Wall clock time and date at job start Tue Mar 31 2020 18:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.47200 * 239.72287 * 3 2 1 5 5 H 1.48498 * 109.46671 * 359.72211 * 3 2 1 6 6 H 1.48499 * 109.47156 * 119.72301 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47355 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47199 * 305.00346 * 11 10 9 13 13 N 1.46898 * 109.46690 * 65.00106 * 11 10 9 14 14 C 1.50696 * 109.47146 * 184.99852 * 11 10 9 15 15 O 1.21279 * 120.00286 * 260.00076 * 14 11 10 16 16 N 1.34781 * 119.99816 * 80.00269 * 14 11 10 17 17 C 1.46501 * 120.00182 * 179.97438 * 16 14 11 18 18 H 1.09001 * 109.50068 * 35.08116 * 17 16 14 19 19 C 1.53113 * 109.50595 * 155.19582 * 17 16 14 20 20 C 1.53120 * 109.16429 * 177.59784 * 19 17 16 21 21 C 1.53044 * 109.27547 * 302.34593 * 20 19 17 22 22 N 1.46851 * 109.51889 * 59.17865 * 21 20 19 23 23 C 1.38406 * 110.99590 * 174.15867 * 22 21 20 24 24 N 1.32492 * 119.21826 * 123.94079 * 23 22 21 25 25 C 1.32279 * 120.74486 * 179.72270 * 24 23 22 26 26 C 1.38611 * 119.19136 * 0.53606 * 25 24 23 27 27 C 1.38602 * 118.55718 * 359.74067 * 26 25 24 28 28 N 1.32272 * 119.19895 * 359.97438 * 27 26 25 29 29 C 1.46848 * 111.20136 * 298.25288 * 22 21 20 30 30 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 31 31 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 32 32 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 33 33 H 1.09000 * 109.47339 * 299.99895 * 10 9 7 34 34 H 1.09002 * 109.46926 * 60.00175 * 10 9 7 35 35 H 1.00900 * 111.00688 * 296.04355 * 13 11 10 36 36 H 1.00898 * 111.00196 * 60.00491 * 13 11 10 37 37 H 0.97002 * 119.99995 * 359.97438 * 16 14 11 38 38 H 1.08999 * 109.52571 * 297.50639 * 19 17 16 39 39 H 1.09007 * 109.52113 * 57.69118 * 19 17 16 40 40 H 1.08994 * 109.50393 * 182.40823 * 20 19 17 41 41 H 1.08993 * 109.50191 * 62.28369 * 20 19 17 42 42 H 1.08993 * 109.46130 * 299.16441 * 21 20 19 43 43 H 1.08996 * 109.45124 * 179.18896 * 21 20 19 44 44 H 1.07997 * 120.40636 * 180.25594 * 25 24 23 45 45 H 1.08003 * 120.71778 * 179.70732 * 26 25 24 46 46 H 1.08002 * 120.39847 * 180.02562 * 27 26 25 47 47 H 1.09005 * 109.46238 * 301.73482 * 29 22 21 48 48 H 1.08995 * 109.45281 * 181.75395 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1081 1.6935 -1.2091 5 1 1.2842 2.7464 -0.0068 6 1 3.0979 1.6993 1.2159 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 6 2.2453 -3.6621 0.0166 11 6 1.4803 -4.9871 0.0231 12 1 0.7884 -5.0031 0.8651 13 7 0.7282 -5.1243 -1.2313 14 6 2.4549 -6.1292 0.1519 15 8 2.7864 -6.7574 -0.8312 16 7 2.9582 -6.4527 1.3596 17 6 3.9052 -7.5633 1.4850 18 1 4.5410 -7.6010 0.6004 19 6 4.7722 -7.3578 2.7302 20 6 5.7177 -8.5520 2.8871 21 6 4.8948 -9.8392 2.9786 22 7 4.0836 -9.9904 1.7639 23 6 3.4261 -11.2083 1.7551 24 7 2.1073 -11.2303 1.6297 25 6 1.4488 -12.3774 1.6121 26 6 2.1542 -13.5639 1.7380 27 6 3.5324 -13.5042 1.8731 28 7 4.1298 -12.3241 1.8772 29 6 3.1350 -8.8791 1.6171 30 1 -0.4850 0.8401 -0.0041 31 1 0.6241 -2.5528 0.9015 32 1 0.6247 -2.5609 -0.8785 33 1 2.8719 -3.6083 -0.8736 34 1 2.8719 -3.6004 0.9064 35 1 0.0233 -4.4067 -1.3108 36 1 1.3477 -5.1123 -2.0276 37 1 2.6933 -5.9500 2.1459 38 1 5.3554 -6.4434 2.6212 39 1 4.1335 -7.2808 3.6102 40 1 6.3078 -8.4320 3.7956 41 1 6.3824 -8.6056 2.0250 42 1 4.2403 -9.7907 3.8488 43 1 5.5657 -10.6927 3.0759 44 1 0.3741 -12.3892 1.5055 45 1 1.6411 -14.5142 1.7316 46 1 4.1115 -14.4104 1.9729 47 1 2.4886 -8.8351 2.4937 48 1 2.5278 -9.0356 0.7256 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424140700.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:18 Heat of formation + Delta-G solvation = -6.991566 kcal Electronic energy + Delta-G solvation = -28372.965118 eV Core-core repulsion = 24461.645531 eV Total energy + Delta-G solvation = -3911.319587 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.30897 -41.14708 -39.64024 -37.11774 -36.15110 -34.82870 -34.80408 -34.07626 -31.67980 -31.51973 -30.91480 -28.09384 -26.33832 -26.03017 -25.38920 -23.75550 -23.43358 -22.25048 -21.44850 -20.79452 -19.06049 -18.84987 -18.46890 -18.07078 -17.21038 -16.70437 -16.53440 -16.33402 -16.16505 -15.92477 -15.89486 -15.52732 -15.43260 -15.06292 -14.79497 -14.59490 -14.47505 -14.35335 -14.15505 -13.96675 -13.59656 -13.44709 -12.95418 -12.79080 -12.60993 -12.53593 -12.06441 -12.01709 -11.93619 -11.81392 -11.77821 -11.69726 -11.65955 -11.30860 -11.15553 -10.73067 -10.54883 -10.22982 -10.15354 -9.63722 -9.44769 -8.20516 -6.30819 -0.03182 0.17246 1.40446 1.42080 1.49982 1.58593 1.86565 2.32291 2.40841 2.76975 3.12953 3.19153 3.58262 3.64363 3.73053 3.77978 3.80158 3.85419 3.92987 4.09271 4.15554 4.16230 4.25903 4.27214 4.35643 4.45422 4.56286 4.63071 4.67864 4.69449 4.84177 4.85760 4.89340 5.02262 5.10075 5.13947 5.26061 5.28614 5.43640 5.47598 5.63381 5.66951 5.72581 5.81598 6.07519 6.22142 6.24511 6.47239 6.53729 6.84542 7.13060 7.24082 7.38048 8.89969 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.022352 B = 0.002156 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.370205 B =12981.134987 C =13839.420419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.004 3.996 3 Si 0.959 3.041 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.055 0.945 9 C 0.030 3.970 10 C -0.120 4.120 11 C 0.082 3.918 12 H 0.110 0.890 13 N -0.832 5.832 14 C 0.528 3.472 15 O -0.570 6.570 16 N -0.712 5.712 17 C 0.150 3.850 18 H 0.070 0.930 19 C -0.125 4.125 20 C -0.107 4.107 21 C 0.067 3.933 22 N -0.470 5.470 23 C 0.471 3.529 24 N -0.582 5.582 25 C 0.155 3.845 26 C -0.247 4.247 27 C 0.163 3.837 28 N -0.553 5.553 29 C 0.080 3.920 30 H 0.264 0.736 31 H 0.003 0.997 32 H 0.001 0.999 33 H 0.043 0.957 34 H 0.069 0.931 35 H 0.353 0.647 36 H 0.343 0.657 37 H 0.416 0.584 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.111 0.889 41 H 0.071 0.929 42 H 0.048 0.952 43 H 0.096 0.904 44 H 0.191 0.809 45 H 0.186 0.814 46 H 0.205 0.795 47 H 0.055 0.945 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.747 -27.163 10.959 30.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.195 4.195 3 Si 0.784 3.216 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.074 0.926 9 C -0.007 4.007 10 C -0.160 4.160 11 C -0.033 4.033 12 H 0.128 0.872 13 N -0.363 5.363 14 C 0.315 3.685 15 O -0.448 6.448 16 N -0.365 5.365 17 C 0.044 3.956 18 H 0.088 0.912 19 C -0.163 4.163 20 C -0.145 4.145 21 C -0.059 4.059 22 N -0.190 5.190 23 C 0.115 3.885 24 N -0.303 5.303 25 C -0.011 4.011 26 C -0.269 4.269 27 C -0.004 4.004 28 N -0.272 5.272 29 C -0.049 4.049 30 H 0.072 0.928 31 H 0.021 0.979 32 H 0.019 0.981 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.168 0.832 36 H 0.156 0.844 37 H 0.253 0.747 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.129 0.871 41 H 0.090 0.910 42 H 0.067 0.933 43 H 0.115 0.885 44 H 0.208 0.792 45 H 0.203 0.797 46 H 0.222 0.778 47 H 0.073 0.927 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.437 -27.245 10.176 30.282 hybrid contribution -0.705 1.400 0.083 1.570 sum 7.732 -25.845 10.259 28.861 Atomic orbital electron populations 1.70059 1.07486 1.27796 1.51309 1.25885 0.95753 1.03012 0.94802 0.85588 0.78350 0.78596 0.79040 1.19703 1.20903 1.19109 1.21596 0.93373 0.92420 1.50869 0.92631 1.18963 0.94032 0.92004 0.95695 1.22127 0.98767 0.93549 1.01523 1.21413 0.94720 0.91299 0.95908 0.87208 1.58747 1.18453 1.55647 1.03445 1.20783 0.80694 0.83970 0.83035 1.90639 1.60908 1.54429 1.38806 1.45840 1.46629 1.34320 1.09678 1.20902 0.89863 0.84321 1.00484 0.91194 1.21926 0.98185 1.00226 0.95933 1.21589 0.97291 0.91083 1.04536 1.22328 0.95809 1.01060 0.86656 1.58299 1.23060 0.99022 1.38610 1.21172 0.85503 0.90745 0.91070 1.68410 1.09011 1.33064 1.19796 1.23690 1.02128 0.86994 0.88257 1.23140 0.96506 1.01919 1.05382 1.23819 0.93408 0.95250 0.87912 1.68028 1.41184 0.98875 1.19102 1.22123 0.92664 0.88456 1.01643 0.92762 0.97884 0.98092 0.93830 0.91208 0.83234 0.84405 0.74713 0.89389 0.89525 0.87074 0.90994 0.93336 0.88546 0.79183 0.79677 0.77800 0.92707 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.42 13.29 21.45 0.28 -54.13 16 2 C 0.00 0.22 5.46 84.66 0.46 0.68 16 3 Si 0.96 43.35 29.54 68.60 2.03 45.37 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.54 -29.85 9.11 25.60 0.23 -29.62 16 8 H 0.06 2.96 7.74 -2.91 -0.02 2.94 16 9 C 0.03 1.48 4.74 29.85 0.14 1.62 16 10 C -0.12 -4.67 4.78 30.59 0.15 -4.52 16 11 C 0.08 2.79 3.21 44.17 0.14 2.94 16 12 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 13 N -0.83 -29.74 8.93 -171.81 -1.54 -31.27 16 14 C 0.53 17.72 7.04 87.66 0.62 18.33 16 15 O -0.57 -23.34 15.92 -3.03 -0.05 -23.39 16 16 N -0.71 -18.01 5.08 -442.29 -2.25 -20.26 16 17 C 0.15 3.57 2.62 45.04 0.12 3.69 16 18 H 0.07 2.08 7.58 -2.39 -0.02 2.06 16 19 C -0.12 -1.95 5.47 30.67 0.17 -1.78 16 20 C -0.11 -1.47 6.09 30.65 0.19 -1.28 16 21 C 0.07 1.17 5.33 86.33 0.46 1.63 16 22 N -0.47 -11.52 4.72 -708.92 -3.34 -14.86 16 23 C 0.47 11.89 7.17 261.49 1.88 13.76 16 24 N -0.58 -14.42 8.68 -197.98 -1.72 -16.13 16 25 C 0.15 2.55 11.30 84.71 0.96 3.50 16 26 C -0.25 -2.69 10.16 22.45 0.23 -2.47 16 27 C 0.16 2.20 11.30 84.71 0.96 3.15 16 28 N -0.55 -12.00 9.65 -197.99 -1.91 -13.91 16 29 C 0.08 2.08 4.20 86.33 0.36 2.44 16 30 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 31 H 0.00 0.14 8.14 -2.39 -0.02 0.13 16 32 H 0.00 0.04 6.87 -2.39 -0.02 0.02 16 33 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.35 12.67 7.55 -89.69 -0.68 11.99 16 36 H 0.34 12.59 8.58 -89.70 -0.77 11.82 16 37 H 0.42 8.25 8.60 -92.71 -0.80 7.46 16 38 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.10 1.67 7.55 -2.39 -0.02 1.66 16 44 H 0.19 1.94 8.06 -2.91 -0.02 1.91 16 45 H 0.19 0.48 8.06 -2.91 -0.02 0.46 16 46 H 0.21 1.04 8.06 -2.91 -0.02 1.02 16 47 H 0.05 1.36 8.10 -2.38 -0.02 1.34 16 48 H 0.06 1.92 7.69 -2.39 -0.02 1.90 16 Total: -1.00 -76.29 391.13 -2.69 -78.98 By element: Atomic # 1 Polarization: 38.77 SS G_CDS: -1.25 Total: 37.52 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 7.06 Total: 12.09 kcal Atomic # 7 Polarization: -140.10 SS G_CDS: -10.47 Total: -150.57 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.05 Total: -23.39 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -76.29 -2.69 -78.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424140700.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.986 kcal (2) G-P(sol) polarization free energy of solvation -76.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds