Wall clock time and date at job start Tue Mar 31 2020 17:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46493 * 109.47439 * 2 1 4 4 C 1.46507 * 119.99922 * 274.99919 * 3 2 1 5 5 C 1.50700 * 109.47127 * 280.04620 * 4 3 2 6 6 H 1.08001 * 120.00111 * 4.20306 * 5 4 3 7 7 C 1.37872 * 120.00192 * 184.19762 * 5 4 3 8 8 N 1.31513 * 120.00586 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99738 * 0.02562 * 7 5 4 10 10 H 1.48507 * 109.47480 * 89.99705 * 9 7 5 11 11 H 1.48504 * 109.47087 * 209.99675 * 9 7 5 12 12 H 1.48502 * 109.47087 * 329.99422 * 9 7 5 13 13 S 1.65601 * 120.00046 * 95.00152 * 3 2 1 14 14 O 1.42092 * 106.40070 * 330.34342 * 13 3 2 15 15 O 1.42104 * 106.40026 * 197.42229 * 13 3 2 16 16 N 1.65604 * 107.21926 * 83.88458 * 13 3 2 17 17 C 1.46499 * 119.99795 * 65.28669 * 16 13 3 18 18 C 1.53006 * 109.46867 * 165.49952 * 17 16 13 19 19 C 1.52995 * 109.47204 * 180.02562 * 18 17 16 20 20 C 1.53001 * 109.47411 * 179.97438 * 19 18 17 21 21 N 1.46894 * 109.47218 * 179.97438 * 20 19 18 22 22 C 1.46897 * 110.99923 * 66.04927 * 21 20 19 23 23 C 1.46898 * 110.99978 * 189.99894 * 21 20 19 24 24 C 1.53000 * 117.50080 * 243.75068 * 23 21 20 25 25 C 1.53002 * 117.50081 * 175.08696 * 23 21 20 26 26 H 1.08990 * 109.47755 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46613 * 300.00504 * 1 2 3 28 28 H 1.08999 * 109.46733 * 59.99676 * 1 2 3 29 29 H 1.09003 * 109.46613 * 239.99496 * 2 1 3 30 30 H 1.08999 * 109.46733 * 120.00324 * 2 1 3 31 31 H 1.08992 * 109.47122 * 40.04857 * 4 3 2 32 32 H 1.09001 * 109.46839 * 160.04931 * 4 3 2 33 33 H 0.96988 * 120.00553 * 180.02562 * 8 7 5 34 34 H 0.97000 * 119.99796 * 245.28983 * 16 13 3 35 35 H 1.09000 * 109.47060 * 45.50200 * 17 16 13 36 36 H 1.08993 * 109.47815 * 285.49878 * 17 16 13 37 37 H 1.08997 * 109.47349 * 59.99806 * 18 17 16 38 38 H 1.09004 * 109.46559 * 300.00099 * 18 17 16 39 39 H 1.09003 * 109.46860 * 300.00100 * 19 18 17 40 40 H 1.08997 * 109.47425 * 59.99486 * 19 18 17 41 41 H 1.09003 * 109.46977 * 300.00362 * 20 19 18 42 42 H 1.09000 * 109.46772 * 59.99954 * 20 19 18 43 43 H 1.09002 * 109.47281 * 60.00090 * 22 21 20 44 44 H 1.09003 * 109.47272 * 179.97438 * 22 21 20 45 45 H 1.09003 * 109.47353 * 299.99686 * 22 21 20 46 46 H 1.08999 * 115.54794 * 29.42041 * 23 21 20 47 47 H 1.09001 * 117.49928 * 359.97438 * 24 23 21 48 48 H 1.09000 * 117.49679 * 145.02341 * 24 23 21 49 49 H 1.09005 * 117.50275 * 214.98169 * 25 23 21 50 50 H 1.09000 * 117.49676 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1584 2.1086 -1.2640 5 6 3.4386 1.6946 -1.9427 6 1 4.0495 0.9143 -1.5135 7 6 3.8300 2.3120 -3.1117 8 7 4.9474 1.9511 -3.7038 9 14 2.7736 3.6621 -3.8538 10 1 3.1967 4.9774 -3.3094 11 1 2.9355 3.6622 -5.3300 12 1 1.3489 3.4201 -3.5121 13 16 2.4123 2.1201 1.4287 14 8 1.5810 1.5387 2.4236 15 8 2.4465 3.5156 1.1625 16 7 3.9644 1.6765 1.7984 17 6 5.0719 2.0999 0.9381 18 6 6.3980 1.8822 1.6696 19 6 7.5547 2.3251 0.7714 20 6 8.8807 2.1080 1.5031 21 7 9.9912 2.5326 0.6405 22 6 9.9532 3.9827 0.4090 23 6 11.2836 2.1236 1.2065 24 6 12.2565 3.2303 1.6184 25 6 12.5370 2.3895 0.3703 26 1 -0.3634 -1.0275 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.3127 1.8777 -1.9116 32 1 2.1823 3.1801 -1.0657 33 1 5.2229 2.3857 -4.5260 34 1 4.1401 1.1362 2.5846 35 1 4.9600 3.1567 0.6955 36 1 5.0633 1.5134 0.0194 37 1 6.5099 0.8255 1.9123 38 1 6.4066 2.4689 2.5883 39 1 7.5461 1.7388 -0.1475 40 1 7.4426 3.3818 0.5291 41 1 8.8889 2.6945 2.4219 42 1 8.9930 1.0513 1.7457 43 1 10.0319 4.5051 1.3624 44 1 10.7865 4.2703 -0.2322 45 1 9.0134 4.2490 -0.0748 46 1 11.2658 1.2179 1.8127 47 1 11.9378 4.2619 1.4689 48 1 12.8791 3.0525 2.4952 49 1 13.3440 1.6589 0.4266 50 1 12.4026 2.8675 -0.6000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416506565.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:58 Heat of formation + Delta-G solvation = -52.861022 kcal Electronic energy + Delta-G solvation = -27888.267680 eV Core-core repulsion = 24078.110244 eV Total energy + Delta-G solvation = -3810.157436 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.05843 -36.76037 -36.31483 -36.08296 -35.25727 -34.41830 -32.63254 -31.62925 -30.20470 -27.71279 -27.12649 -25.97035 -22.92973 -22.63700 -22.36671 -21.54354 -20.84968 -20.10690 -18.70179 -17.29067 -16.91651 -16.84140 -16.63438 -15.89221 -15.68353 -15.23761 -14.91368 -14.25291 -14.22385 -14.03668 -13.88974 -13.38315 -13.03092 -12.78838 -12.58330 -12.46553 -12.25769 -12.12946 -12.01114 -11.91859 -11.83916 -11.56709 -11.53160 -11.38492 -11.31314 -11.13507 -11.13178 -11.00476 -10.94885 -10.69201 -10.52365 -10.39957 -10.37496 -10.24876 -10.14509 -9.61744 -8.88813 -8.63775 -8.21367 -8.10820 -6.15450 -4.15776 1.26442 3.27240 3.34225 3.38557 3.46366 3.55711 3.89182 4.13376 4.36178 4.65871 4.75685 4.85055 4.93872 5.03919 5.12715 5.16720 5.21445 5.33430 5.37783 5.39680 5.44461 5.53846 5.63830 5.67642 5.69507 5.72155 5.76764 5.79349 5.90096 5.95014 6.02131 6.03481 6.09069 6.24250 6.28706 6.50301 6.50778 6.57678 6.63380 6.74803 6.88875 6.95860 7.04161 7.12564 7.30237 7.51208 7.59207 8.41284 8.86226 9.45559 10.95963 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011397 B = 0.003348 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.288646 B = 8360.086530 C = 9977.139006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.132 3.868 3 N -0.987 5.987 4 C 0.213 3.787 5 C -0.541 4.541 6 H 0.083 0.917 7 C 0.079 3.921 8 N -0.889 5.889 9 Si 0.866 3.134 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.265 1.265 13 S 2.787 3.213 14 O -1.000 7.000 15 O -0.983 6.983 16 N -1.130 6.130 17 C 0.116 3.884 18 C -0.118 4.118 19 C -0.117 4.117 20 C 0.060 3.940 21 N -0.509 5.509 22 C 0.017 3.983 23 C 0.023 3.977 24 C -0.223 4.223 25 C -0.172 4.172 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.033 0.967 32 H 0.044 0.956 33 H 0.265 0.735 34 H 0.405 0.595 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.032 0.968 42 H 0.074 0.926 43 H 0.029 0.971 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.116 0.884 47 H 0.099 0.901 48 H 0.091 0.909 49 H 0.095 0.905 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.063 -1.391 10.376 13.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.005 3.995 3 N -0.827 5.827 4 C 0.089 3.911 5 C -0.580 4.580 6 H 0.101 0.899 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.693 3.307 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.189 1.189 13 S 2.795 3.205 14 O -0.984 6.984 15 O -0.967 6.967 16 N -0.889 5.889 17 C -0.010 4.010 18 C -0.158 4.158 19 C -0.156 4.156 20 C -0.067 4.067 21 N -0.230 5.230 22 C -0.131 4.131 23 C -0.086 4.086 24 C -0.262 4.262 25 C -0.210 4.210 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.237 0.763 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.051 0.949 42 H 0.092 0.908 43 H 0.047 0.953 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.134 0.866 47 H 0.117 0.883 48 H 0.109 0.891 49 H 0.114 0.886 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.496 -0.877 10.074 12.587 hybrid contribution 0.115 0.634 0.269 0.698 sum 7.611 -0.243 10.343 12.844 Atomic orbital electron populations 1.22221 0.96976 1.01490 1.02342 1.20975 0.93510 0.82547 1.02451 1.57509 1.78895 1.23076 1.23262 1.19580 0.98198 0.92266 0.81024 1.21409 1.05922 1.22158 1.08484 0.89863 1.24816 0.94698 0.96428 0.96505 1.69877 1.21929 1.42050 1.18830 0.87002 0.81784 0.83300 0.78633 1.19745 1.21135 1.18940 1.01637 0.72661 0.73631 0.72539 1.93550 1.65917 1.79608 1.59323 1.93559 1.86743 1.31129 1.85268 1.55921 1.25290 1.69975 1.37711 1.21458 0.84337 1.01486 0.93674 1.21679 0.94062 1.01458 0.98614 1.21545 0.91669 1.02679 0.99688 1.22167 0.90477 1.00421 0.93644 1.61814 1.00920 1.14481 1.45814 1.22563 1.03339 0.87174 1.00048 1.22674 0.86284 0.98822 1.00848 1.23571 1.05244 0.97993 0.99388 1.23059 0.98948 1.03103 0.95881 0.92259 0.92450 0.92294 0.89829 0.91892 0.94891 0.93772 0.92501 0.76267 0.90737 0.88754 0.91679 0.92202 0.89753 0.91517 0.94936 0.90787 0.95280 0.91489 0.90303 0.86630 0.88281 0.89082 0.88623 0.88474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 10.24 37.16 0.38 -2.20 16 2 C 0.13 2.20 6.02 -4.05 -0.02 2.17 16 3 N -0.99 -19.30 2.84 -115.67 -0.33 -19.63 16 4 C 0.21 4.83 4.53 -5.19 -0.02 4.81 16 5 C -0.54 -13.64 9.04 -34.44 -0.31 -13.95 16 6 H 0.08 2.20 6.71 -52.49 -0.35 1.85 16 7 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.89 -24.98 13.96 55.43 0.77 -24.21 16 9 Si 0.87 20.48 27.39 -169.99 -4.66 15.83 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.26 -6.04 6.66 56.52 0.38 -5.66 16 13 S 2.79 53.13 6.07 -107.50 -0.65 52.48 16 14 O -1.00 -19.67 17.17 -57.17 -0.98 -20.66 16 15 O -0.98 -21.93 16.01 -57.17 -0.92 -22.84 16 16 N -1.13 -17.86 6.06 -10.61 -0.06 -17.92 16 17 C 0.12 1.93 6.20 -4.04 -0.03 1.91 16 18 C -0.12 -1.54 5.35 -26.73 -0.14 -1.68 16 19 C -0.12 -1.57 5.14 -26.73 -0.14 -1.71 16 20 C 0.06 0.70 4.93 -3.83 -0.02 0.68 16 21 N -0.51 -6.15 4.97 -234.89 -1.17 -7.32 16 22 C 0.02 0.19 7.96 60.06 0.48 0.66 16 23 C 0.02 0.24 6.10 -67.71 -0.41 -0.17 16 24 C -0.22 -1.98 9.51 -26.69 -0.25 -2.23 16 25 C -0.17 -1.60 9.99 -26.69 -0.27 -1.87 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.90 7.97 -51.93 -0.41 0.49 16 28 H 0.06 0.91 8.10 -51.93 -0.42 0.48 16 29 H 0.08 1.42 8.09 -51.93 -0.42 1.00 16 30 H 0.06 0.93 7.78 -51.93 -0.40 0.53 16 31 H 0.03 0.74 7.45 -51.93 -0.39 0.35 16 32 H 0.04 1.06 5.97 -51.93 -0.31 0.75 16 33 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.41 5.20 8.65 -34.47 -0.30 4.90 16 35 H 0.07 1.37 7.75 -51.93 -0.40 0.97 16 36 H 0.09 1.81 5.84 -51.93 -0.30 1.51 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.07 0.93 6.55 -51.93 -0.34 0.59 16 41 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 42 H 0.07 0.80 7.96 -51.93 -0.41 0.39 16 43 H 0.03 0.30 7.23 -51.93 -0.38 -0.08 16 44 H 0.07 0.70 6.63 -51.93 -0.34 0.36 16 45 H 0.08 0.95 6.47 -51.93 -0.34 0.62 16 46 H 0.12 1.07 7.93 -51.93 -0.41 0.66 16 47 H 0.10 0.89 5.89 -51.93 -0.31 0.59 16 48 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 49 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.10 0.97 7.56 -51.93 -0.39 0.57 16 LS Contribution 401.65 15.07 6.05 6.05 Total: -1.00 -30.62 401.65 -11.55 -42.17 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -8.75 Total: 7.63 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -0.86 Total: -11.58 kcal Atomic # 7 Polarization: -68.29 SS G_CDS: -0.79 Total: -69.08 kcal Atomic # 8 Polarization: -41.60 SS G_CDS: -1.90 Total: -43.50 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.66 Total: 15.83 kcal Atomic # 16 Polarization: 53.13 SS G_CDS: -0.65 Total: 52.48 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.62 -11.55 -42.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416506565.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.693 kcal (2) G-P(sol) polarization free energy of solvation -30.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds