Wall clock time and date at job start Tue Mar 31 2020 17:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47105 * 2 1 4 4 C 1.50690 * 109.47281 * 120.00665 * 2 1 3 5 5 H 1.08001 * 120.00404 * 119.99819 * 4 2 1 6 6 C 1.37880 * 119.99793 * 299.99473 * 4 2 1 7 7 N 1.31513 * 120.00242 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99970 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47147 * 90.00310 * 8 6 4 10 10 H 1.48500 * 109.47021 * 210.00285 * 8 6 4 11 11 H 1.48504 * 109.46785 * 330.00153 * 8 6 4 12 12 N 1.46504 * 109.46884 * 240.00370 * 2 1 3 13 13 C 1.46500 * 120.00166 * 304.46787 * 12 2 1 14 14 S 1.65603 * 119.99846 * 124.46136 * 12 2 1 15 15 O 1.42101 * 106.39828 * 151.87874 * 14 12 2 16 16 O 1.42101 * 106.40188 * 18.95850 * 14 12 2 17 17 N 1.65595 * 107.22212 * 265.41808 * 14 12 2 18 18 C 1.46505 * 119.99999 * 94.70011 * 17 14 12 19 19 C 1.46499 * 120.00026 * 274.70078 * 17 14 12 20 20 C 1.52994 * 109.47473 * 266.62209 * 19 17 14 21 21 H 1.09000 * 109.49948 * 54.46870 * 20 19 17 22 22 C 1.53113 * 109.53832 * 174.56950 * 20 19 17 23 23 C 1.53098 * 109.15560 * 177.61661 * 22 20 19 24 24 C 1.53037 * 109.29113 * 302.34002 * 23 22 20 25 25 N 1.46843 * 109.51583 * 59.17938 * 24 23 22 26 26 C 1.46908 * 110.99844 * 174.16741 * 25 24 23 27 27 C 1.46840 * 111.20331 * 298.26707 * 25 24 23 28 28 H 1.09004 * 109.46769 * 305.77318 * 1 2 3 29 29 H 1.08997 * 109.47365 * 65.76961 * 1 2 3 30 30 H 1.08994 * 109.46902 * 185.77350 * 1 2 3 31 31 H 0.96994 * 120.00113 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46324 * 269.99935 * 13 12 2 33 33 H 1.08996 * 109.47090 * 29.99745 * 13 12 2 34 34 H 1.08996 * 109.47137 * 150.00151 * 13 12 2 35 35 H 1.09001 * 109.47131 * 270.00253 * 18 17 14 36 36 H 1.08998 * 109.47028 * 30.00209 * 18 17 14 37 37 H 1.09001 * 109.46990 * 150.00281 * 18 17 14 38 38 H 1.09009 * 109.46905 * 146.61992 * 19 17 14 39 39 H 1.09004 * 109.47267 * 26.62543 * 19 17 14 40 40 H 1.08999 * 109.51983 * 297.51793 * 22 20 19 41 41 H 1.08995 * 109.52553 * 57.64745 * 22 20 19 42 42 H 1.08996 * 109.49033 * 182.39825 * 23 22 20 43 43 H 1.09007 * 109.50824 * 62.28936 * 23 22 20 44 44 H 1.09005 * 109.45735 * 299.16977 * 24 23 22 45 45 H 1.09005 * 109.46359 * 179.19545 * 24 23 22 46 46 H 1.08992 * 109.47101 * 56.05267 * 26 25 24 47 47 H 1.09000 * 109.46655 * 176.04768 * 26 25 24 48 48 H 1.08999 * 109.46906 * 296.04454 * 26 25 24 49 49 H 1.08994 * 109.46564 * 181.75280 * 27 25 24 50 50 H 1.09006 * 109.46135 * 301.72933 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1311 6 6 1.6994 -0.2395 2.4826 7 7 0.9429 0.8295 2.6034 8 14 2.3227 -1.1198 4.0078 9 1 3.6306 -0.5443 4.4117 10 1 1.3446 -0.9493 5.1122 11 1 2.4881 -2.5656 3.7119 12 7 2.0183 -0.6906 -1.1963 13 6 1.5855 -2.0614 -1.4787 14 16 3.0594 0.0785 -2.2293 15 8 3.8374 -0.9385 -2.8454 16 8 3.6277 1.1560 -1.4976 17 7 2.1448 0.7596 -3.4300 18 6 1.7203 2.1578 -3.3238 19 6 1.7601 -0.0360 -4.5984 20 6 2.7850 0.1699 -5.7156 21 1 3.7833 -0.0527 -5.3390 22 6 2.4606 -0.7621 -6.8862 23 6 3.4550 -0.5069 -8.0220 24 6 3.3828 0.9647 -8.4360 25 7 3.7016 1.8151 -7.2820 26 6 3.7776 3.2286 -7.6748 27 6 2.7322 1.6220 -6.1961 28 1 -0.3633 0.6008 0.8338 29 1 -0.3634 0.4217 -0.9371 30 1 -0.3633 -1.0224 0.1034 31 1 0.7084 1.1606 3.4844 32 1 2.2771 -2.7638 -1.0134 33 1 0.5845 -2.2165 -1.0764 34 1 1.5731 -2.2237 -2.5565 35 1 0.7585 2.2077 -2.8133 36 1 2.4620 2.7206 -2.7571 37 1 1.6245 2.5852 -4.3219 38 1 0.7761 0.2801 -4.9452 39 1 1.7275 -1.0907 -4.3252 40 1 2.5396 -1.7988 -6.5591 41 1 1.4473 -0.5671 -7.2372 42 1 3.2030 -1.1375 -8.8746 43 1 4.4639 -0.7402 -7.6818 44 1 2.3773 1.1937 -8.7891 45 1 4.1001 1.1528 -9.2350 46 1 2.8426 3.5243 -8.1505 47 1 3.9453 3.8429 -6.7902 48 1 4.6014 3.3673 -8.3750 49 1 2.9767 2.2876 -5.3684 50 1 1.7297 1.8479 -6.5598 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407976990.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:17 Heat of formation + Delta-G solvation = -92.872053 kcal Electronic energy + Delta-G solvation = -29222.855105 eV Core-core repulsion = 25410.962661 eV Total energy + Delta-G solvation = -3811.892444 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.28820 -38.36060 -37.88338 -37.34760 -36.83843 -34.53130 -34.46623 -32.02272 -30.91526 -28.65922 -27.49857 -27.35289 -26.95946 -25.46138 -23.78199 -22.63111 -22.43921 -20.63477 -19.80617 -18.72760 -18.56413 -18.15165 -17.36185 -16.82408 -16.68937 -16.17965 -15.80646 -15.48029 -15.34431 -15.20815 -14.92713 -14.84500 -14.48369 -14.10950 -13.97706 -13.78684 -13.75611 -13.51303 -13.37021 -13.16118 -13.11393 -13.02352 -12.98296 -12.84310 -12.82591 -12.58652 -12.55519 -12.30191 -12.22012 -12.11157 -11.97671 -11.79513 -11.62886 -11.39625 -11.16930 -11.15125 -10.51768 -9.97482 -9.64332 -9.23278 -8.12460 -6.25710 -0.34848 1.40886 1.43194 1.52119 2.04742 2.41955 2.58572 3.00544 3.15712 3.37977 3.72149 3.82539 3.90595 4.02323 4.14853 4.18157 4.34119 4.41568 4.51389 4.54015 4.57183 4.62635 4.65708 4.68358 4.77585 4.81164 4.84192 4.86309 4.93410 4.97353 5.00610 5.01955 5.04287 5.06287 5.10102 5.15595 5.18966 5.23694 5.37344 5.49465 5.60150 5.62189 5.81685 5.89797 6.14828 6.16126 6.20235 6.29609 6.81491 7.43109 8.91795 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.025975 B = 0.003208 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.693073 B = 8725.871704 C = 8998.408785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.273 3.727 3 H 0.025 0.975 4 C -0.543 4.543 5 H 0.052 0.948 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.953 3.047 9 H -0.282 1.282 10 H -0.276 1.276 11 H -0.268 1.268 12 N -0.999 5.999 13 C 0.103 3.897 14 S 2.787 3.213 15 O -1.005 7.005 16 O -1.016 7.016 17 N -1.003 6.003 18 C 0.079 3.921 19 C 0.128 3.872 20 C -0.107 4.107 21 H 0.054 0.946 22 C -0.112 4.112 23 C -0.117 4.117 24 C 0.056 3.944 25 N -0.568 5.568 26 C 0.026 3.974 27 C 0.059 3.941 28 H 0.063 0.937 29 H 0.039 0.961 30 H 0.041 0.959 31 H 0.265 0.735 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.053 0.947 44 H 0.041 0.959 45 H 0.079 0.921 46 H 0.034 0.966 47 H 0.064 0.936 48 H 0.074 0.926 49 H 0.070 0.930 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.987 0.345 -22.854 23.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.169 3.831 3 H 0.042 0.958 4 C -0.583 4.583 5 H 0.070 0.930 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.778 3.222 9 H -0.208 1.208 10 H -0.201 1.201 11 H -0.192 1.192 12 N -0.840 5.840 13 C -0.043 4.043 14 S 2.798 3.202 15 O -0.988 6.988 16 O -1.001 7.001 17 N -0.844 5.844 18 C -0.065 4.065 19 C 0.002 3.998 20 C -0.128 4.128 21 H 0.072 0.928 22 C -0.150 4.150 23 C -0.155 4.155 24 C -0.071 4.071 25 N -0.293 5.293 26 C -0.122 4.122 27 C -0.069 4.069 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.072 0.928 44 H 0.059 0.941 45 H 0.097 0.903 46 H 0.053 0.947 47 H 0.083 0.917 48 H 0.093 0.907 49 H 0.089 0.911 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.673 0.379 -22.476 22.542 hybrid contribution -0.493 0.034 1.060 1.169 sum -2.165 0.412 -21.417 21.530 Atomic orbital electron populations 1.21858 0.96489 1.00597 0.99948 1.18389 0.92486 0.91239 0.80978 0.95753 1.21685 1.31809 1.12998 0.91794 0.93003 1.25615 0.95177 0.95726 1.01556 1.69972 1.37155 1.23604 1.24365 0.85645 0.78051 0.79196 0.79299 1.20848 1.20112 1.19207 1.57686 1.66111 1.23825 1.36425 1.21367 1.01222 0.81336 1.00338 1.01547 0.73944 0.72366 0.72365 1.93509 1.68152 1.59655 1.77512 1.93515 1.77064 1.56801 1.72674 1.57718 1.71868 1.20846 1.33952 1.21798 1.00496 0.79940 1.04309 1.21546 0.99241 0.95037 0.83949 1.21675 0.99465 0.95737 0.95900 0.92789 1.21565 1.00043 0.99111 0.94267 1.21585 0.99560 0.95621 0.98693 1.22139 0.99779 0.93119 0.92092 1.61869 1.50194 1.07556 1.09703 1.22367 1.01022 0.87606 1.01215 1.22277 0.94004 0.96640 0.93939 0.91775 0.94175 0.93988 0.92590 0.94325 0.90198 0.90188 0.91929 0.92082 0.87766 0.87350 0.90018 0.91198 0.90118 0.89398 0.92790 0.94061 0.90251 0.94745 0.91744 0.90721 0.91125 0.93265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.76 8.62 71.98 0.62 -5.14 16 2 C 0.27 13.62 2.61 44.24 0.12 13.73 16 3 H 0.02 1.39 6.87 -2.39 -0.02 1.37 16 4 C -0.54 -30.15 8.44 25.60 0.22 -29.93 16 5 H 0.05 2.89 7.78 -2.91 -0.02 2.87 16 6 C 0.02 1.07 5.30 84.66 0.45 1.52 16 7 N -0.91 -51.56 11.38 21.45 0.24 -51.32 16 8 Si 0.95 43.94 29.54 68.60 2.03 45.97 16 9 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 10 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 N -1.00 -41.80 3.12 -520.46 -1.62 -43.42 16 13 C 0.10 3.54 9.74 127.77 1.24 4.79 16 14 S 2.79 112.82 5.98 -56.49 -0.34 112.48 16 15 O -1.00 -42.43 16.24 -128.00 -2.08 -44.51 16 16 O -1.02 -50.02 15.15 -128.00 -1.94 -51.96 16 17 N -1.00 -29.15 3.13 -539.11 -1.69 -30.84 16 18 C 0.08 2.02 9.75 127.77 1.25 3.27 16 19 C 0.13 2.80 4.83 86.38 0.42 3.22 16 20 C -0.11 -2.38 2.55 -10.74 -0.03 -2.41 16 21 H 0.05 1.61 7.83 -2.39 -0.02 1.59 16 22 C -0.11 -1.87 5.29 30.66 0.16 -1.71 16 23 C -0.12 -1.86 6.09 30.64 0.19 -1.68 16 24 C 0.06 0.88 5.46 86.33 0.47 1.35 16 25 N -0.57 -11.34 4.91 -922.58 -4.53 -15.87 16 26 C 0.03 0.41 9.62 127.69 1.23 1.64 16 27 C 0.06 1.19 3.67 86.33 0.32 1.50 16 28 H 0.06 3.20 6.25 -2.39 -0.01 3.18 16 29 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.04 1.77 6.81 -2.39 -0.02 1.75 16 31 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 32 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.08 2.60 6.33 -2.39 -0.02 2.58 16 34 H 0.08 2.16 6.80 -2.39 -0.02 2.14 16 35 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.06 1.83 7.00 -2.39 -0.02 1.81 16 37 H 0.10 1.92 5.59 -2.39 -0.01 1.90 16 38 H 0.11 1.70 8.10 -2.38 -0.02 1.68 16 39 H 0.08 1.77 6.69 -2.38 -0.02 1.76 16 40 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.05 1.06 8.14 -2.38 -0.02 1.05 16 44 H 0.04 0.57 8.14 -2.38 -0.02 0.55 16 45 H 0.08 1.11 8.12 -2.38 -0.02 1.09 16 46 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 47 H 0.06 1.06 8.02 -2.39 -0.02 1.04 16 48 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 49 H 0.07 1.58 5.59 -2.39 -0.01 1.56 16 50 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 Total: -1.00 -70.91 388.40 -2.38 -73.29 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.90 Total: 16.01 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: 6.65 Total: -9.84 kcal Atomic # 7 Polarization: -133.84 SS G_CDS: -7.60 Total: -141.44 kcal Atomic # 8 Polarization: -92.45 SS G_CDS: -4.02 Total: -96.47 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: 112.82 SS G_CDS: -0.34 Total: 112.48 kcal Total: -70.91 -2.38 -73.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407976990.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.581 kcal (2) G-P(sol) polarization free energy of solvation -70.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds