Wall clock time and date at job start Tue Mar 31 2020 17:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.46841 * 2 1 4 4 C 1.53001 * 109.47170 * 119.99523 * 2 1 3 5 5 N 1.46898 * 109.46936 * 175.00135 * 4 2 1 6 6 C 1.46907 * 110.99904 * 170.00331 * 5 4 2 7 7 C 1.53240 * 109.34116 * 187.25789 * 6 5 4 8 8 N 1.47085 * 108.51895 * 306.16607 * 7 6 5 9 9 S 1.65594 * 120.88271 * 231.18888 * 8 7 6 10 10 O 1.42100 * 106.40217 * 336.45860 * 9 8 7 11 11 O 1.42106 * 106.40121 * 203.54143 * 9 8 7 12 12 N 1.65594 * 107.22053 * 90.00334 * 9 8 7 13 13 C 1.46502 * 119.99875 * 270.00328 * 12 9 8 14 14 C 1.46492 * 120.00299 * 89.99772 * 12 9 8 15 15 H 1.09001 * 109.47164 * 0.02562 * 14 12 9 16 16 C 1.53006 * 109.47363 * 240.00373 * 14 12 9 17 17 C 1.50698 * 109.47354 * 120.00008 * 14 12 9 18 18 H 1.08003 * 120.00057 * 0.02562 * 17 14 12 19 19 C 1.37876 * 120.00356 * 179.97438 * 17 14 12 20 20 N 1.31519 * 119.99989 * 0.02562 * 19 17 14 21 21 Si 1.86798 * 120.00260 * 180.02562 * 19 17 14 22 22 H 1.48500 * 109.46790 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47548 * 120.00188 * 21 19 17 24 24 H 1.48504 * 109.47233 * 240.00380 * 21 19 17 25 25 C 1.47085 * 118.23476 * 51.46188 * 8 7 6 26 26 C 1.46902 * 111.00358 * 294.30442 * 5 4 2 27 27 H 1.08999 * 109.47269 * 299.99744 * 1 2 3 28 28 H 1.08992 * 109.47070 * 60.00558 * 1 2 3 29 29 H 1.09003 * 109.46934 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47414 * 239.99805 * 2 1 3 31 31 H 1.08999 * 109.46980 * 60.00079 * 3 2 1 32 32 H 1.08999 * 109.47052 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.46529 * 300.00022 * 3 2 1 34 34 H 1.08999 * 109.47199 * 55.00695 * 4 2 1 35 35 H 1.09003 * 109.47519 * 295.00442 * 4 2 1 36 36 H 1.08996 * 109.49390 * 67.29355 * 6 5 4 37 37 H 1.09002 * 109.48932 * 307.21565 * 6 5 4 38 38 H 1.08992 * 109.62817 * 186.45871 * 7 6 5 39 39 H 1.08996 * 109.63161 * 65.87691 * 7 6 5 40 40 H 1.09001 * 109.47121 * 269.99898 * 13 12 9 41 41 H 1.08998 * 109.47156 * 29.99112 * 13 12 9 42 42 H 1.09000 * 109.47663 * 149.99637 * 13 12 9 43 43 H 1.09001 * 109.46998 * 299.99569 * 16 14 12 44 44 H 1.09000 * 109.47050 * 59.99860 * 16 14 12 45 45 H 1.09001 * 109.46801 * 179.97438 * 16 14 12 46 46 H 0.96996 * 119.99885 * 179.97438 * 20 19 17 47 47 H 1.09001 * 109.63230 * 68.25069 * 25 8 7 48 48 H 1.08995 * 109.62891 * 188.83071 * 25 8 7 49 49 H 1.09000 * 109.49090 * 292.70677 * 26 5 4 50 50 H 1.08994 * 109.48995 * 52.78803 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5040 -0.8265 1.1904 6 6 4.0499 -1.2964 2.4708 7 6 5.5798 -1.2199 2.4289 8 7 6.0520 -1.9537 1.2448 9 16 7.2297 -3.1104 1.3754 10 8 7.9610 -2.8071 2.5555 11 8 7.8327 -3.2157 0.0929 12 7 6.4695 -4.5548 1.6547 13 6 6.1982 -4.9862 3.0282 14 6 6.0680 -5.4011 0.5283 15 1 6.3511 -4.9189 -0.4074 16 6 4.5520 -5.6057 0.5589 17 6 6.7574 -6.7370 0.6330 18 1 7.4273 -6.9360 1.4565 19 6 6.5323 -7.7058 -0.3219 20 7 5.7161 -7.4638 -1.3244 21 14 7.3862 -9.3620 -0.1917 22 1 8.2457 -9.3819 1.0192 23 1 6.3675 -10.4379 -0.0928 24 1 8.2241 -9.5831 -1.3977 25 6 5.4546 -1.6285 -0.0593 26 6 3.9254 -1.6929 0.0815 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6055 -1.7197 1.2952 35 1 1.7516 -0.1582 2.1370 36 1 3.7418 -2.3279 2.6410 37 1 3.6763 -0.6668 3.2784 38 1 5.9939 -1.6731 3.3296 39 1 5.8927 -0.1780 2.3628 40 1 7.0424 -5.5670 3.4000 41 1 6.0520 -4.1114 3.6617 42 1 5.2985 -5.6014 3.0449 43 1 4.2693 -6.0881 1.4946 44 1 4.0534 -4.6393 0.4831 45 1 4.2534 -6.2350 -0.2795 46 1 5.5580 -8.1452 -1.9964 47 1 5.7557 -0.6249 -0.3600 48 1 5.7858 -2.3518 -0.8044 49 1 3.6190 -2.7190 0.2849 50 1 3.4615 -1.3510 -0.8437 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407977193.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:13 Heat of formation + Delta-G solvation = -91.662263 kcal Electronic energy + Delta-G solvation = -29551.944402 eV Core-core repulsion = 25740.104418 eV Total energy + Delta-G solvation = -3811.839984 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.13464 -38.41962 -37.90714 -37.15377 -36.90203 -34.54370 -34.24771 -32.12132 -30.91922 -28.41528 -27.85877 -27.32668 -27.02088 -24.97008 -24.80568 -22.68376 -21.55861 -20.63719 -19.79132 -18.93855 -18.63095 -18.13874 -17.26853 -16.67732 -16.56624 -16.09145 -15.89295 -15.73055 -15.43296 -15.18720 -14.93315 -14.87244 -14.62481 -14.19828 -13.87659 -13.69011 -13.59720 -13.40850 -13.21334 -13.18042 -13.05142 -13.02518 -12.89090 -12.82889 -12.68373 -12.61593 -12.34324 -12.29697 -12.22155 -12.17245 -11.98854 -11.83744 -11.69707 -11.56338 -11.22186 -11.15515 -10.52780 -10.13354 -9.66834 -9.20061 -8.13530 -6.26912 -0.39367 1.39336 1.42538 1.52814 1.98143 2.40822 2.54486 2.92539 3.14651 3.31939 3.66856 3.87068 4.03789 4.07897 4.14655 4.29629 4.31872 4.32514 4.36432 4.47802 4.63294 4.64302 4.73859 4.75767 4.77507 4.84154 4.87664 4.89534 4.91642 4.97406 5.03252 5.08583 5.10869 5.13463 5.14154 5.19335 5.22551 5.35607 5.51252 5.52664 5.60038 5.61281 5.78231 5.86350 6.08938 6.12201 6.17962 6.28532 6.80454 7.42120 8.90567 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014650 B = 0.004011 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.842798 B = 6979.129384 C = 8041.785052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 C -0.131 4.131 4 C 0.062 3.938 5 N -0.530 5.530 6 C 0.045 3.955 7 C 0.124 3.876 8 N -1.005 6.005 9 S 2.789 3.211 10 O -1.006 7.006 11 O -1.014 7.014 12 N -0.998 5.998 13 C 0.107 3.893 14 C 0.276 3.724 15 H 0.024 0.976 16 C -0.129 4.129 17 C -0.539 4.539 18 H 0.054 0.946 19 C 0.020 3.980 20 N -0.912 5.912 21 Si 0.954 3.046 22 H -0.272 1.272 23 H -0.274 1.274 24 H -0.283 1.283 25 C 0.128 3.872 26 C 0.045 3.955 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.025 0.975 35 H 0.087 0.913 36 H 0.031 0.969 37 H 0.110 0.890 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.040 0.960 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.039 0.961 44 H 0.032 0.968 45 H 0.066 0.934 46 H 0.265 0.735 47 H 0.090 0.910 48 H 0.070 0.930 49 H 0.028 0.972 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.264 15.915 6.521 20.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 C -0.188 4.188 4 C -0.065 4.065 5 N -0.255 5.255 6 C -0.084 4.084 7 C -0.001 4.001 8 N -0.846 5.846 9 S 2.800 3.200 10 O -0.990 6.990 11 O -0.998 6.998 12 N -0.839 5.839 13 C -0.039 4.039 14 C 0.172 3.828 15 H 0.041 0.959 16 C -0.188 4.188 17 C -0.579 4.579 18 H 0.072 0.928 19 C -0.180 4.180 20 N -0.551 5.551 21 Si 0.779 3.221 22 H -0.196 1.196 23 H -0.199 1.199 24 H -0.209 1.209 25 C 0.002 3.998 26 C -0.084 4.084 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.043 0.957 35 H 0.105 0.895 36 H 0.050 0.950 37 H 0.128 0.872 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.058 0.942 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.058 0.942 44 H 0.051 0.949 45 H 0.085 0.915 46 H 0.074 0.926 47 H 0.108 0.892 48 H 0.088 0.912 49 H 0.046 0.954 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.179 16.440 6.232 20.316 hybrid contribution -0.040 -2.160 -0.165 2.166 sum -10.219 14.280 6.067 18.579 Atomic orbital electron populations 1.21784 0.94355 1.01623 1.02364 1.21154 0.95766 0.97201 0.97286 1.21648 1.01421 0.94626 1.01140 1.22218 0.85965 0.98770 0.99572 1.61911 1.10452 1.49797 1.03310 1.22486 0.94149 0.99348 0.92435 1.21688 0.94411 0.97949 0.86057 1.58168 1.58329 1.53272 1.14865 1.01488 0.73984 0.72674 0.71893 1.93498 1.70314 1.84977 1.50180 1.93531 1.75593 1.86911 1.43757 1.57680 1.77375 1.35416 1.13469 1.21295 1.01671 1.00581 0.80359 1.18357 0.92823 0.88932 0.82692 0.95863 1.21885 0.96384 0.99086 1.01490 1.21675 1.26980 0.99284 1.09946 0.92821 1.25603 0.95791 1.01817 0.94811 1.69970 1.36684 1.35363 1.13066 0.85578 0.78588 0.79972 0.77920 1.19609 1.19909 1.20914 1.21617 0.93047 1.02180 0.82953 1.22553 0.94569 0.95048 0.96273 0.91973 0.92113 0.93199 0.91958 0.92685 0.92543 0.93165 0.95662 0.89463 0.95027 0.87195 0.89094 0.89270 0.94170 0.90368 0.90579 0.94200 0.94922 0.91529 0.92618 0.89175 0.91155 0.95357 0.88355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.19 71.98 0.66 -1.23 16 2 C -0.10 -1.48 2.84 -10.79 -0.03 -1.51 16 3 C -0.13 -1.92 9.08 71.99 0.65 -1.27 16 4 C 0.06 1.05 4.35 86.30 0.38 1.42 16 5 N -0.53 -10.55 4.08 -894.30 -3.65 -14.20 16 6 C 0.05 0.87 5.62 86.38 0.49 1.36 16 7 C 0.12 2.83 6.53 86.35 0.56 3.40 16 8 N -1.00 -30.33 3.38 -511.32 -1.73 -32.06 16 9 S 2.79 111.60 6.06 -56.49 -0.34 111.26 16 10 O -1.01 -41.47 15.99 -128.00 -2.05 -43.52 16 11 O -1.01 -49.09 15.47 -128.00 -1.98 -51.07 16 12 N -1.00 -41.47 3.12 -520.45 -1.62 -43.10 16 13 C 0.11 3.70 9.53 127.77 1.22 4.92 16 14 C 0.28 13.59 2.62 44.25 0.12 13.71 16 15 H 0.02 1.31 6.91 -2.39 -0.02 1.29 16 16 C -0.13 -5.74 8.95 71.98 0.64 -5.09 16 17 C -0.54 -29.46 8.37 25.60 0.21 -29.24 16 18 H 0.05 2.95 7.65 -2.91 -0.02 2.93 16 19 C 0.02 1.08 5.30 84.65 0.45 1.53 16 20 N -0.91 -50.96 11.32 21.45 0.24 -50.71 16 21 Si 0.95 43.50 29.54 68.60 2.03 45.52 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 24 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 25 C 0.13 3.60 6.56 86.50 0.57 4.16 16 26 C 0.05 1.08 5.48 86.54 0.47 1.56 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 1.10 6.19 -2.39 -0.01 1.08 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.97 7.75 -2.39 -0.02 0.95 16 33 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.03 0.48 8.12 -2.39 -0.02 0.46 16 35 H 0.09 1.24 7.97 -2.39 -0.02 1.22 16 36 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.11 1.53 7.99 -2.39 -0.02 1.52 16 38 H 0.09 2.03 7.22 -2.39 -0.02 2.02 16 39 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.08 2.18 7.79 -2.39 -0.02 2.16 16 42 H 0.08 2.53 6.43 -2.39 -0.02 2.52 16 43 H 0.04 1.67 6.66 -2.39 -0.02 1.65 16 44 H 0.03 1.26 6.55 -2.39 -0.02 1.24 16 45 H 0.07 3.33 6.07 -2.39 -0.01 3.32 16 46 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 47 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 48 H 0.07 2.33 7.21 -2.39 -0.02 2.31 16 49 H 0.03 0.80 6.55 -2.39 -0.02 0.78 16 50 H 0.10 2.10 6.07 -2.39 -0.01 2.09 16 Total: -1.00 -66.95 389.45 -1.81 -68.76 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.90 Total: 15.40 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 6.39 Total: -6.29 kcal Atomic # 7 Polarization: -133.31 SS G_CDS: -6.76 Total: -140.08 kcal Atomic # 8 Polarization: -90.56 SS G_CDS: -4.03 Total: -94.59 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 111.60 SS G_CDS: -0.34 Total: 111.26 kcal Total: -66.95 -1.81 -68.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407977193.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.899 kcal (2) G-P(sol) polarization free energy of solvation -66.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds