Wall clock time and date at job start Tue Mar 31 2020 18:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.47200 * 239.72287 * 3 2 1 5 5 H 1.48498 * 109.46671 * 359.72211 * 3 2 1 6 6 H 1.48499 * 109.47156 * 119.72301 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47355 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47199 * 305.00346 * 11 10 9 13 13 N 1.46898 * 109.46690 * 65.00106 * 11 10 9 14 14 C 1.50696 * 109.47146 * 184.99852 * 11 10 9 15 15 O 1.21279 * 120.00286 * 260.00076 * 14 11 10 16 16 N 1.34781 * 119.99816 * 80.00269 * 14 11 10 17 17 C 1.46501 * 120.00182 * 179.97438 * 16 14 11 18 18 H 1.09001 * 109.50068 * 35.08116 * 17 16 14 19 19 C 1.53113 * 109.50595 * 155.19582 * 17 16 14 20 20 C 1.53120 * 109.16429 * 177.59784 * 19 17 16 21 21 C 1.53044 * 109.27547 * 302.34593 * 20 19 17 22 22 N 1.46851 * 109.51889 * 59.17865 * 21 20 19 23 23 C 1.38406 * 110.99590 * 174.15867 * 22 21 20 24 24 N 1.32492 * 119.21826 * 123.94079 * 23 22 21 25 25 C 1.32279 * 120.74486 * 179.72270 * 24 23 22 26 26 C 1.38611 * 119.19136 * 0.53606 * 25 24 23 27 27 C 1.38602 * 118.55718 * 359.74067 * 26 25 24 28 28 N 1.32272 * 119.19895 * 359.97438 * 27 26 25 29 29 C 1.46848 * 111.20136 * 298.25288 * 22 21 20 30 30 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 31 31 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 32 32 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 33 33 H 1.09000 * 109.47339 * 299.99895 * 10 9 7 34 34 H 1.09002 * 109.46926 * 60.00175 * 10 9 7 35 35 H 1.00900 * 111.00688 * 296.04355 * 13 11 10 36 36 H 1.00898 * 111.00196 * 60.00491 * 13 11 10 37 37 H 0.97002 * 119.99995 * 359.97438 * 16 14 11 38 38 H 1.08999 * 109.52571 * 297.50639 * 19 17 16 39 39 H 1.09007 * 109.52113 * 57.69118 * 19 17 16 40 40 H 1.08994 * 109.50393 * 182.40823 * 20 19 17 41 41 H 1.08993 * 109.50191 * 62.28369 * 20 19 17 42 42 H 1.08993 * 109.46130 * 299.16441 * 21 20 19 43 43 H 1.08996 * 109.45124 * 179.18896 * 21 20 19 44 44 H 1.07997 * 120.40636 * 180.25594 * 25 24 23 45 45 H 1.08003 * 120.71778 * 179.70732 * 26 25 24 46 46 H 1.08002 * 120.39847 * 180.02562 * 27 26 25 47 47 H 1.09005 * 109.46238 * 301.73482 * 29 22 21 48 48 H 1.08995 * 109.45281 * 181.75395 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1081 1.6935 -1.2091 5 1 1.2842 2.7464 -0.0068 6 1 3.0979 1.6993 1.2159 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 6 2.2453 -3.6621 0.0166 11 6 1.4803 -4.9871 0.0231 12 1 0.7884 -5.0031 0.8651 13 7 0.7282 -5.1243 -1.2313 14 6 2.4549 -6.1292 0.1519 15 8 2.7864 -6.7574 -0.8312 16 7 2.9582 -6.4527 1.3596 17 6 3.9052 -7.5633 1.4850 18 1 4.5410 -7.6010 0.6004 19 6 4.7722 -7.3578 2.7302 20 6 5.7177 -8.5520 2.8871 21 6 4.8948 -9.8392 2.9786 22 7 4.0836 -9.9904 1.7639 23 6 3.4261 -11.2083 1.7551 24 7 2.1073 -11.2303 1.6297 25 6 1.4488 -12.3774 1.6121 26 6 2.1542 -13.5639 1.7380 27 6 3.5324 -13.5042 1.8731 28 7 4.1298 -12.3241 1.8772 29 6 3.1350 -8.8791 1.6171 30 1 -0.4850 0.8401 -0.0041 31 1 0.6241 -2.5528 0.9015 32 1 0.6247 -2.5609 -0.8785 33 1 2.8719 -3.6083 -0.8736 34 1 2.8719 -3.6004 0.9064 35 1 0.0233 -4.4067 -1.3108 36 1 1.3477 -5.1123 -2.0276 37 1 2.6933 -5.9500 2.1459 38 1 5.3554 -6.4434 2.6212 39 1 4.1335 -7.2808 3.6102 40 1 6.3078 -8.4320 3.7956 41 1 6.3824 -8.6056 2.0250 42 1 4.2403 -9.7907 3.8488 43 1 5.5657 -10.6927 3.0759 44 1 0.3741 -12.3892 1.5055 45 1 1.6411 -14.5142 1.7316 46 1 4.1115 -14.4104 1.9729 47 1 2.4886 -8.8351 2.4937 48 1 2.5278 -9.0356 0.7256 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424140700.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:19 Heat of formation + Delta-G solvation = 17.517471 kcal Electronic energy + Delta-G solvation = -28371.902327 eV Core-core repulsion = 24461.645531 eV Total energy + Delta-G solvation = -3910.256795 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.57150 -39.98318 -38.65856 -35.62592 -35.02364 -34.09102 -33.23888 -32.83456 -30.81746 -29.98505 -29.81244 -26.48235 -25.56587 -25.02606 -24.01113 -22.92922 -22.46829 -20.63187 -20.43562 -19.59651 -18.28033 -17.73879 -17.27238 -16.34215 -16.19323 -15.85734 -15.56020 -15.26576 -15.06994 -14.63381 -14.52503 -14.46494 -14.18939 -13.95254 -13.88700 -13.74132 -13.32067 -13.11428 -12.90953 -12.74348 -12.16608 -11.92282 -11.63864 -11.34386 -11.33090 -11.19035 -11.07498 -11.04050 -10.90098 -10.82761 -10.70384 -10.43878 -9.97659 -9.88692 -9.47689 -9.28416 -9.19530 -9.02398 -8.68679 -8.43401 -8.15437 -6.08132 -4.11242 0.63645 0.80997 2.69887 2.98719 3.28582 3.31348 3.33475 3.36019 3.47837 3.85113 4.28451 4.37877 4.39627 4.48102 4.53708 4.62230 4.79698 4.81447 4.90683 5.02299 5.09601 5.20905 5.23356 5.28033 5.32098 5.36700 5.39309 5.56806 5.60965 5.65806 5.76021 5.78505 5.83007 5.97798 6.07256 6.30200 6.32320 6.45292 6.53133 6.60986 6.88753 6.94452 7.45852 7.52663 7.62440 7.73268 7.84882 7.88902 7.93557 8.31643 8.50458 8.94541 9.53470 11.02683 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.022352 B = 0.002156 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.370205 B =12981.134987 C =13839.420419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.054 0.946 9 C 0.025 3.975 10 C -0.137 4.137 11 C 0.075 3.925 12 H 0.096 0.904 13 N -0.831 5.831 14 C 0.527 3.473 15 O -0.533 6.533 16 N -0.729 5.729 17 C 0.148 3.852 18 H 0.096 0.904 19 C -0.133 4.133 20 C -0.113 4.113 21 C 0.065 3.935 22 N -0.456 5.456 23 C 0.497 3.503 24 N -0.548 5.548 25 C 0.175 3.825 26 C -0.266 4.266 27 C 0.173 3.827 28 N -0.533 5.533 29 C 0.063 3.937 30 H 0.262 0.738 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.354 0.646 36 H 0.345 0.655 37 H 0.402 0.598 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.045 0.955 43 H 0.096 0.904 44 H 0.168 0.832 45 H 0.146 0.854 46 H 0.169 0.831 47 H 0.054 0.946 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.668 -26.083 9.246 28.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.177 4.177 11 C -0.040 4.040 12 H 0.114 0.886 13 N -0.363 5.363 14 C 0.314 3.686 15 O -0.408 6.408 16 N -0.382 5.382 17 C 0.042 3.958 18 H 0.114 0.886 19 C -0.171 4.171 20 C -0.152 4.152 21 C -0.061 4.061 22 N -0.175 5.175 23 C 0.141 3.859 24 N -0.268 5.268 25 C 0.008 3.992 26 C -0.290 4.290 27 C 0.005 3.995 28 N -0.251 5.251 29 C -0.066 4.066 30 H 0.072 0.928 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.169 0.831 36 H 0.159 0.841 37 H 0.237 0.763 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.063 0.937 43 H 0.114 0.886 44 H 0.185 0.815 45 H 0.164 0.836 46 H 0.186 0.814 47 H 0.072 0.928 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.353 -26.136 8.417 28.426 hybrid contribution -0.311 1.226 0.618 1.408 sum 7.042 -24.910 9.036 27.418 Atomic orbital electron populations 1.69941 1.06006 1.26877 1.50370 1.25021 0.94881 0.99299 0.95153 0.86639 0.79583 0.83025 0.78653 1.20227 1.21235 1.20232 1.21146 0.92979 0.90914 1.51188 0.92773 1.19096 0.93721 0.91101 0.97340 1.22379 0.99857 0.93964 1.01490 1.21470 0.94650 0.92269 0.95617 0.88605 1.58733 1.18465 1.55838 1.03241 1.20928 0.80927 0.84332 0.82431 1.90649 1.59677 1.53170 1.37330 1.45970 1.47481 1.34406 1.10364 1.20844 0.90241 0.84992 0.99707 0.88557 1.21941 0.98356 0.99433 0.97373 1.21577 0.97743 0.92385 1.03474 1.22258 0.96022 1.00298 0.87510 1.58223 1.23008 0.99189 1.37076 1.21027 0.85061 0.90275 0.89538 1.68445 1.08709 1.31051 1.18583 1.23123 1.00832 0.86969 0.88290 1.22736 0.96883 1.01107 1.08241 1.23087 0.92315 0.95185 0.88932 1.68009 1.40588 0.98197 1.18325 1.22458 0.92764 0.87757 1.03585 0.92835 0.96349 0.96414 0.92683 0.92529 0.83086 0.84143 0.76341 0.90178 0.91251 0.89982 0.90181 0.93698 0.88607 0.81456 0.83587 0.81364 0.92805 0.88590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.28 29.54 -169.99 -5.02 16.25 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.59 4.74 -27.89 -0.13 0.46 16 10 C -0.14 -2.68 4.78 -26.73 -0.13 -2.81 16 11 C 0.08 1.28 3.21 -68.87 -0.22 1.06 16 12 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 13 N -0.83 -14.57 8.93 -5.66 -0.05 -14.62 16 14 C 0.53 8.76 7.04 -10.99 -0.08 8.68 16 15 O -0.53 -10.59 15.92 5.56 0.09 -10.51 16 16 N -0.73 -9.37 5.08 -53.73 -0.27 -9.65 16 17 C 0.15 1.76 2.62 -67.85 -0.18 1.58 16 18 H 0.10 1.38 7.58 -51.93 -0.39 0.99 16 19 C -0.13 -1.15 5.47 -26.61 -0.15 -1.30 16 20 C -0.11 -0.88 6.09 -26.65 -0.16 -1.04 16 21 C 0.06 0.60 5.33 -3.83 -0.02 0.57 16 22 N -0.46 -5.46 4.72 -175.43 -0.83 -6.29 16 23 C 0.50 6.17 7.17 -322.81 -2.32 3.85 16 24 N -0.55 -6.66 8.68 -13.93 -0.12 -6.78 16 25 C 0.18 1.52 11.30 -17.22 -0.19 1.32 16 26 C -0.27 -1.77 10.16 -39.31 -0.40 -2.17 16 27 C 0.17 1.33 11.30 -17.23 -0.19 1.14 16 28 N -0.53 -5.92 9.65 -13.93 -0.13 -6.06 16 29 C 0.06 0.79 4.20 -3.83 -0.02 0.77 16 30 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 33 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.35 6.20 7.55 -39.29 -0.30 5.90 16 36 H 0.35 6.17 8.58 -39.29 -0.34 5.83 16 37 H 0.40 4.29 8.60 -40.82 -0.35 3.94 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.10 0.86 7.55 -51.93 -0.39 0.47 16 44 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 45 H 0.15 0.49 8.06 -52.48 -0.42 0.06 16 46 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 47 H 0.05 0.66 8.10 -51.93 -0.42 0.24 16 48 H 0.10 1.52 7.69 -51.93 -0.40 1.12 16 LS Contribution 391.13 15.07 5.89 5.89 Total: -1.00 -34.19 391.13 -11.87 -46.06 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -7.56 Total: 11.97 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -4.60 Total: -1.00 kcal Atomic # 7 Polarization: -68.00 SS G_CDS: -0.67 Total: -68.67 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.19 -11.87 -46.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424140700.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.577 kcal (2) G-P(sol) polarization free energy of solvation -34.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds