Wall clock time and date at job start Tue Mar 31 2020 17:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.47414 * 2 1 4 4 C 1.46845 * 111.00259 * 170.00265 * 3 2 1 5 5 C 1.53037 * 109.52403 * 185.84019 * 4 3 2 6 6 C 1.53115 * 109.28002 * 300.82328 * 5 4 3 7 7 N 1.46502 * 109.52613 * 177.55767 * 6 5 4 8 8 C 1.46496 * 119.99974 * 300.12788 * 7 6 5 9 9 S 1.65596 * 119.99971 * 120.11953 * 7 6 5 10 10 O 1.42103 * 106.40573 * 336.46876 * 9 7 6 11 11 O 1.42095 * 106.40333 * 203.54405 * 9 7 6 12 12 N 1.65601 * 107.21468 * 90.00361 * 9 7 6 13 13 C 1.46496 * 120.00282 * 270.00027 * 12 9 7 14 14 C 1.46506 * 119.99962 * 90.00041 * 12 9 7 15 15 H 1.09000 * 109.46935 * 359.97438 * 14 12 9 16 16 C 1.52999 * 109.47300 * 239.99939 * 14 12 9 17 17 C 1.50699 * 109.47257 * 119.99824 * 14 12 9 18 18 H 1.08007 * 119.99988 * 5.62300 * 17 14 12 19 19 C 1.37875 * 119.99986 * 185.61754 * 17 14 12 20 20 N 1.31520 * 119.99906 * 196.95681 * 19 17 14 21 21 Si 1.86801 * 120.00016 * 17.23798 * 19 17 14 22 22 H 1.48498 * 109.46871 * 179.72225 * 21 19 17 23 23 H 1.48500 * 109.46852 * 299.72216 * 21 19 17 24 24 H 1.48501 * 109.47068 * 59.72265 * 21 19 17 25 25 C 1.53124 * 109.21651 * 57.61858 * 6 5 4 26 26 C 1.46848 * 110.99977 * 294.21517 * 3 2 1 27 27 H 1.09006 * 109.46666 * 299.99793 * 1 2 3 28 28 H 1.09000 * 109.47323 * 59.99490 * 1 2 3 29 29 H 1.09006 * 109.47141 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46666 * 240.00207 * 2 1 3 31 31 H 1.09000 * 109.47323 * 120.00510 * 2 1 3 32 32 H 1.08999 * 109.45866 * 65.82301 * 4 3 2 33 33 H 1.08998 * 109.45784 * 305.85484 * 4 3 2 34 34 H 1.08997 * 109.50396 * 180.87596 * 5 4 3 35 35 H 1.08999 * 109.49900 * 60.75959 * 5 4 3 36 36 H 1.08998 * 109.52071 * 297.68573 * 6 5 4 37 37 H 1.09004 * 109.47049 * 269.99691 * 8 7 6 38 38 H 1.09004 * 109.47400 * 29.99487 * 8 7 6 39 39 H 1.08997 * 109.47332 * 149.99438 * 8 7 6 40 40 H 1.09000 * 109.47496 * 270.00090 * 13 12 9 41 41 H 1.08997 * 109.47366 * 29.99851 * 13 12 9 42 42 H 1.09000 * 109.47560 * 150.00373 * 13 12 9 43 43 H 1.08998 * 109.47121 * 305.88946 * 16 14 12 44 44 H 1.08999 * 109.47185 * 65.88326 * 16 14 12 45 45 H 1.09000 * 109.47446 * 185.88606 * 16 14 12 46 46 H 0.96992 * 119.99961 * 355.08665 * 20 19 17 47 47 H 1.09000 * 109.49720 * 62.31870 * 25 6 5 48 48 H 1.08996 * 109.50230 * 182.43735 * 25 6 5 49 49 H 1.09004 * 109.46392 * 294.17487 * 26 3 2 50 50 H 1.09008 * 109.46444 * 54.15516 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4680 1.4310 0.2380 5 6 3.9175 2.8874 0.3761 6 6 3.5676 3.6483 -0.9057 7 7 3.9428 5.0566 -0.7570 8 6 3.3470 5.8647 0.3098 9 16 5.0405 5.7350 -1.7948 10 8 5.8200 4.6645 -2.3104 11 8 5.6027 6.8477 -1.1130 12 7 4.1891 6.3518 -3.0742 13 6 3.9227 5.5165 -4.2479 14 6 3.7021 7.7330 -3.0324 15 1 3.9939 8.1926 -2.0881 16 6 2.1769 7.7399 -3.1526 17 6 4.2997 8.5112 -4.1762 18 1 4.9015 8.0058 -4.9172 19 6 4.0780 9.8683 -4.2770 20 7 4.3002 10.4881 -5.4155 21 14 3.4697 10.8279 -2.7942 22 1 3.3183 12.2593 -3.1593 23 1 2.1573 10.2865 -2.3588 24 1 4.4501 10.7006 -1.6861 25 6 2.0609 3.5440 -1.1582 26 6 1.6650 2.0685 -1.2503 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.9887 0.9682 -0.6003 33 1 3.7028 0.8900 1.1546 34 1 4.9950 2.9219 0.5373 35 1 3.4075 3.3468 1.2228 36 1 4.1087 3.2139 -1.7463 37 1 2.4349 6.3354 -0.0572 38 1 3.1091 5.2255 1.1601 39 1 4.0535 6.6344 0.6204 40 1 4.7335 5.6315 -4.9672 41 1 3.8532 4.4725 -3.9426 42 1 2.9833 5.8241 -4.7072 43 1 1.8802 7.1883 -4.0447 44 1 1.7409 7.2681 -2.2721 45 1 1.8229 8.7681 -3.2267 46 1 4.6869 10.0058 -6.1628 47 1 1.5209 4.0141 -0.3363 48 1 1.8129 4.0474 -2.0926 49 1 2.1942 1.6027 -2.0817 50 1 0.5902 1.9907 -1.4146 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407977430.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:09 Heat of formation + Delta-G solvation = -92.357855 kcal Electronic energy + Delta-G solvation = -29499.512657 eV Core-core repulsion = 25687.642511 eV Total energy + Delta-G solvation = -3811.870147 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.38579 -38.50445 -38.06867 -37.38633 -36.97749 -34.63156 -33.63887 -31.89161 -31.58752 -30.18182 -27.47167 -27.35242 -26.61474 -24.81928 -24.02595 -22.42943 -22.20274 -20.59704 -19.93211 -19.60343 -18.90866 -18.43714 -17.60735 -16.89910 -16.21774 -16.14955 -15.63628 -15.55174 -15.39653 -15.24538 -15.03575 -14.76608 -14.66662 -14.35782 -14.14989 -14.03169 -13.78634 -13.56182 -13.47317 -13.41294 -13.30539 -13.16100 -12.96438 -12.82057 -12.62367 -12.55675 -12.48544 -12.22074 -12.13368 -12.08327 -11.90303 -11.80507 -11.56072 -11.50900 -11.31126 -11.14975 -10.45406 -10.01177 -9.84757 -9.25884 -8.71255 -6.36872 -0.48054 1.44029 1.57119 1.71257 1.91871 2.44450 2.47455 2.95370 3.07230 3.23915 3.60794 3.82267 3.91668 3.99092 4.11617 4.15234 4.31006 4.36926 4.42033 4.47008 4.51708 4.58675 4.63270 4.65983 4.68200 4.69075 4.73255 4.79738 4.83633 4.88230 4.90085 4.98031 4.99972 5.00504 5.03626 5.16602 5.18540 5.24985 5.29886 5.41036 5.46558 5.54003 5.64087 5.85326 5.97860 6.04948 6.15600 6.18609 6.60258 7.40570 8.63922 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.020033 B = 0.003633 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.326999 B = 7705.508179 C = 7978.235098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 N -0.544 5.544 4 C 0.060 3.940 5 C -0.120 4.120 6 C 0.143 3.857 7 N -0.996 5.996 8 C 0.077 3.923 9 S 2.784 3.216 10 O -1.010 7.010 11 O -1.011 7.011 12 N -0.993 5.993 13 C 0.110 3.890 14 C 0.246 3.754 15 H 0.041 0.959 16 C -0.154 4.154 17 C -0.608 4.608 18 H 0.023 0.977 19 C -0.016 4.016 20 N -0.935 5.935 21 Si 1.064 2.936 22 H -0.286 1.286 23 H -0.222 1.222 24 H -0.274 1.274 25 C -0.120 4.120 26 C 0.056 3.944 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.031 0.969 31 H 0.081 0.919 32 H 0.030 0.970 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.104 0.896 39 H 0.066 0.934 40 H 0.026 0.974 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.055 0.945 44 H 0.065 0.935 45 H 0.056 0.944 46 H 0.252 0.748 47 H 0.085 0.915 48 H 0.072 0.928 49 H 0.030 0.970 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.746 -21.128 14.346 27.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.079 4.079 3 N -0.269 5.269 4 C -0.068 4.068 5 C -0.160 4.160 6 C 0.038 3.962 7 N -0.836 5.836 8 C -0.067 4.067 9 S 2.795 3.205 10 O -0.993 6.993 11 O -0.994 6.994 12 N -0.834 5.834 13 C -0.036 4.036 14 C 0.141 3.859 15 H 0.058 0.942 16 C -0.213 4.213 17 C -0.647 4.647 18 H 0.042 0.958 19 C -0.215 4.215 20 N -0.571 5.571 21 Si 0.885 3.115 22 H -0.211 1.211 23 H -0.145 1.145 24 H -0.199 1.199 25 C -0.159 4.159 26 C -0.072 4.072 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.049 0.951 31 H 0.100 0.900 32 H 0.048 0.952 33 H 0.111 0.889 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.122 0.878 39 H 0.085 0.915 40 H 0.045 0.955 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.061 0.939 47 H 0.104 0.896 48 H 0.091 0.909 49 H 0.048 0.952 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.499 -19.355 15.323 26.826 hybrid contribution 1.403 -1.575 -2.156 3.017 sum -9.095 -20.931 13.167 26.347 Atomic orbital electron populations 1.21781 0.94139 1.02147 1.02253 1.22119 0.96701 0.87984 1.01049 1.62016 1.13546 1.16351 1.35003 1.22045 0.87445 0.95902 1.01443 1.21915 1.01169 0.95153 0.97764 1.21123 0.96899 0.78897 0.99320 1.57768 1.62309 1.18929 1.44636 1.21747 0.98891 0.95484 0.90592 1.01610 0.74090 0.71908 0.72874 1.93497 1.68377 1.56989 1.80486 1.93522 1.76959 1.54175 1.74790 1.57509 1.73814 1.21253 1.30804 1.21244 1.01657 0.92964 0.87731 1.18795 0.92838 0.77902 0.96401 0.94171 1.22379 0.95608 1.01822 1.01446 1.22425 1.35584 0.95245 1.11421 0.95823 1.27075 0.95440 0.96584 1.02399 1.70990 1.42222 1.41428 1.02466 0.83897 0.79469 0.75428 0.72703 1.21146 1.14498 1.19925 1.21937 0.94007 0.96607 1.03354 1.22123 1.01786 0.93328 0.89998 0.92209 0.92776 0.91288 0.95089 0.90050 0.95184 0.88949 0.91676 0.89296 0.90362 0.91386 0.87766 0.91509 0.95521 0.90172 0.90057 0.92565 0.91603 0.92553 0.93917 0.89615 0.90921 0.95158 0.88937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.84 71.98 0.71 -0.81 16 2 C 0.05 0.59 5.68 86.30 0.49 1.08 16 3 N -0.54 -8.21 4.66 -896.34 -4.18 -12.39 16 4 C 0.06 0.94 5.46 86.33 0.47 1.42 16 5 C -0.12 -2.22 5.40 30.65 0.17 -2.06 16 6 C 0.14 3.20 2.58 45.07 0.12 3.31 16 7 N -1.00 -26.96 3.13 -516.10 -1.62 -28.58 16 8 C 0.08 1.72 9.67 127.77 1.24 2.96 16 9 S 2.78 107.33 6.05 -56.49 -0.34 106.99 16 10 O -1.01 -41.78 15.78 -128.00 -2.02 -43.80 16 11 O -1.01 -46.33 15.30 -128.00 -1.96 -48.29 16 12 N -0.99 -40.10 3.12 -520.45 -1.62 -41.72 16 13 C 0.11 3.89 9.47 127.77 1.21 5.10 16 14 C 0.25 11.21 2.20 44.24 0.10 11.31 16 15 H 0.04 1.91 5.57 -2.39 -0.01 1.89 16 16 C -0.15 -5.77 8.96 71.98 0.64 -5.12 16 17 C -0.61 -34.35 8.68 25.60 0.22 -34.13 16 18 H 0.02 1.48 7.75 -2.91 -0.02 1.46 16 19 C -0.02 -0.93 5.30 84.65 0.45 -0.48 16 20 N -0.94 -58.49 13.70 21.45 0.29 -58.20 16 21 Si 1.06 49.03 26.29 68.60 1.80 50.84 16 22 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 23 H -0.22 -8.41 5.74 99.48 0.57 -7.84 16 24 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 25 C -0.12 -2.15 5.42 30.65 0.17 -1.98 16 26 C 0.06 0.88 5.29 86.33 0.46 1.34 16 27 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 28 H 0.05 0.58 6.43 -2.39 -0.02 0.57 16 29 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.03 0.39 8.12 -2.38 -0.02 0.37 16 31 H 0.08 0.86 7.99 -2.39 -0.02 0.84 16 32 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.09 1.18 8.01 -2.39 -0.02 1.16 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.09 1.47 6.57 -2.39 -0.02 1.45 16 36 H 0.08 1.99 6.92 -2.39 -0.02 1.97 16 37 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.10 1.67 6.38 -2.38 -0.02 1.65 16 39 H 0.07 1.71 7.02 -2.39 -0.02 1.69 16 40 H 0.03 1.04 8.09 -2.39 -0.02 1.02 16 41 H 0.08 2.28 7.79 -2.39 -0.02 2.26 16 42 H 0.08 2.70 6.33 -2.39 -0.02 2.68 16 43 H 0.06 2.04 6.45 -2.39 -0.02 2.02 16 44 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.06 2.21 4.84 -2.39 -0.01 2.20 16 46 H 0.25 16.02 8.73 -92.71 -0.81 15.21 16 47 H 0.09 1.45 7.60 -2.39 -0.02 1.43 16 48 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.03 0.50 8.14 -2.38 -0.02 0.48 16 50 H 0.09 1.26 6.21 -2.38 -0.01 1.24 16 Total: -1.00 -73.69 383.87 -2.47 -76.17 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.73 Total: 17.05 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: 6.43 Total: -18.07 kcal Atomic # 7 Polarization: -133.76 SS G_CDS: -7.12 Total: -140.88 kcal Atomic # 8 Polarization: -88.11 SS G_CDS: -3.98 Total: -92.09 kcal Atomic # 14 Polarization: 49.03 SS G_CDS: 1.80 Total: 50.84 kcal Atomic # 16 Polarization: 107.33 SS G_CDS: -0.34 Total: 106.99 kcal Total: -73.69 -2.47 -76.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407977430.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.192 kcal (2) G-P(sol) polarization free energy of solvation -73.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds