Wall clock time and date at job start Tue Mar 31 2020 18:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27725 * 3 2 1 5 5 H 1.48495 * 109.47159 * 0.27736 * 3 2 1 6 6 H 1.48505 * 109.47290 * 120.27720 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47274 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47096 * 305.00329 * 11 10 9 13 13 N 1.46903 * 109.46687 * 65.00348 * 11 10 9 14 14 C 1.50697 * 109.46971 * 184.99848 * 11 10 9 15 15 O 1.21283 * 120.00040 * 259.99759 * 14 11 10 16 16 N 1.34772 * 120.00246 * 80.00527 * 14 11 10 17 17 C 1.46495 * 120.00453 * 179.97438 * 16 14 11 18 18 H 1.08998 * 109.50032 * 325.07232 * 17 16 14 19 19 C 1.53125 * 109.50373 * 204.99789 * 17 16 14 20 20 C 1.53118 * 109.15872 * 182.39989 * 19 17 16 21 21 C 1.53041 * 109.27891 * 57.65687 * 20 19 17 22 22 N 1.46851 * 109.52047 * 300.81936 * 21 20 19 23 23 C 1.38413 * 110.99598 * 185.84067 * 22 21 20 24 24 N 1.32488 * 119.21719 * 123.68744 * 23 22 21 25 25 C 1.32275 * 120.73895 * 179.71558 * 24 23 22 26 26 C 1.38603 * 119.19918 * 0.54163 * 25 24 23 27 27 C 1.38608 * 118.55382 * 359.72853 * 26 25 24 28 28 N 1.32275 * 119.20053 * 0.02562 * 27 26 25 29 29 C 1.46844 * 111.19744 * 61.74377 * 22 21 20 30 30 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 31 31 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 32 32 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 33 33 H 1.09004 * 109.47330 * 299.99977 * 10 9 7 34 34 H 1.09005 * 109.47124 * 59.99773 * 10 9 7 35 35 H 1.00893 * 111.00236 * 59.99419 * 13 11 10 36 36 H 1.00896 * 110.99552 * 183.95831 * 13 11 10 37 37 H 0.97003 * 119.99563 * 359.97438 * 16 14 11 38 38 H 1.08992 * 109.52074 * 302.30580 * 19 17 16 39 39 H 1.09006 * 109.52060 * 62.43469 * 19 17 16 40 40 H 1.08997 * 109.50166 * 177.59707 * 20 19 17 41 41 H 1.09003 * 109.50809 * 297.71318 * 20 19 17 42 42 H 1.08999 * 109.46126 * 60.83575 * 21 20 19 43 43 H 1.09004 * 109.46481 * 180.80205 * 21 20 19 44 44 H 1.08007 * 120.39865 * 180.24811 * 25 24 23 45 45 H 1.07997 * 120.72330 * 179.75461 * 26 25 24 46 46 H 1.08000 * 120.40070 * 179.97438 * 27 26 25 47 47 H 1.09004 * 109.45757 * 178.24260 * 29 22 21 48 48 H 1.08993 * 109.46705 * 58.27511 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0979 1.6993 -1.2159 5 1 1.2843 2.7464 0.0068 6 1 3.1081 1.6934 1.2091 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2452 -3.6621 -0.0122 11 6 1.4801 -4.9872 -0.0116 12 1 0.7914 -5.0087 0.8330 13 7 0.7233 -5.1161 -1.2640 14 6 2.4552 -6.1301 0.1060 15 8 2.7829 -6.7518 -0.8825 16 7 2.9631 -6.4616 1.3096 17 6 3.9105 -7.5730 1.4240 18 1 3.6468 -8.3512 0.7078 19 6 3.8582 -8.1454 2.8432 20 6 4.8933 -9.2663 2.9715 21 6 6.2807 -8.7137 2.6369 22 7 6.2790 -8.1787 1.2693 23 6 7.5512 -7.7893 0.8876 24 7 8.0850 -8.3088 -0.2081 25 6 9.2963 -7.9539 -0.6037 26 6 10.0117 -7.0360 0.1491 27 6 9.4254 -6.5165 1.2926 28 7 8.2083 -6.9101 1.6296 29 6 5.3263 -7.0694 1.1343 30 1 -0.4849 0.8401 0.0041 31 1 0.6280 -2.5591 0.8866 32 1 0.6206 -2.5548 -0.8933 33 1 2.8685 -3.6025 -0.9044 34 1 2.8753 -3.6063 0.8756 35 1 1.3398 -5.0988 -2.0625 36 1 0.1589 -5.9524 -1.2609 37 1 2.7012 -5.9642 2.1001 38 1 4.0832 -7.3577 3.5622 39 1 2.8625 -8.5437 3.0388 40 1 4.8906 -9.6492 3.9921 41 1 4.6458 -10.0714 2.2796 42 1 6.5334 -7.9181 3.3378 43 1 7.0182 -9.5127 2.7135 44 1 9.7246 -8.3779 -1.5000 45 1 11.0041 -6.7319 -0.1490 46 1 9.9561 -5.7997 1.9016 47 1 5.3706 -6.6743 0.1193 48 1 5.5835 -6.2815 1.8421 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424140696.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:12 Heat of formation + Delta-G solvation = -8.542711 kcal Electronic energy + Delta-G solvation = -28593.778474 eV Core-core repulsion = 24682.391625 eV Total energy + Delta-G solvation = -3911.386850 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.33035 -41.25594 -39.67458 -36.87910 -36.19154 -34.81929 -34.77175 -34.11358 -31.93958 -31.64298 -30.88792 -28.08493 -26.34476 -25.70220 -25.52484 -23.95255 -23.49980 -22.26080 -21.42475 -20.82573 -19.01751 -18.69592 -18.53036 -18.03874 -17.35885 -16.91113 -16.80120 -16.69060 -16.42313 -15.96340 -15.73617 -15.40555 -15.26570 -15.06971 -14.87885 -14.74732 -14.37831 -14.28128 -14.16834 -13.80364 -13.69166 -13.43545 -12.79720 -12.77893 -12.53934 -12.29768 -12.16395 -12.04973 -11.93394 -11.80708 -11.75422 -11.67699 -11.63503 -11.26891 -11.00649 -10.68170 -10.51402 -10.48845 -10.21961 -9.68996 -9.62552 -8.14569 -6.24977 -0.23197 0.09289 1.40257 1.43283 1.46534 1.51358 1.89071 2.33369 2.44013 2.64972 3.17954 3.18178 3.52370 3.55645 3.66073 3.69849 3.71614 3.87487 3.93540 4.08564 4.11172 4.14679 4.15852 4.25837 4.30711 4.40767 4.55440 4.58785 4.69279 4.75968 4.79299 4.81856 4.92622 5.01114 5.10149 5.20223 5.22728 5.26366 5.40312 5.55566 5.67290 5.71666 5.83782 5.97861 6.08714 6.17707 6.29654 6.43582 6.53290 6.93274 7.05001 7.13524 7.42918 8.96434 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010613 B = 0.002801 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.725385 B = 9993.009301 C =11489.943209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.003 3.997 3 Si 0.959 3.041 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.053 0.947 9 C 0.041 3.959 10 C -0.081 4.081 11 C 0.087 3.913 12 H 0.115 0.885 13 N -0.818 5.818 14 C 0.489 3.511 15 O -0.580 6.580 16 N -0.710 5.710 17 C 0.154 3.846 18 H 0.075 0.925 19 C -0.121 4.121 20 C -0.104 4.104 21 C 0.065 3.935 22 N -0.484 5.484 23 C 0.463 3.537 24 N -0.531 5.531 25 C 0.142 3.858 26 C -0.216 4.216 27 C 0.143 3.857 28 N -0.562 5.562 29 C 0.074 3.926 30 H 0.263 0.737 31 H -0.003 1.003 32 H 0.005 0.995 33 H 0.037 0.963 34 H 0.066 0.934 35 H 0.344 0.656 36 H 0.347 0.653 37 H 0.417 0.583 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.072 0.928 42 H 0.053 0.947 43 H 0.075 0.925 44 H 0.202 0.798 45 H 0.192 0.808 46 H 0.199 0.801 47 H 0.038 0.962 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.814 -20.135 8.393 28.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.783 3.217 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.585 4.585 8 H 0.071 0.929 9 C 0.004 3.996 10 C -0.119 4.119 11 C -0.029 4.029 12 H 0.133 0.867 13 N -0.347 5.347 14 C 0.275 3.725 15 O -0.459 6.459 16 N -0.362 5.362 17 C 0.048 3.952 18 H 0.094 0.906 19 C -0.159 4.159 20 C -0.143 4.143 21 C -0.061 4.061 22 N -0.210 5.210 23 C 0.107 3.893 24 N -0.247 5.247 25 C -0.024 4.024 26 C -0.237 4.237 27 C -0.023 4.023 28 N -0.281 5.281 29 C -0.055 4.055 30 H 0.071 0.929 31 H 0.015 0.985 32 H 0.024 0.976 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.157 0.843 36 H 0.161 0.839 37 H 0.254 0.746 38 H 0.101 0.899 39 H 0.112 0.888 40 H 0.127 0.873 41 H 0.091 0.909 42 H 0.071 0.929 43 H 0.094 0.906 44 H 0.219 0.781 45 H 0.209 0.791 46 H 0.216 0.784 47 H 0.057 0.943 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 17.450 -20.448 7.862 28.008 hybrid contribution 1.740 1.252 -0.047 2.144 sum 19.190 -19.196 7.815 28.246 Atomic orbital electron populations 1.70096 1.07585 1.27615 1.51554 1.25891 0.95715 1.02972 0.94927 0.85605 0.78378 0.78667 0.79005 1.19746 1.20759 1.19040 1.21699 0.93257 0.92859 1.50649 0.92869 1.18807 0.93808 0.91150 0.95851 1.21378 0.97726 0.92346 1.00469 1.21651 0.93681 0.91821 0.95772 0.86707 1.58980 1.27151 1.45321 1.03259 1.22457 0.81778 0.85180 0.83117 1.90663 1.62229 1.55027 1.37987 1.46058 1.45121 1.34992 1.10065 1.20861 0.85978 0.88507 0.99864 0.90636 1.21885 1.01580 0.99242 0.93169 1.21555 0.91367 0.97601 1.03739 1.22220 0.99806 0.99039 0.85053 1.59026 1.01455 1.32805 1.27673 1.21134 0.91561 0.88600 0.88014 1.68076 1.14201 1.27062 1.15317 1.23929 0.87732 0.91826 0.98921 1.23359 1.04590 0.99022 0.96702 1.23814 0.89064 0.95004 0.94425 1.68542 1.11301 1.13822 1.34440 1.22234 0.92246 0.91011 0.99971 0.92866 0.98493 0.97612 0.94443 0.91583 0.84302 0.83941 0.74625 0.89864 0.88822 0.87309 0.90942 0.92890 0.90638 0.78115 0.79075 0.78419 0.94337 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 2 C 0.00 0.17 5.46 84.66 0.46 0.63 16 3 Si 0.96 44.69 29.54 68.60 2.03 46.71 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.55 -31.40 9.11 25.60 0.23 -31.17 16 8 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 9 C 0.04 2.15 4.86 29.85 0.15 2.30 16 10 C -0.08 -3.32 4.78 30.59 0.15 -3.18 16 11 C 0.09 2.91 3.15 44.17 0.14 3.05 16 12 H 0.12 3.48 8.14 -2.39 -0.02 3.46 16 13 N -0.82 -28.44 8.44 -171.79 -1.45 -29.89 16 14 C 0.49 15.52 7.03 87.66 0.62 16.14 16 15 O -0.58 -22.32 15.91 -3.04 -0.05 -22.36 16 16 N -0.71 -17.30 5.08 -442.30 -2.25 -19.54 16 17 C 0.15 3.58 2.62 45.05 0.12 3.70 16 18 H 0.08 2.14 7.58 -2.39 -0.02 2.13 16 19 C -0.12 -1.79 5.47 30.68 0.17 -1.62 16 20 C -0.10 -1.43 6.09 30.65 0.19 -1.24 16 21 C 0.07 1.22 5.18 86.33 0.45 1.67 16 22 N -0.48 -12.39 4.71 -708.92 -3.34 -15.73 16 23 C 0.46 12.24 6.25 261.49 1.63 13.87 16 24 N -0.53 -13.67 10.47 -197.98 -2.07 -15.75 16 25 C 0.14 2.31 11.30 84.71 0.96 3.26 16 26 C -0.22 -2.48 10.16 22.45 0.23 -2.25 16 27 C 0.14 2.21 11.30 84.71 0.96 3.17 16 28 N -0.56 -13.10 9.71 -197.98 -1.92 -15.02 16 29 C 0.07 2.03 4.89 86.33 0.42 2.45 16 30 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 31 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 32 H 0.01 0.32 7.75 -2.39 -0.02 0.30 16 33 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 35 H 0.34 12.42 8.58 -89.70 -0.77 11.65 16 36 H 0.35 10.34 9.06 -89.70 -0.81 9.52 16 37 H 0.42 8.03 8.60 -92.71 -0.80 7.23 16 38 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.05 1.01 7.91 -2.39 -0.02 0.99 16 43 H 0.08 1.38 8.10 -2.38 -0.02 1.36 16 44 H 0.20 1.74 8.06 -2.91 -0.02 1.72 16 45 H 0.19 0.51 8.06 -2.91 -0.02 0.49 16 46 H 0.20 1.60 8.06 -2.91 -0.02 1.57 16 47 H 0.04 1.35 8.10 -2.38 -0.02 1.33 16 48 H 0.05 1.34 8.10 -2.39 -0.02 1.32 16 Total: -1.00 -80.52 395.28 -3.30 -83.82 By element: Atomic # 1 Polarization: 34.95 SS G_CDS: -1.39 Total: 33.56 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 6.86 Total: 10.78 kcal Atomic # 7 Polarization: -141.76 SS G_CDS: -10.75 Total: -152.51 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.05 Total: -22.36 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -80.52 -3.30 -83.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424140696.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.280 kcal (2) G-P(sol) polarization free energy of solvation -80.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds