Wall clock time and date at job start Tue Mar 31 2020 17:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46493 * 109.47439 * 2 1 4 4 C 1.46507 * 119.99922 * 274.99919 * 3 2 1 5 5 C 1.50700 * 109.47127 * 280.04620 * 4 3 2 6 6 H 1.08001 * 120.00111 * 4.20306 * 5 4 3 7 7 C 1.37872 * 120.00192 * 184.19762 * 5 4 3 8 8 N 1.31513 * 120.00586 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99738 * 0.02562 * 7 5 4 10 10 H 1.48507 * 109.47480 * 89.99705 * 9 7 5 11 11 H 1.48504 * 109.47087 * 209.99675 * 9 7 5 12 12 H 1.48502 * 109.47087 * 329.99422 * 9 7 5 13 13 S 1.65601 * 120.00046 * 95.00152 * 3 2 1 14 14 O 1.42092 * 106.40070 * 330.34342 * 13 3 2 15 15 O 1.42104 * 106.40026 * 197.42229 * 13 3 2 16 16 N 1.65604 * 107.21926 * 83.88458 * 13 3 2 17 17 C 1.46499 * 119.99795 * 65.28669 * 16 13 3 18 18 C 1.53006 * 109.46867 * 165.49952 * 17 16 13 19 19 C 1.52995 * 109.47204 * 180.02562 * 18 17 16 20 20 C 1.53001 * 109.47411 * 179.97438 * 19 18 17 21 21 N 1.46894 * 109.47218 * 179.97438 * 20 19 18 22 22 C 1.46897 * 110.99923 * 66.04927 * 21 20 19 23 23 C 1.46898 * 110.99978 * 189.99894 * 21 20 19 24 24 C 1.53000 * 117.50080 * 243.75068 * 23 21 20 25 25 C 1.53002 * 117.50081 * 175.08696 * 23 21 20 26 26 H 1.08990 * 109.47755 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46613 * 300.00504 * 1 2 3 28 28 H 1.08999 * 109.46733 * 59.99676 * 1 2 3 29 29 H 1.09003 * 109.46613 * 239.99496 * 2 1 3 30 30 H 1.08999 * 109.46733 * 120.00324 * 2 1 3 31 31 H 1.08992 * 109.47122 * 40.04857 * 4 3 2 32 32 H 1.09001 * 109.46839 * 160.04931 * 4 3 2 33 33 H 0.96988 * 120.00553 * 180.02562 * 8 7 5 34 34 H 0.97000 * 119.99796 * 245.28983 * 16 13 3 35 35 H 1.09000 * 109.47060 * 45.50200 * 17 16 13 36 36 H 1.08993 * 109.47815 * 285.49878 * 17 16 13 37 37 H 1.08997 * 109.47349 * 59.99806 * 18 17 16 38 38 H 1.09004 * 109.46559 * 300.00099 * 18 17 16 39 39 H 1.09003 * 109.46860 * 300.00100 * 19 18 17 40 40 H 1.08997 * 109.47425 * 59.99486 * 19 18 17 41 41 H 1.09003 * 109.46977 * 300.00362 * 20 19 18 42 42 H 1.09000 * 109.46772 * 59.99954 * 20 19 18 43 43 H 1.09002 * 109.47281 * 60.00090 * 22 21 20 44 44 H 1.09003 * 109.47272 * 179.97438 * 22 21 20 45 45 H 1.09003 * 109.47353 * 299.99686 * 22 21 20 46 46 H 1.08999 * 115.54794 * 29.42041 * 23 21 20 47 47 H 1.09001 * 117.49928 * 359.97438 * 24 23 21 48 48 H 1.09000 * 117.49679 * 145.02341 * 24 23 21 49 49 H 1.09005 * 117.50275 * 214.98169 * 25 23 21 50 50 H 1.09000 * 117.49676 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1584 2.1086 -1.2640 5 6 3.4386 1.6946 -1.9427 6 1 4.0495 0.9143 -1.5135 7 6 3.8300 2.3120 -3.1117 8 7 4.9474 1.9511 -3.7038 9 14 2.7736 3.6621 -3.8538 10 1 3.1967 4.9774 -3.3094 11 1 2.9355 3.6622 -5.3300 12 1 1.3489 3.4201 -3.5121 13 16 2.4123 2.1201 1.4287 14 8 1.5810 1.5387 2.4236 15 8 2.4465 3.5156 1.1625 16 7 3.9644 1.6765 1.7984 17 6 5.0719 2.0999 0.9381 18 6 6.3980 1.8822 1.6696 19 6 7.5547 2.3251 0.7714 20 6 8.8807 2.1080 1.5031 21 7 9.9912 2.5326 0.6405 22 6 9.9532 3.9827 0.4090 23 6 11.2836 2.1236 1.2065 24 6 12.2565 3.2303 1.6184 25 6 12.5370 2.3895 0.3703 26 1 -0.3634 -1.0275 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.3127 1.8777 -1.9116 32 1 2.1823 3.1801 -1.0657 33 1 5.2229 2.3857 -4.5260 34 1 4.1401 1.1362 2.5846 35 1 4.9600 3.1567 0.6955 36 1 5.0633 1.5134 0.0194 37 1 6.5099 0.8255 1.9123 38 1 6.4066 2.4689 2.5883 39 1 7.5461 1.7388 -0.1475 40 1 7.4426 3.3818 0.5291 41 1 8.8889 2.6945 2.4219 42 1 8.9930 1.0513 1.7457 43 1 10.0319 4.5051 1.3624 44 1 10.7865 4.2703 -0.2322 45 1 9.0134 4.2490 -0.0748 46 1 11.2658 1.2179 1.8127 47 1 11.9378 4.2619 1.4689 48 1 12.8791 3.0525 2.4952 49 1 13.3440 1.6589 0.4266 50 1 12.4026 2.8675 -0.6000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416506565.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:57 Heat of formation + Delta-G solvation = -74.888100 kcal Electronic energy + Delta-G solvation = -27889.222846 eV Core-core repulsion = 24078.110244 eV Total energy + Delta-G solvation = -3811.112601 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.89208 -38.34712 -37.77619 -37.41416 -36.89134 -35.45293 -34.59870 -32.72030 -31.76379 -28.92134 -28.69749 -27.00834 -24.57362 -23.63798 -23.24586 -23.11639 -21.95667 -20.93666 -20.21992 -19.04037 -18.59498 -18.34853 -17.60555 -17.35554 -16.79242 -16.49243 -16.16696 -16.03308 -15.37359 -15.29147 -14.91756 -14.74706 -14.56497 -14.16228 -14.04931 -13.77332 -13.69182 -13.49979 -13.41745 -13.19724 -13.10968 -13.05194 -12.78516 -12.72379 -12.59952 -12.42480 -12.28339 -12.26007 -12.17300 -12.13166 -12.03428 -11.67433 -11.56541 -11.52629 -11.43045 -11.15209 -10.70325 -10.33402 -9.75570 -9.06194 -8.22066 -6.24378 -0.27810 1.37723 1.42588 1.48360 1.98786 2.38427 2.60584 2.73262 3.10749 3.12918 3.45022 3.85271 3.94225 3.98719 4.03862 4.08229 4.13209 4.19994 4.24942 4.38725 4.43515 4.48304 4.56198 4.62869 4.71123 4.72874 4.76081 4.79318 4.85245 4.90518 4.95169 5.00491 5.00897 5.05129 5.06190 5.11098 5.24316 5.25570 5.35708 5.41903 5.47387 5.49967 5.53436 5.83825 6.08455 6.18832 6.25009 6.38547 6.79936 7.39095 8.91550 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011397 B = 0.003348 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.288646 B = 8360.086530 C = 9977.139006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.991 5.991 4 C 0.220 3.780 5 C -0.528 4.528 6 H 0.064 0.936 7 C 0.031 3.969 8 N -0.929 5.929 9 Si 0.912 3.088 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.248 1.248 13 S 2.799 3.201 14 O -1.002 7.002 15 O -1.016 7.016 16 N -1.114 6.114 17 C 0.120 3.880 18 C -0.108 4.108 19 C -0.112 4.112 20 C 0.068 3.932 21 N -0.531 5.531 22 C 0.019 3.981 23 C 0.009 3.991 24 C -0.211 4.211 25 C -0.175 4.175 26 H 0.088 0.912 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.041 0.959 32 H 0.033 0.967 33 H 0.265 0.735 34 H 0.423 0.577 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.045 0.955 42 H 0.084 0.916 43 H 0.039 0.961 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.127 0.873 47 H 0.096 0.904 48 H 0.106 0.894 49 H 0.110 0.890 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.025 -1.978 12.069 14.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 N -0.832 5.832 4 C 0.095 3.905 5 C -0.567 4.567 6 H 0.082 0.918 7 C -0.169 4.169 8 N -0.568 5.568 9 Si 0.737 3.263 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.172 1.172 13 S 2.807 3.193 14 O -0.986 6.986 15 O -1.000 7.000 16 N -0.877 5.877 17 C -0.006 4.006 18 C -0.147 4.147 19 C -0.151 4.151 20 C -0.059 4.059 21 N -0.253 5.253 22 C -0.129 4.129 23 C -0.100 4.100 24 C -0.250 4.250 25 C -0.213 4.213 26 H 0.107 0.893 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.258 0.742 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.103 0.897 43 H 0.058 0.942 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.145 0.855 47 H 0.115 0.885 48 H 0.125 0.875 49 H 0.128 0.872 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.431 -1.489 11.796 14.021 hybrid contribution 0.164 0.746 -0.211 0.792 sum 7.594 -0.744 11.585 13.872 Atomic orbital electron populations 1.22199 0.95488 1.03301 1.01700 1.21242 0.94818 0.81013 1.03267 1.57473 1.79412 1.24193 1.22084 1.19325 0.96966 0.91952 0.82270 1.21571 1.06350 1.20832 1.07938 0.91807 1.25461 0.95680 0.98467 0.97281 1.69988 1.23657 1.43674 1.19520 0.86253 0.81327 0.80746 0.78014 1.20093 1.20790 1.17189 1.01165 0.73069 0.72868 0.72211 1.93541 1.66480 1.79429 1.59178 1.93518 1.87367 1.33421 1.85702 1.55561 1.23943 1.70000 1.38146 1.21312 0.86412 0.99460 0.93390 1.21614 0.91377 1.03127 0.98589 1.21457 0.93449 1.01347 0.98877 1.22071 0.89097 1.01277 0.93503 1.61777 1.02023 1.14776 1.46757 1.22514 1.02604 0.87254 1.00505 1.22789 0.85595 0.99883 1.01736 1.23589 1.04398 0.97415 0.99602 1.23115 0.98973 1.03585 0.95599 0.89280 0.93103 0.92869 0.90329 0.89810 0.94145 0.94865 0.92618 0.74180 0.92973 0.91687 0.89685 0.90064 0.92829 0.92681 0.93670 0.89733 0.94221 0.91126 0.91959 0.85547 0.88548 0.87517 0.87164 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.71 10.24 71.98 0.74 -3.98 16 2 C 0.12 3.88 6.02 86.38 0.52 4.40 16 3 N -0.99 -38.12 2.84 -519.85 -1.48 -39.60 16 4 C 0.22 9.92 4.53 85.63 0.39 10.31 16 5 C -0.53 -27.04 9.04 25.60 0.23 -26.81 16 6 H 0.06 3.47 6.71 -2.91 -0.02 3.46 16 7 C 0.03 1.67 5.47 84.65 0.46 2.14 16 8 N -0.93 -53.59 13.96 21.45 0.30 -53.29 16 9 Si 0.91 42.19 27.39 68.60 1.88 44.07 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.25 -10.73 6.66 99.48 0.66 -10.07 16 13 S 2.80 104.47 6.07 -56.49 -0.34 104.13 16 14 O -1.00 -37.68 17.17 -128.00 -2.20 -39.87 16 15 O -1.02 -45.28 16.01 -128.00 -2.05 -47.33 16 16 N -1.11 -34.08 6.06 -187.49 -1.14 -35.22 16 17 C 0.12 4.04 6.20 86.38 0.54 4.58 16 18 C -0.11 -2.68 5.35 30.59 0.16 -2.51 16 19 C -0.11 -3.06 5.14 30.59 0.16 -2.90 16 20 C 0.07 1.49 4.93 86.30 0.43 1.92 16 21 N -0.53 -12.59 4.97 -897.06 -4.46 -17.05 16 22 C 0.02 0.43 7.96 127.69 1.02 1.44 16 23 C 0.01 0.17 6.10 44.92 0.27 0.45 16 24 C -0.21 -3.36 9.51 30.62 0.29 -3.07 16 25 C -0.17 -3.04 9.99 30.62 0.31 -2.73 16 26 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.05 1.49 7.97 -2.39 -0.02 1.47 16 28 H 0.05 1.54 8.10 -2.39 -0.02 1.52 16 29 H 0.08 2.58 8.09 -2.39 -0.02 2.57 16 30 H 0.08 2.30 7.78 -2.39 -0.02 2.29 16 31 H 0.04 1.77 7.45 -2.39 -0.02 1.76 16 32 H 0.03 1.59 5.97 -2.39 -0.01 1.58 16 33 H 0.26 14.57 8.31 -92.72 -0.77 13.80 16 34 H 0.42 9.93 8.65 -96.74 -0.84 9.09 16 35 H 0.05 1.98 7.75 -2.39 -0.02 1.96 16 36 H 0.06 2.59 5.84 -2.39 -0.01 2.58 16 37 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.05 1.60 6.55 -2.39 -0.02 1.58 16 41 H 0.05 0.89 8.12 -2.39 -0.02 0.87 16 42 H 0.08 1.67 7.96 -2.39 -0.02 1.65 16 43 H 0.04 0.79 7.23 -2.39 -0.02 0.77 16 44 H 0.07 1.49 6.63 -2.39 -0.02 1.47 16 45 H 0.06 1.58 6.47 -2.39 -0.02 1.56 16 46 H 0.13 2.09 7.93 -2.39 -0.02 2.07 16 47 H 0.10 1.59 5.89 -2.39 -0.01 1.57 16 48 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 49 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 50 H 0.09 1.68 7.56 -2.39 -0.02 1.66 16 Total: -1.00 -65.97 401.65 -3.94 -69.91 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: 0.04 Total: 31.03 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: 5.51 Total: -16.77 kcal Atomic # 7 Polarization: -138.39 SS G_CDS: -6.77 Total: -145.16 kcal Atomic # 8 Polarization: -82.96 SS G_CDS: -4.25 Total: -87.21 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 1.88 Total: 44.07 kcal Atomic # 16 Polarization: 104.47 SS G_CDS: -0.34 Total: 104.13 kcal Total: -65.97 -3.94 -69.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416506565.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.982 kcal (2) G-P(sol) polarization free energy of solvation -65.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds