Wall clock time and date at job start Tue Mar 31 2020 18:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27725 * 3 2 1 5 5 H 1.48495 * 109.47159 * 0.27736 * 3 2 1 6 6 H 1.48505 * 109.47290 * 120.27720 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47274 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47096 * 305.00329 * 11 10 9 13 13 N 1.46903 * 109.46687 * 65.00348 * 11 10 9 14 14 C 1.50697 * 109.46971 * 184.99848 * 11 10 9 15 15 O 1.21283 * 120.00040 * 259.99759 * 14 11 10 16 16 N 1.34772 * 120.00246 * 80.00527 * 14 11 10 17 17 C 1.46495 * 120.00453 * 179.97438 * 16 14 11 18 18 H 1.08998 * 109.50032 * 325.07232 * 17 16 14 19 19 C 1.53125 * 109.50373 * 204.99789 * 17 16 14 20 20 C 1.53118 * 109.15872 * 182.39989 * 19 17 16 21 21 C 1.53041 * 109.27891 * 57.65687 * 20 19 17 22 22 N 1.46851 * 109.52047 * 300.81936 * 21 20 19 23 23 C 1.38413 * 110.99598 * 185.84067 * 22 21 20 24 24 N 1.32488 * 119.21719 * 123.68744 * 23 22 21 25 25 C 1.32275 * 120.73895 * 179.71558 * 24 23 22 26 26 C 1.38603 * 119.19918 * 0.54163 * 25 24 23 27 27 C 1.38608 * 118.55382 * 359.72853 * 26 25 24 28 28 N 1.32275 * 119.20053 * 0.02562 * 27 26 25 29 29 C 1.46844 * 111.19744 * 61.74377 * 22 21 20 30 30 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 31 31 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 32 32 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 33 33 H 1.09004 * 109.47330 * 299.99977 * 10 9 7 34 34 H 1.09005 * 109.47124 * 59.99773 * 10 9 7 35 35 H 1.00893 * 111.00236 * 59.99419 * 13 11 10 36 36 H 1.00896 * 110.99552 * 183.95831 * 13 11 10 37 37 H 0.97003 * 119.99563 * 359.97438 * 16 14 11 38 38 H 1.08992 * 109.52074 * 302.30580 * 19 17 16 39 39 H 1.09006 * 109.52060 * 62.43469 * 19 17 16 40 40 H 1.08997 * 109.50166 * 177.59707 * 20 19 17 41 41 H 1.09003 * 109.50809 * 297.71318 * 20 19 17 42 42 H 1.08999 * 109.46126 * 60.83575 * 21 20 19 43 43 H 1.09004 * 109.46481 * 180.80205 * 21 20 19 44 44 H 1.08007 * 120.39865 * 180.24811 * 25 24 23 45 45 H 1.07997 * 120.72330 * 179.75461 * 26 25 24 46 46 H 1.08000 * 120.40070 * 179.97438 * 27 26 25 47 47 H 1.09004 * 109.45757 * 178.24260 * 29 22 21 48 48 H 1.08993 * 109.46705 * 58.27511 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0979 1.6993 -1.2159 5 1 1.2843 2.7464 0.0068 6 1 3.1081 1.6934 1.2091 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2452 -3.6621 -0.0122 11 6 1.4801 -4.9872 -0.0116 12 1 0.7914 -5.0087 0.8330 13 7 0.7233 -5.1161 -1.2640 14 6 2.4552 -6.1301 0.1060 15 8 2.7829 -6.7518 -0.8825 16 7 2.9631 -6.4616 1.3096 17 6 3.9105 -7.5730 1.4240 18 1 3.6468 -8.3512 0.7078 19 6 3.8582 -8.1454 2.8432 20 6 4.8933 -9.2663 2.9715 21 6 6.2807 -8.7137 2.6369 22 7 6.2790 -8.1787 1.2693 23 6 7.5512 -7.7893 0.8876 24 7 8.0850 -8.3088 -0.2081 25 6 9.2963 -7.9539 -0.6037 26 6 10.0117 -7.0360 0.1491 27 6 9.4254 -6.5165 1.2926 28 7 8.2083 -6.9101 1.6296 29 6 5.3263 -7.0694 1.1343 30 1 -0.4849 0.8401 0.0041 31 1 0.6280 -2.5591 0.8866 32 1 0.6206 -2.5548 -0.8933 33 1 2.8685 -3.6025 -0.9044 34 1 2.8753 -3.6063 0.8756 35 1 1.3398 -5.0988 -2.0625 36 1 0.1589 -5.9524 -1.2609 37 1 2.7012 -5.9642 2.1001 38 1 4.0832 -7.3577 3.5622 39 1 2.8625 -8.5437 3.0388 40 1 4.8906 -9.6492 3.9921 41 1 4.6458 -10.0714 2.2796 42 1 6.5334 -7.9181 3.3378 43 1 7.0182 -9.5127 2.7135 44 1 9.7246 -8.3779 -1.5000 45 1 11.0041 -6.7319 -0.1490 46 1 9.9561 -5.7997 1.9016 47 1 5.3706 -6.6743 0.1193 48 1 5.5835 -6.2815 1.8421 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424140696.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:13 Heat of formation + Delta-G solvation = 18.417211 kcal Electronic energy + Delta-G solvation = -28592.609404 eV Core-core repulsion = 24682.391625 eV Total energy + Delta-G solvation = -3910.217780 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.56666 -40.09281 -38.70428 -35.46348 -34.97862 -34.02544 -33.28785 -32.78447 -30.90828 -30.13975 -29.84079 -26.35857 -25.56224 -24.84869 -24.09136 -23.01797 -22.47660 -20.61941 -20.36715 -19.62740 -18.20125 -17.82890 -17.08477 -16.48451 -16.21415 -15.91859 -15.76065 -15.39387 -15.22178 -14.71904 -14.57291 -14.38490 -14.26616 -13.92566 -13.87303 -13.64282 -13.52225 -13.19653 -12.89335 -12.30658 -12.03168 -11.87327 -11.54397 -11.47653 -11.27966 -11.15174 -11.06274 -10.88081 -10.83949 -10.65859 -10.56717 -10.10009 -9.91647 -9.79919 -9.77778 -9.36003 -9.11388 -9.00365 -8.84040 -8.33658 -8.18842 -5.93456 -3.95605 0.47591 0.76400 2.68630 2.86468 3.30338 3.35796 3.40308 3.40630 3.43013 3.85375 4.24076 4.35623 4.46317 4.50292 4.52490 4.63640 4.71913 4.73975 4.87065 4.94043 5.07831 5.16031 5.21770 5.31392 5.32688 5.41909 5.45762 5.52854 5.55299 5.57621 5.73631 5.77853 5.85009 5.89472 6.03634 6.35434 6.43963 6.45026 6.59366 6.66895 6.93151 7.09542 7.39884 7.62015 7.76312 7.79923 7.82282 7.96913 8.13877 8.34397 8.48936 9.12187 9.67339 11.17422 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010613 B = 0.002801 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.725385 B = 9993.009301 C =11489.943209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.523 4.523 8 H 0.051 0.949 9 C 0.032 3.968 10 C -0.095 4.095 11 C 0.079 3.921 12 H 0.098 0.902 13 N -0.807 5.807 14 C 0.483 3.517 15 O -0.548 6.548 16 N -0.727 5.727 17 C 0.150 3.850 18 H 0.097 0.903 19 C -0.130 4.130 20 C -0.111 4.111 21 C 0.064 3.936 22 N -0.472 5.472 23 C 0.490 3.510 24 N -0.492 5.492 25 C 0.157 3.843 26 C -0.236 4.236 27 C 0.159 3.841 28 N -0.542 5.542 29 C 0.060 3.940 30 H 0.260 0.740 31 H 0.013 0.987 32 H 0.035 0.965 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.348 0.652 36 H 0.334 0.666 37 H 0.404 0.596 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.172 0.828 45 H 0.150 0.850 46 H 0.168 0.832 47 H 0.080 0.920 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.840 -20.072 6.870 27.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.562 4.562 8 H 0.069 0.931 9 C -0.005 4.005 10 C -0.133 4.133 11 C -0.037 4.037 12 H 0.116 0.884 13 N -0.335 5.335 14 C 0.269 3.731 15 O -0.425 6.425 16 N -0.379 5.379 17 C 0.044 3.956 18 H 0.115 0.885 19 C -0.168 4.168 20 C -0.149 4.149 21 C -0.063 4.063 22 N -0.197 5.197 23 C 0.135 3.865 24 N -0.207 5.207 25 C -0.011 4.011 26 C -0.258 4.258 27 C -0.009 4.009 28 N -0.260 5.260 29 C -0.068 4.068 30 H 0.070 0.930 31 H 0.031 0.969 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.162 0.838 36 H 0.146 0.854 37 H 0.238 0.762 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.073 0.927 43 H 0.093 0.907 44 H 0.189 0.811 45 H 0.168 0.832 46 H 0.185 0.815 47 H 0.098 0.902 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 15.452 -20.369 6.297 26.331 hybrid contribution 2.243 1.237 0.468 2.604 sum 17.695 -19.132 6.765 26.924 Atomic orbital electron populations 1.69965 1.05933 1.26522 1.50742 1.24988 0.94806 0.99017 0.95480 0.86716 0.79621 0.83460 0.78510 1.20336 1.21302 1.20386 1.21246 0.92834 0.91378 1.50717 0.93111 1.19004 0.93544 0.89766 0.98193 1.21651 0.98831 0.92253 1.00574 1.21843 0.93496 0.93210 0.95188 0.88390 1.58996 1.26891 1.44295 1.03288 1.22810 0.82044 0.85634 0.82609 1.90669 1.61230 1.53929 1.36678 1.46191 1.45983 1.35073 1.10654 1.20817 0.87243 0.89625 0.97909 0.88462 1.21899 1.00339 0.98778 0.95777 1.21535 0.92964 0.98217 1.02213 1.22149 0.98503 0.99256 0.86435 1.59028 1.01269 1.33332 1.26119 1.21030 0.91084 0.87249 0.87174 1.68112 1.12143 1.25623 1.14858 1.23282 0.88608 0.91399 0.97765 1.22938 1.03472 1.01120 0.98295 1.23138 0.89762 0.94617 0.93361 1.68567 1.09793 1.13576 1.34052 1.22495 0.90994 0.90568 1.02767 0.93035 0.96877 0.94650 0.92960 0.92922 0.83838 0.85431 0.76175 0.91130 0.90492 0.90249 0.90424 0.92662 0.90735 0.81055 0.83223 0.81457 0.90150 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 9 C 0.03 0.82 4.86 -27.89 -0.14 0.69 16 10 C -0.09 -1.93 4.78 -26.73 -0.13 -2.06 16 11 C 0.08 1.32 3.15 -68.86 -0.22 1.10 16 12 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 13 N -0.81 -13.80 8.44 -5.65 -0.05 -13.85 16 14 C 0.48 7.64 7.03 -10.99 -0.08 7.56 16 15 O -0.55 -10.28 15.91 5.55 0.09 -10.20 16 16 N -0.73 -9.06 5.08 -53.73 -0.27 -9.34 16 17 C 0.15 1.76 2.62 -67.85 -0.18 1.58 16 18 H 0.10 1.35 7.58 -51.93 -0.39 0.96 16 19 C -0.13 -1.09 5.47 -26.61 -0.15 -1.23 16 20 C -0.11 -0.86 6.09 -26.65 -0.16 -1.02 16 21 C 0.06 0.61 5.18 -3.83 -0.02 0.59 16 22 N -0.47 -5.87 4.71 -175.42 -0.83 -6.70 16 23 C 0.49 6.32 6.25 -322.80 -2.02 4.31 16 24 N -0.49 -6.22 10.47 -13.93 -0.15 -6.37 16 25 C 0.16 1.36 11.30 -17.23 -0.19 1.17 16 26 C -0.24 -1.64 10.16 -39.31 -0.40 -2.04 16 27 C 0.16 1.35 11.30 -17.22 -0.19 1.16 16 28 N -0.54 -6.36 9.71 -13.93 -0.14 -6.49 16 29 C 0.06 0.79 4.89 -3.84 -0.02 0.77 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.04 0.99 7.75 -51.93 -0.40 0.58 16 33 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.35 6.09 8.58 -39.30 -0.34 5.75 16 36 H 0.33 4.96 9.06 -39.29 -0.36 4.60 16 37 H 0.40 4.22 8.60 -40.82 -0.35 3.87 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.55 7.91 -51.93 -0.41 0.14 16 43 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 44 H 0.17 0.89 8.06 -52.48 -0.42 0.47 16 45 H 0.15 0.51 8.06 -52.49 -0.42 0.09 16 46 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 47 H 0.08 1.32 8.10 -51.93 -0.42 0.90 16 48 H 0.05 0.71 8.10 -51.93 -0.42 0.29 16 LS Contribution 395.28 15.07 5.96 5.96 Total: -1.00 -35.66 395.28 -11.67 -47.33 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -7.71 Total: 10.14 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -4.30 Total: -1.04 kcal Atomic # 7 Polarization: -68.33 SS G_CDS: -0.69 Total: -69.02 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.66 -11.67 -47.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424140696.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.748 kcal (2) G-P(sol) polarization free energy of solvation -35.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds