Wall clock time and date at job start Tue Mar 31 2020 17:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.46841 * 2 1 4 4 C 1.53001 * 109.47170 * 119.99523 * 2 1 3 5 5 N 1.46898 * 109.46936 * 175.00135 * 4 2 1 6 6 C 1.46907 * 110.99904 * 170.00331 * 5 4 2 7 7 C 1.53240 * 109.34116 * 187.25789 * 6 5 4 8 8 N 1.47085 * 108.51895 * 306.16607 * 7 6 5 9 9 S 1.65594 * 120.88271 * 231.18888 * 8 7 6 10 10 O 1.42100 * 106.40217 * 336.45860 * 9 8 7 11 11 O 1.42106 * 106.40121 * 203.54143 * 9 8 7 12 12 N 1.65594 * 107.22053 * 90.00334 * 9 8 7 13 13 C 1.46502 * 119.99875 * 270.00328 * 12 9 8 14 14 C 1.46492 * 120.00299 * 89.99772 * 12 9 8 15 15 H 1.09001 * 109.47164 * 0.02562 * 14 12 9 16 16 C 1.53006 * 109.47363 * 240.00373 * 14 12 9 17 17 C 1.50698 * 109.47354 * 120.00008 * 14 12 9 18 18 H 1.08003 * 120.00057 * 0.02562 * 17 14 12 19 19 C 1.37876 * 120.00356 * 179.97438 * 17 14 12 20 20 N 1.31519 * 119.99989 * 0.02562 * 19 17 14 21 21 Si 1.86798 * 120.00260 * 180.02562 * 19 17 14 22 22 H 1.48500 * 109.46790 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47548 * 120.00188 * 21 19 17 24 24 H 1.48504 * 109.47233 * 240.00380 * 21 19 17 25 25 C 1.47085 * 118.23476 * 51.46188 * 8 7 6 26 26 C 1.46902 * 111.00358 * 294.30442 * 5 4 2 27 27 H 1.08999 * 109.47269 * 299.99744 * 1 2 3 28 28 H 1.08992 * 109.47070 * 60.00558 * 1 2 3 29 29 H 1.09003 * 109.46934 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47414 * 239.99805 * 2 1 3 31 31 H 1.08999 * 109.46980 * 60.00079 * 3 2 1 32 32 H 1.08999 * 109.47052 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.46529 * 300.00022 * 3 2 1 34 34 H 1.08999 * 109.47199 * 55.00695 * 4 2 1 35 35 H 1.09003 * 109.47519 * 295.00442 * 4 2 1 36 36 H 1.08996 * 109.49390 * 67.29355 * 6 5 4 37 37 H 1.09002 * 109.48932 * 307.21565 * 6 5 4 38 38 H 1.08992 * 109.62817 * 186.45871 * 7 6 5 39 39 H 1.08996 * 109.63161 * 65.87691 * 7 6 5 40 40 H 1.09001 * 109.47121 * 269.99898 * 13 12 9 41 41 H 1.08998 * 109.47156 * 29.99112 * 13 12 9 42 42 H 1.09000 * 109.47663 * 149.99637 * 13 12 9 43 43 H 1.09001 * 109.46998 * 299.99569 * 16 14 12 44 44 H 1.09000 * 109.47050 * 59.99860 * 16 14 12 45 45 H 1.09001 * 109.46801 * 179.97438 * 16 14 12 46 46 H 0.96996 * 119.99885 * 179.97438 * 20 19 17 47 47 H 1.09001 * 109.63230 * 68.25069 * 25 8 7 48 48 H 1.08995 * 109.62891 * 188.83071 * 25 8 7 49 49 H 1.09000 * 109.49090 * 292.70677 * 26 5 4 50 50 H 1.08994 * 109.48995 * 52.78803 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5040 -0.8265 1.1904 6 6 4.0499 -1.2964 2.4708 7 6 5.5798 -1.2199 2.4289 8 7 6.0520 -1.9537 1.2448 9 16 7.2297 -3.1104 1.3754 10 8 7.9610 -2.8071 2.5555 11 8 7.8327 -3.2157 0.0929 12 7 6.4695 -4.5548 1.6547 13 6 6.1982 -4.9862 3.0282 14 6 6.0680 -5.4011 0.5283 15 1 6.3511 -4.9189 -0.4074 16 6 4.5520 -5.6057 0.5589 17 6 6.7574 -6.7370 0.6330 18 1 7.4273 -6.9360 1.4565 19 6 6.5323 -7.7058 -0.3219 20 7 5.7161 -7.4638 -1.3244 21 14 7.3862 -9.3620 -0.1917 22 1 8.2457 -9.3819 1.0192 23 1 6.3675 -10.4379 -0.0928 24 1 8.2241 -9.5831 -1.3977 25 6 5.4546 -1.6285 -0.0593 26 6 3.9254 -1.6929 0.0815 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6055 -1.7197 1.2952 35 1 1.7516 -0.1582 2.1370 36 1 3.7418 -2.3279 2.6410 37 1 3.6763 -0.6668 3.2784 38 1 5.9939 -1.6731 3.3296 39 1 5.8927 -0.1780 2.3628 40 1 7.0424 -5.5670 3.4000 41 1 6.0520 -4.1114 3.6617 42 1 5.2985 -5.6014 3.0449 43 1 4.2693 -6.0881 1.4946 44 1 4.0534 -4.6393 0.4831 45 1 4.2534 -6.2350 -0.2795 46 1 5.5580 -8.1452 -1.9964 47 1 5.7557 -0.6249 -0.3600 48 1 5.7858 -2.3518 -0.8044 49 1 3.6190 -2.7190 0.2849 50 1 3.4615 -1.3510 -0.8437 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407977193.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:13 Heat of formation + Delta-G solvation = -70.681743 kcal Electronic energy + Delta-G solvation = -29551.034619 eV Core-core repulsion = 25740.104418 eV Total energy + Delta-G solvation = -3810.930200 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.17733 -36.73689 -36.27392 -36.14287 -35.21404 -33.30862 -32.59043 -31.07821 -29.10415 -27.46185 -27.22835 -25.61642 -25.16139 -24.05139 -23.77642 -21.05995 -20.34572 -19.81419 -18.38887 -17.44191 -16.90672 -16.32282 -15.80830 -15.62211 -15.17868 -15.03610 -14.85879 -14.45554 -14.21975 -13.98104 -13.52183 -13.46927 -13.24886 -12.88807 -12.74133 -12.56080 -12.33571 -12.05568 -11.91298 -11.86743 -11.78062 -11.57957 -11.46367 -11.28366 -11.23365 -11.18235 -11.08666 -10.99520 -10.90199 -10.83671 -10.71758 -10.52702 -10.34116 -10.28406 -10.02078 -9.27811 -8.95642 -8.47257 -8.26432 -7.95883 -6.09169 -4.15335 1.16375 3.26529 3.34862 3.38628 3.43234 3.79753 4.09175 4.39112 4.61606 4.78936 4.80640 4.82404 5.03214 5.11300 5.21396 5.24782 5.29326 5.40848 5.41562 5.42378 5.52674 5.55780 5.60205 5.63341 5.67724 5.75901 5.81253 5.86740 5.93202 5.98254 6.11020 6.13942 6.15978 6.22047 6.29400 6.36743 6.58836 6.68910 6.75601 6.84024 6.99072 7.02209 7.03661 7.44952 7.61834 7.76807 8.01833 8.25973 8.87254 9.50658 10.96501 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014650 B = 0.004011 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.842798 B = 6979.129384 C = 8041.785052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.136 4.136 4 C 0.060 3.940 5 N -0.533 5.533 6 C 0.043 3.957 7 C 0.131 3.869 8 N -1.012 6.012 9 S 2.777 3.223 10 O -0.995 6.995 11 O -0.972 6.972 12 N -0.991 5.991 13 C 0.112 3.888 14 C 0.269 3.731 15 H 0.057 0.943 16 C -0.146 4.146 17 C -0.519 4.519 18 H 0.062 0.938 19 C 0.064 3.936 20 N -0.891 5.891 21 Si 0.897 3.103 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.131 3.869 26 C 0.036 3.964 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.033 0.967 35 H 0.072 0.928 36 H 0.041 0.959 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.048 0.952 41 H 0.046 0.954 42 H 0.070 0.930 43 H 0.032 0.968 44 H 0.009 0.991 45 H 0.092 0.908 46 H 0.262 0.738 47 H 0.072 0.928 48 H 0.094 0.906 49 H 0.048 0.952 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.897 14.713 5.185 18.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 C -0.194 4.194 4 C -0.068 4.068 5 N -0.257 5.257 6 C -0.087 4.087 7 C 0.005 3.995 8 N -0.851 5.851 9 S 2.787 3.213 10 O -0.978 6.978 11 O -0.956 6.956 12 N -0.833 5.833 13 C -0.035 4.035 14 C 0.166 3.834 15 H 0.075 0.925 16 C -0.205 4.205 17 C -0.558 4.558 18 H 0.081 0.919 19 C -0.139 4.139 20 N -0.529 5.529 21 Si 0.725 3.275 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.209 1.209 25 C 0.005 3.995 26 C -0.093 4.093 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.089 0.911 43 H 0.051 0.949 44 H 0.028 0.972 45 H 0.111 0.889 46 H 0.072 0.928 47 H 0.090 0.910 48 H 0.112 0.888 49 H 0.067 0.933 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.809 15.238 4.871 18.263 hybrid contribution -0.453 -1.894 0.232 1.962 sum -9.262 13.344 5.102 17.026 Atomic orbital electron populations 1.21817 0.95311 1.01642 1.01686 1.21164 0.94987 0.97192 0.98134 1.21707 1.02259 0.94848 1.00558 1.22167 0.87210 0.98871 0.98508 1.61880 1.09375 1.50737 1.03757 1.22453 0.95436 0.99135 0.91665 1.21376 0.93171 0.97590 0.87385 1.58512 1.58985 1.54366 1.13252 1.02085 0.73690 0.72439 0.73068 1.93525 1.69457 1.84804 1.50062 1.93592 1.73977 1.86231 1.41757 1.57780 1.77302 1.35067 1.13163 1.21110 1.01805 0.99059 0.81477 1.18703 0.91934 0.89953 0.82793 0.92488 1.22134 0.97686 0.98346 1.02359 1.21377 1.26660 0.97769 1.10027 0.91947 1.24901 0.95163 0.98765 0.95029 1.69861 1.35970 1.34435 1.12663 0.86451 0.79405 0.83434 0.78189 1.19738 1.21019 1.20863 1.21505 0.91832 1.02067 0.84096 1.22682 0.96002 0.95758 0.94833 0.92825 0.92587 0.92823 0.90932 0.93349 0.91392 0.93627 0.94854 0.90972 0.94084 0.90123 0.89464 0.90890 0.93310 0.93574 0.91147 0.94928 0.97199 0.88927 0.92779 0.90959 0.88796 0.93341 0.89695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.19 37.16 0.34 -0.79 16 2 C -0.10 -0.85 2.84 -90.61 -0.26 -1.10 16 3 C -0.14 -1.16 9.08 37.16 0.34 -0.83 16 4 C 0.06 0.58 4.35 -3.82 -0.02 0.57 16 5 N -0.53 -5.92 4.08 -234.02 -0.96 -6.88 16 6 C 0.04 0.47 5.62 -3.70 -0.02 0.45 16 7 C 0.13 1.65 6.53 -3.60 -0.02 1.63 16 8 N -1.01 -15.71 3.38 -112.97 -0.38 -16.09 16 9 S 2.78 55.24 6.06 -107.50 -0.65 54.58 16 10 O -0.99 -20.78 15.99 -57.17 -0.91 -21.70 16 11 O -0.97 -22.73 15.47 -57.17 -0.88 -23.62 16 12 N -0.99 -20.48 3.12 -115.85 -0.36 -20.84 16 13 C 0.11 1.99 9.53 59.85 0.57 2.56 16 14 C 0.27 6.48 2.62 -69.08 -0.18 6.29 16 15 H 0.06 1.52 6.91 -51.93 -0.36 1.16 16 16 C -0.15 -3.22 8.95 37.16 0.33 -2.89 16 17 C -0.52 -13.91 8.37 -34.44 -0.29 -14.20 16 18 H 0.06 1.68 7.65 -52.48 -0.40 1.28 16 19 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 20 N -0.89 -24.48 11.32 55.43 0.63 -23.85 16 21 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.13 1.87 6.56 -3.36 -0.02 1.85 16 26 C 0.04 0.46 5.48 -3.46 -0.02 0.44 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.70 6.19 -51.93 -0.32 0.37 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.66 7.75 -51.93 -0.40 0.26 16 33 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 35 H 0.07 0.64 7.97 -51.93 -0.41 0.23 16 36 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.73 7.99 -51.93 -0.41 0.31 16 38 H 0.09 1.09 7.22 -51.93 -0.37 0.71 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.68 7.79 -51.93 -0.40 0.28 16 42 H 0.07 1.21 6.43 -51.93 -0.33 0.88 16 43 H 0.03 0.69 6.66 -51.93 -0.35 0.34 16 44 H 0.01 0.18 6.55 -51.93 -0.34 -0.16 16 45 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 46 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 47 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.09 1.50 7.21 -51.93 -0.37 1.12 16 49 H 0.05 0.70 6.55 -51.93 -0.34 0.36 16 50 H 0.08 0.95 6.07 -51.93 -0.32 0.64 16 LS Contribution 389.45 15.07 5.87 5.87 Total: -1.00 -30.89 389.45 -10.83 -41.72 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -8.82 Total: -0.88 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 0.66 Total: -4.39 kcal Atomic # 7 Polarization: -66.59 SS G_CDS: -1.07 Total: -67.66 kcal Atomic # 8 Polarization: -43.52 SS G_CDS: -1.80 Total: -45.31 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 55.24 SS G_CDS: -0.65 Total: 54.58 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.89 -10.83 -41.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407977193.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.958 kcal (2) G-P(sol) polarization free energy of solvation -30.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds