Wall clock time and date at job start Tue Mar 31 2020 17:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.47414 * 2 1 4 4 C 1.46845 * 111.00259 * 170.00265 * 3 2 1 5 5 C 1.53037 * 109.52403 * 185.84019 * 4 3 2 6 6 C 1.53115 * 109.28002 * 300.82328 * 5 4 3 7 7 N 1.46502 * 109.52613 * 177.55767 * 6 5 4 8 8 C 1.46496 * 119.99974 * 300.12788 * 7 6 5 9 9 S 1.65596 * 119.99971 * 120.11953 * 7 6 5 10 10 O 1.42103 * 106.40573 * 336.46876 * 9 7 6 11 11 O 1.42095 * 106.40333 * 203.54405 * 9 7 6 12 12 N 1.65601 * 107.21468 * 90.00361 * 9 7 6 13 13 C 1.46496 * 120.00282 * 270.00027 * 12 9 7 14 14 C 1.46506 * 119.99962 * 90.00041 * 12 9 7 15 15 H 1.09000 * 109.46935 * 359.97438 * 14 12 9 16 16 C 1.52999 * 109.47300 * 239.99939 * 14 12 9 17 17 C 1.50699 * 109.47257 * 119.99824 * 14 12 9 18 18 H 1.08007 * 119.99988 * 5.62300 * 17 14 12 19 19 C 1.37875 * 119.99986 * 185.61754 * 17 14 12 20 20 N 1.31520 * 119.99906 * 196.95681 * 19 17 14 21 21 Si 1.86801 * 120.00016 * 17.23798 * 19 17 14 22 22 H 1.48498 * 109.46871 * 179.72225 * 21 19 17 23 23 H 1.48500 * 109.46852 * 299.72216 * 21 19 17 24 24 H 1.48501 * 109.47068 * 59.72265 * 21 19 17 25 25 C 1.53124 * 109.21651 * 57.61858 * 6 5 4 26 26 C 1.46848 * 110.99977 * 294.21517 * 3 2 1 27 27 H 1.09006 * 109.46666 * 299.99793 * 1 2 3 28 28 H 1.09000 * 109.47323 * 59.99490 * 1 2 3 29 29 H 1.09006 * 109.47141 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46666 * 240.00207 * 2 1 3 31 31 H 1.09000 * 109.47323 * 120.00510 * 2 1 3 32 32 H 1.08999 * 109.45866 * 65.82301 * 4 3 2 33 33 H 1.08998 * 109.45784 * 305.85484 * 4 3 2 34 34 H 1.08997 * 109.50396 * 180.87596 * 5 4 3 35 35 H 1.08999 * 109.49900 * 60.75959 * 5 4 3 36 36 H 1.08998 * 109.52071 * 297.68573 * 6 5 4 37 37 H 1.09004 * 109.47049 * 269.99691 * 8 7 6 38 38 H 1.09004 * 109.47400 * 29.99487 * 8 7 6 39 39 H 1.08997 * 109.47332 * 149.99438 * 8 7 6 40 40 H 1.09000 * 109.47496 * 270.00090 * 13 12 9 41 41 H 1.08997 * 109.47366 * 29.99851 * 13 12 9 42 42 H 1.09000 * 109.47560 * 150.00373 * 13 12 9 43 43 H 1.08998 * 109.47121 * 305.88946 * 16 14 12 44 44 H 1.08999 * 109.47185 * 65.88326 * 16 14 12 45 45 H 1.09000 * 109.47446 * 185.88606 * 16 14 12 46 46 H 0.96992 * 119.99961 * 355.08665 * 20 19 17 47 47 H 1.09000 * 109.49720 * 62.31870 * 25 6 5 48 48 H 1.08996 * 109.50230 * 182.43735 * 25 6 5 49 49 H 1.09004 * 109.46392 * 294.17487 * 26 3 2 50 50 H 1.09008 * 109.46444 * 54.15516 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4680 1.4310 0.2380 5 6 3.9175 2.8874 0.3761 6 6 3.5676 3.6483 -0.9057 7 7 3.9428 5.0566 -0.7570 8 6 3.3470 5.8647 0.3098 9 16 5.0405 5.7350 -1.7948 10 8 5.8200 4.6645 -2.3104 11 8 5.6027 6.8477 -1.1130 12 7 4.1891 6.3518 -3.0742 13 6 3.9227 5.5165 -4.2479 14 6 3.7021 7.7330 -3.0324 15 1 3.9939 8.1926 -2.0881 16 6 2.1769 7.7399 -3.1526 17 6 4.2997 8.5112 -4.1762 18 1 4.9015 8.0058 -4.9172 19 6 4.0780 9.8683 -4.2770 20 7 4.3002 10.4881 -5.4155 21 14 3.4697 10.8279 -2.7942 22 1 3.3183 12.2593 -3.1593 23 1 2.1573 10.2865 -2.3588 24 1 4.4501 10.7006 -1.6861 25 6 2.0609 3.5440 -1.1582 26 6 1.6650 2.0685 -1.2503 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.9887 0.9682 -0.6003 33 1 3.7028 0.8900 1.1546 34 1 4.9950 2.9219 0.5373 35 1 3.4075 3.3468 1.2228 36 1 4.1087 3.2139 -1.7463 37 1 2.4349 6.3354 -0.0572 38 1 3.1091 5.2255 1.1601 39 1 4.0535 6.6344 0.6204 40 1 4.7335 5.6315 -4.9672 41 1 3.8532 4.4725 -3.9426 42 1 2.9833 5.8241 -4.7072 43 1 1.8802 7.1883 -4.0447 44 1 1.7409 7.2681 -2.2721 45 1 1.8229 8.7681 -3.2267 46 1 4.6869 10.0058 -6.1628 47 1 1.5209 4.0141 -0.3363 48 1 1.8129 4.0474 -2.0926 49 1 2.1942 1.6027 -2.0817 50 1 0.5902 1.9907 -1.4146 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407977430.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:10 Heat of formation + Delta-G solvation = -67.623440 kcal Electronic energy + Delta-G solvation = -29498.440093 eV Core-core repulsion = 25687.642511 eV Total energy + Delta-G solvation = -3810.797582 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.58463 -36.86218 -36.48204 -36.33672 -35.33304 -32.83231 -32.55969 -31.12248 -29.83479 -29.45734 -26.47763 -25.79996 -24.62951 -24.02077 -23.23034 -21.57267 -20.57809 -19.73377 -18.51940 -17.60846 -17.40327 -16.81011 -16.63006 -15.70757 -15.43518 -14.84549 -14.72844 -14.34055 -14.10672 -13.94240 -13.71403 -13.53520 -13.32029 -13.25908 -13.01668 -12.71179 -12.41226 -12.18986 -12.13935 -12.07958 -11.97053 -11.73763 -11.66450 -11.59610 -11.53012 -11.36418 -11.33356 -11.26955 -11.07895 -10.84163 -10.72695 -10.48341 -10.39001 -9.98914 -9.75342 -9.15297 -8.90133 -8.58544 -8.40314 -8.05549 -6.47905 -4.11200 1.03505 3.29644 3.34251 3.47525 3.59438 3.61248 3.93609 4.45673 4.54391 4.57089 4.66013 4.81928 4.86167 4.93340 5.07214 5.11315 5.18060 5.20054 5.22249 5.32398 5.38048 5.46661 5.47373 5.51520 5.59019 5.62808 5.70171 5.73983 5.81301 5.89069 5.91802 5.98190 6.02881 6.08223 6.18631 6.31439 6.36397 6.39537 6.50120 6.55157 6.70027 6.83638 6.84228 6.96938 7.30900 7.49355 7.96579 8.35946 8.88440 9.57378 10.90498 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.020033 B = 0.003633 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.326999 B = 7705.508179 C = 7978.235098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 N -0.540 5.540 4 C 0.058 3.942 5 C -0.124 4.124 6 C 0.150 3.850 7 N -1.009 6.009 8 C 0.085 3.915 9 S 2.774 3.226 10 O -0.991 6.991 11 O -0.972 6.972 12 N -0.984 5.984 13 C 0.113 3.887 14 C 0.246 3.754 15 H 0.047 0.953 16 C -0.161 4.161 17 C -0.605 4.605 18 H 0.063 0.937 19 C 0.034 3.966 20 N -0.902 5.902 21 Si 1.034 2.966 22 H -0.283 1.283 23 H -0.272 1.272 24 H -0.275 1.275 25 C -0.126 4.126 26 C 0.054 3.946 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.032 0.968 31 H 0.073 0.927 32 H 0.036 0.964 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.049 0.951 41 H 0.048 0.952 42 H 0.072 0.928 43 H 0.050 0.950 44 H 0.025 0.975 45 H 0.064 0.936 46 H 0.268 0.732 47 H 0.078 0.922 48 H 0.074 0.926 49 H 0.035 0.965 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.099 -19.342 11.782 24.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.077 4.077 3 N -0.265 5.265 4 C -0.070 4.070 5 C -0.163 4.163 6 C 0.043 3.957 7 N -0.846 5.846 8 C -0.061 4.061 9 S 2.785 3.215 10 O -0.975 6.975 11 O -0.956 6.956 12 N -0.825 5.825 13 C -0.034 4.034 14 C 0.141 3.859 15 H 0.064 0.936 16 C -0.220 4.220 17 C -0.644 4.644 18 H 0.081 0.919 19 C -0.172 4.172 20 N -0.536 5.536 21 Si 0.862 3.138 22 H -0.208 1.208 23 H -0.198 1.198 24 H -0.201 1.201 25 C -0.165 4.165 26 C -0.074 4.074 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.090 0.910 43 H 0.069 0.931 44 H 0.044 0.956 45 H 0.083 0.917 46 H 0.078 0.922 47 H 0.097 0.903 48 H 0.093 0.907 49 H 0.053 0.947 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.846 -17.531 12.778 23.069 hybrid contribution 0.496 -1.975 -1.356 2.446 sum -7.350 -19.506 11.422 23.769 Atomic orbital electron populations 1.21812 0.94853 1.01441 1.02601 1.22051 0.96149 0.88844 1.00681 1.61985 1.13850 1.15385 1.35280 1.22055 0.87238 0.96875 1.00869 1.21929 1.01380 0.94401 0.98599 1.20880 0.95643 0.80502 0.98694 1.58163 1.62932 1.17959 1.45569 1.21506 0.99014 0.95253 0.90299 1.02155 0.73797 0.72641 0.72901 1.93530 1.67266 1.56813 1.79893 1.93578 1.75556 1.52397 1.74088 1.57549 1.73792 1.21857 1.29346 1.21126 1.02168 0.91476 0.88592 1.18967 0.90900 0.77076 0.98943 0.93574 1.22539 0.98462 1.01777 0.99230 1.22172 1.36551 0.94679 1.10979 0.91866 1.25699 0.95434 0.95109 1.00938 1.70860 1.39744 1.41215 1.01775 0.84224 0.77274 0.76570 0.75760 1.20829 1.19843 1.20121 1.21983 0.95727 0.95602 1.03210 1.22136 1.01132 0.94219 0.89913 0.91821 0.92569 0.92428 0.94987 0.90869 0.94591 0.90475 0.90972 0.90311 0.88926 0.92764 0.90928 0.90120 0.93215 0.93375 0.90979 0.93063 0.95589 0.91712 0.92171 0.90343 0.90705 0.94720 0.90117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.84 37.16 0.37 -0.63 16 2 C 0.05 0.38 5.68 -3.83 -0.02 0.36 16 3 N -0.54 -4.90 4.66 -234.66 -1.09 -6.00 16 4 C 0.06 0.53 5.46 -3.83 -0.02 0.51 16 5 C -0.12 -1.30 5.40 -26.65 -0.14 -1.45 16 6 C 0.15 1.84 2.58 -67.81 -0.17 1.67 16 7 N -1.01 -14.74 3.13 -114.48 -0.36 -15.10 16 8 C 0.08 1.07 9.67 59.84 0.58 1.65 16 9 S 2.77 54.20 6.05 -107.50 -0.65 53.55 16 10 O -0.99 -20.51 15.78 -57.17 -0.90 -21.41 16 11 O -0.97 -22.24 15.30 -57.17 -0.88 -23.11 16 12 N -0.98 -20.13 3.12 -115.85 -0.36 -20.49 16 13 C 0.11 2.01 9.47 59.84 0.57 2.58 16 14 C 0.25 5.71 2.20 -69.08 -0.15 5.56 16 15 H 0.05 1.12 5.57 -51.93 -0.29 0.83 16 16 C -0.16 -3.26 8.96 37.16 0.33 -2.93 16 17 C -0.60 -16.70 8.68 -34.44 -0.30 -17.00 16 18 H 0.06 1.88 7.75 -52.48 -0.41 1.48 16 19 C 0.03 0.97 5.30 -17.82 -0.09 0.88 16 20 N -0.90 -27.30 13.70 55.43 0.76 -26.54 16 21 Si 1.03 24.78 26.29 -169.99 -4.47 20.31 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -5.79 5.74 56.52 0.32 -5.47 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 C -0.13 -1.34 5.42 -26.64 -0.14 -1.48 16 26 C 0.05 0.51 5.29 -3.83 -0.02 0.49 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.38 6.43 -51.93 -0.33 0.05 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.03 0.24 8.12 -51.93 -0.42 -0.18 16 31 H 0.07 0.50 7.99 -51.93 -0.41 0.08 16 32 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.61 8.01 -51.93 -0.42 0.20 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.79 6.57 -51.93 -0.34 0.45 16 36 H 0.09 1.25 6.92 -51.93 -0.36 0.89 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.73 6.38 -51.93 -0.33 0.40 16 39 H 0.08 1.11 7.02 -51.93 -0.36 0.75 16 40 H 0.05 0.94 8.09 -51.93 -0.42 0.52 16 41 H 0.05 0.71 7.79 -51.93 -0.40 0.31 16 42 H 0.07 1.23 6.33 -51.93 -0.33 0.90 16 43 H 0.05 0.99 6.45 -51.93 -0.33 0.66 16 44 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.06 1.38 4.84 -51.93 -0.25 1.13 16 46 H 0.27 8.09 8.73 -40.82 -0.36 7.73 16 47 H 0.08 0.83 7.60 -51.93 -0.39 0.43 16 48 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.08 0.68 6.21 -51.92 -0.32 0.36 16 LS Contribution 383.87 15.07 5.78 5.78 Total: -1.00 -32.87 383.87 -10.14 -43.01 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -8.75 Total: -0.22 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: 0.77 Total: -9.79 kcal Atomic # 7 Polarization: -67.07 SS G_CDS: -1.05 Total: -68.13 kcal Atomic # 8 Polarization: -42.74 SS G_CDS: -1.78 Total: -44.52 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -4.47 Total: 20.31 kcal Atomic # 16 Polarization: 54.20 SS G_CDS: -0.65 Total: 53.55 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.87 -10.14 -43.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407977430.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.615 kcal (2) G-P(sol) polarization free energy of solvation -32.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds