50101 5.57534 5.60542 5.66298 5.68243 5.72585 5.76603 5.84300 6.01034 6.03282 6.04896 6.13694 6.19361 6.37590 6.40193 6.62570 6.70838 6.81649 6.84686 6.89779 6.92176 7.03917 7.48305 7.65574 7.81436 8.04497 8.29194 8.90684 9.54193 11.00438 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.025975 B = 0.003208 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.693073 B = 8725.871704 C = 8998.408785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.521 4.521 5 H 0.061 0.939 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.991 5.991 13 C 0.110 3.890 14 S 2.777 3.223 15 O -0.990 6.990 16 O -0.972 6.972 17 N -1.014 6.014 18 C 0.083 3.917 19 C 0.135 3.865 20 C -0.108 4.108 21 H 0.091 0.909 22 C -0.114 4.114 23 C -0.117 4.117 24 C 0.056 3.944 25 N -0.545 5.545 26 C 0.025 3.975 27 C 0.058 3.942 28 H 0.089 0.911 29 H 0.010 0.990 30 H 0.035 0.965 31 H 0.263 0.737 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.045 0.955 35 H 0.055 0.945 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.030 0.970 45 H 0.071 0.929 46 H 0.023 0.977 47 H 0.069 0.931 48 H 0.067 0.933 49 H 0.083 0.917 50 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.466 0.922 -20.825 20.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.165 3.835 3 H 0.077 0.923 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.834 5.834 13 C -0.037 4.037 14 S 2.787 3.213 15 O -0.974 6.974 16 O -0.956 6.956 17 N -0.851 5.851 18 C -0.063 4.063 19 C 0.008 3.992 20 C -0.128 4.128 21 H 0.109 0.891 22 C -0.153 4.153 23 C -0.155 4.155 24 C -0.072 4.072 25 N -0.269 5.269 26 C -0.123 4.123 27 C -0.070 4.070 28 H 0.108 0.892 29 H 0.029 0.971 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.049 0.951 45 H 0.090 0.910 46 H 0.041 0.959 47 H 0.087 0.913 48 H 0.086 0.914 49 H 0.102 0.898 50 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.155 0.977 -20.437 20.461 hybrid contribution -1.009 -0.170 0.542 1.158 sum -1.164 0.806 -19.896 19.946 Atomic orbital electron populations 1.22080 0.98211 1.00526 0.99519 1.18720 0.91341 0.92986 0.80429 0.92325 1.21366 1.31605 1.12974 0.90150 0.92038 1.24901 0.94938 0.95010 0.98970 1.69866 1.36588 1.22774 1.23733 0.86512 0.78691 0.80009 0.82303 1.20521 1.21185 1.19867 1.57786 1.66163 1.22528 1.36901 1.21155 1.01236 0.83232 0.98060 1.02111 0.73844 0.73136 0.72205 1.93538 1.67316 1.59099 1.77439 1.93580 1.75613 1.55349 1.71036 1.58122 1.72353 1.20094 1.34561 1.21636 1.01023 0.81220 1.02394 1.21212 0.97558 0.95206 0.85221 1.21730 1.01588 0.94343 0.95163 0.89091 1.21562 0.98815 0.99795 0.95102 1.21572 1.00740 0.95016 0.98154 1.22096 0.98961 0.93603 0.92535 1.61882 1.49797 1.06323 1.08934 1.22350 1.00146 0.88611 1.01170 1.22343 0.93005 0.97659 0.93981 0.89241 0.97053 0.94630 0.92745 0.93246 0.91031 0.93651 0.92650 0.89997 0.91253 0.90787 0.90227 0.91173 0.92214 0.91529 0.90850 0.95149 0.91019 0.95860 0.91263 0.91441 0.89831 0.95029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.62 37.16 0.32 -2.92 16 2 C 0.27 6.59 2.61 -69.08 -0.18 6.41 16 3 H 0.06 1.59 6.87 -51.93 -0.36 1.24 16 4 C -0.52 -14.23 8.44 -34.44 -0.29 -14.52 16 5 H 0.06 1.68 7.78 -52.49 -0.41 1.28 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.87 11.38 55.43 0.63 -24.24 16 8 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 N -0.99 -20.76 3.12 -115.86 -0.36 -21.12 16 13 C 0.11 1.95 9.74 59.85 0.58 2.53 16 14 S 2.78 55.54 5.98 -107.50 -0.64 54.90 16 15 O -0.99 -20.72 16.24 -57.17 -0.93 -21.65 16 16 O -0.97 -22.96 15.15 -57.17 -0.87 -23.83 16 17 N -1.01 -15.27 3.13 -121.75 -0.38 -15.65 16 18 C 0.08 1.10 9.75 59.85 0.58 1.69 16 19 C 0.13 1.65 4.83 -4.05 -0.02 1.63 16 20 C -0.11 -1.29 2.55 -90.54 -0.23 -1.52 16 21 H 0.09 1.35 7.83 -51.93 -0.41 0.94 16 22 C -0.11 -1.11 5.29 -26.62 -0.14 -1.25 16 23 C -0.12 -1.06 6.09 -26.66 -0.16 -1.22 16 24 C 0.06 0.51 5.46 -3.84 -0.02 0.49 16 25 N -0.55 -5.89 4.91 -242.96 -1.19 -7.09 16 26 C 0.03 0.22 9.62 60.07 0.58 0.80 16 27 C 0.06 0.64 3.67 -3.83 -0.01 0.62 16 28 H 0.09 2.22 6.25 -51.93 -0.32 1.90 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.03 0.76 6.81 -51.93 -0.35 0.41 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 1.22 6.33 -51.93 -0.33 0.89 16 34 H 0.04 0.66 6.80 -51.93 -0.35 0.31 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 1.20 7.00 -51.93 -0.36 0.84 16 37 H 0.07 0.72 5.59 -51.93 -0.29 0.43 16 38 H 0.07 0.74 8.10 -51.92 -0.42 0.32 16 39 H 0.08 0.97 6.69 -51.93 -0.35 0.62 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 46 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 47 H 0.07 0.61 8.02 -51.93 -0.42 0.19 16 48 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.08 0.99 5.59 -51.93 -0.29 0.70 16 50 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 388.40 15.07 5.85 5.85 Total: -1.00 -32.05 388.40 -10.87 -42.92 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -8.87 Total: -0.81 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: 0.91 Total: -5.60 kcal Atomic # 7 Polarization: -66.79 SS G_CDS: -1.31 Total: -68.09 kcal Atomic # 8 Polarization: -43.68 SS G_CDS: -1.79 Total: -45.47 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 55.54 SS G_CDS: -0.64 Total: 54.90 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.05 -10.87 -42.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407976990.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.034 kcal (2) G-P(sol) polarization free energy of solvation -32.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds