Wall clock time and date at job start Tue Mar 31 2020 18:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99742 * 2 1 4 4 H 1.48504 * 109.47141 * 239.99528 * 3 2 1 5 5 H 1.48496 * 109.47568 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46931 * 119.99935 * 3 2 1 7 7 C 1.37872 * 119.99592 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99324 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00381 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47177 * 180.02562 * 9 7 2 11 11 C 1.34773 * 119.99971 * 179.97438 * 10 9 7 12 12 O 1.21590 * 120.00164 * 5.07484 * 11 10 9 13 13 N 1.34785 * 120.00117 * 185.06956 * 11 10 9 14 14 C 1.46924 * 120.63023 * 174.96052 * 13 11 10 15 15 C 1.53191 * 108.77744 * 233.58752 * 14 13 11 16 16 C 1.53041 * 109.31224 * 305.37100 * 15 14 13 17 17 C 1.50703 * 109.45916 * 181.38505 * 16 15 14 18 18 N 1.30838 * 126.46400 * 300.08748 * 17 16 15 19 19 N 1.28904 * 109.73640 * 180.22841 * 18 17 16 20 20 C 1.29830 * 109.48629 * 359.74598 * 19 18 17 21 21 N 1.34691 * 126.46626 * 119.97145 * 17 16 15 22 22 C 1.46258 * 128.84338 * 0.09529 * 21 17 16 23 23 C 1.53326 * 108.72757 * 162.64747 * 22 21 17 24 24 C 1.53138 * 109.57570 * 50.30050 * 23 22 21 25 25 C 1.50797 * 128.53075 * 180.14369 * 20 19 18 26 26 C 1.53042 * 109.52963 * 61.36662 * 16 15 14 27 27 C 1.46928 * 120.62771 * 354.94323 * 13 11 10 28 28 H 0.97008 * 119.99971 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47235 * 59.99568 * 9 7 2 30 30 H 1.09005 * 109.46702 * 299.99876 * 9 7 2 31 31 H 0.97000 * 120.00176 * 359.97438 * 10 9 7 32 32 H 1.09008 * 109.58424 * 113.79826 * 14 13 11 33 33 H 1.09005 * 109.70381 * 353.44939 * 14 13 11 34 34 H 1.08998 * 109.49835 * 185.41802 * 15 14 13 35 35 H 1.09001 * 109.52119 * 65.33636 * 15 14 13 36 36 H 1.09007 * 109.45987 * 301.35520 * 16 15 14 37 37 H 1.09003 * 109.59987 * 282.42307 * 22 21 17 38 38 H 1.09001 * 109.59478 * 42.87627 * 22 21 17 39 39 H 1.09001 * 109.45188 * 170.32929 * 23 22 21 40 40 H 1.08993 * 109.45420 * 290.26650 * 23 22 21 41 41 H 1.08995 * 109.50574 * 50.51010 * 24 23 22 42 42 H 1.08999 * 109.49852 * 170.61986 * 24 23 22 43 43 H 1.09000 * 109.73147 * 44.40521 * 25 20 19 44 44 H 1.09000 * 109.73310 * 283.72368 * 25 20 19 45 45 H 1.08999 * 109.49315 * 58.58392 * 26 16 15 46 46 H 1.08998 * 109.49536 * 178.67218 * 26 16 15 47 47 H 1.08997 * 109.58283 * 246.19895 * 27 13 11 48 48 H 1.08996 * 109.58612 * 6.48318 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0018 11 6 1.7537 -4.8833 0.0025 12 8 0.5622 -5.1069 -0.0910 13 7 2.6252 -5.9062 0.1068 14 6 2.1450 -7.2901 0.2199 15 6 2.7777 -7.9320 1.4586 16 6 4.3001 -7.7996 1.3755 17 6 4.9278 -8.4600 2.5759 18 7 4.7292 -8.1438 3.8299 19 7 5.4312 -8.9133 4.5893 20 6 6.0995 -9.7517 3.8571 21 7 5.7973 -9.4885 2.5605 22 6 6.3446 -10.2099 1.4119 23 6 7.5903 -10.9815 1.8631 24 6 7.2635 -11.7940 3.1194 25 6 7.0474 -10.8376 4.3001 26 6 4.6842 -6.3184 1.3493 27 6 4.0734 -5.6584 0.1092 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5570 -0.8896 30 1 0.6240 -2.5566 0.8904 31 1 3.1566 -3.4354 0.0021 32 1 2.4330 -7.8506 -0.6696 33 1 1.0595 -7.2955 0.3196 34 1 2.5060 -8.9867 1.5008 35 1 2.4171 -7.4272 2.3548 36 1 4.6576 -8.2835 0.4665 37 1 5.6000 -10.9087 1.0304 38 1 6.6172 -9.5003 0.6306 39 1 7.9079 -11.6554 1.0675 40 1 8.3928 -10.2779 2.0844 41 1 6.3568 -12.3751 2.9513 42 1 8.0913 -12.4668 3.3431 43 1 6.6165 -11.3819 5.1404 44 1 7.9995 -10.3970 4.5957 45 1 4.3054 -5.8285 2.2463 46 1 5.7696 -6.2246 1.3139 47 1 4.5186 -6.0858 -0.7892 48 1 4.2604 -4.5849 0.1345 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426424989.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:33 Heat of formation + Delta-G solvation = 39.732312 kcal Electronic energy + Delta-G solvation = -28779.122574 eV Core-core repulsion = 24869.829087 eV Total energy + Delta-G solvation = -3909.293488 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.56400 -39.88451 -37.74647 -37.39863 -34.36081 -34.22178 -32.96837 -32.22343 -31.07360 -30.99704 -29.14802 -27.19400 -25.53133 -24.88148 -23.42715 -23.15609 -22.69382 -21.84452 -20.30525 -19.98497 -19.03528 -18.09425 -17.29581 -16.82089 -16.00228 -15.74494 -15.35892 -15.09543 -14.95583 -14.83796 -14.73133 -14.62082 -14.38517 -14.21026 -13.90533 -13.43598 -13.10586 -13.01265 -12.75728 -12.39408 -12.12168 -11.88113 -11.86535 -11.77439 -11.72266 -11.46537 -11.43879 -11.31535 -10.96010 -10.91605 -10.84110 -10.80466 -10.41450 -10.36658 -10.24403 -9.35852 -9.32006 -9.14961 -8.68651 -8.40967 -7.68924 -6.10854 -4.17352 1.56749 2.13779 2.69628 3.18607 3.29023 3.33916 3.35907 3.69812 3.83955 3.92953 3.98260 4.03680 4.14742 4.34457 4.40029 4.53475 4.62140 4.66496 4.67800 4.75332 4.91377 5.01030 5.04539 5.05350 5.16893 5.20398 5.22537 5.25025 5.30015 5.40024 5.47766 5.51913 5.62616 5.66881 5.71051 5.76611 5.92232 6.02799 6.05865 6.28189 6.61182 6.79066 7.16198 7.55388 7.57919 7.62672 7.89651 8.06624 8.58999 8.79790 8.94217 9.35911 9.51798 10.99322 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.021400 B = 0.002255 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.089522 B =12411.793584 C =12910.812845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.541 4.541 8 H 0.061 0.939 9 C 0.266 3.734 10 N -0.729 5.729 11 C 0.698 3.302 12 O -0.598 6.598 13 N -0.639 5.639 14 C 0.135 3.865 15 C -0.123 4.123 16 C 0.006 3.994 17 C 0.190 3.810 18 N -0.288 5.288 19 N -0.291 5.291 20 C 0.168 3.832 21 N -0.471 5.471 22 C 0.101 3.899 23 C -0.135 4.135 24 C -0.126 4.126 25 C -0.033 4.033 26 C -0.123 4.123 27 C 0.116 3.884 28 H 0.266 0.734 29 H 0.025 0.975 30 H 0.024 0.976 31 H 0.385 0.615 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.085 0.915 46 H 0.072 0.928 47 H 0.065 0.935 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.452 -26.811 1.411 33.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.580 4.580 8 H 0.079 0.921 9 C 0.145 3.855 10 N -0.383 5.383 11 C 0.400 3.600 12 O -0.476 6.476 13 N -0.379 5.379 14 C 0.011 3.989 15 C -0.162 4.162 16 C -0.015 4.015 17 C -0.078 4.078 18 N -0.127 5.127 19 N -0.130 5.130 20 C -0.099 4.099 21 N -0.163 5.163 22 C -0.022 4.022 23 C -0.173 4.173 24 C -0.165 4.165 25 C -0.072 4.072 26 C -0.163 4.163 27 C -0.008 4.008 28 H 0.076 0.924 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.220 0.780 32 H 0.077 0.923 33 H 0.116 0.884 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.117 0.883 44 H 0.112 0.888 45 H 0.104 0.896 46 H 0.090 0.910 47 H 0.083 0.917 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 17.818 -26.061 2.566 31.674 hybrid contribution 1.516 0.318 -1.100 1.900 sum 19.334 -25.743 1.466 32.228 Atomic orbital electron populations 1.69974 1.06062 1.27327 1.48877 1.24940 0.94917 0.99354 0.94805 0.86479 0.79408 0.82392 0.78632 1.20133 1.21095 1.20077 1.21171 0.93157 0.90470 1.53182 0.92102 1.18983 0.87814 0.81075 0.97615 1.45880 1.10809 1.04453 1.77173 1.16043 0.84759 0.81050 0.78167 1.90860 1.14403 1.83821 1.58566 1.47294 1.05096 1.06034 1.79440 1.21293 1.01075 0.80766 0.95766 1.21979 0.92278 1.01297 1.00648 1.19609 0.95820 0.95590 0.90464 1.24685 0.94792 0.90559 0.97722 1.74533 1.19188 1.20677 0.98291 1.74102 1.08131 1.04608 1.26183 1.24663 1.02762 1.01662 0.80844 1.46006 1.34857 1.26996 1.08392 1.22043 0.96899 0.96301 0.86918 1.21931 0.96506 0.99670 0.99211 1.21710 1.03201 0.97795 0.93745 1.20206 0.96595 0.91610 0.98816 1.21957 1.00658 0.93242 1.00412 1.21529 0.81122 1.01271 0.96872 0.92435 0.95661 0.95794 0.77991 0.92303 0.88389 0.91048 0.89839 0.89730 0.89166 0.88561 0.88860 0.90412 0.90968 0.89590 0.88274 0.88836 0.89644 0.90955 0.91725 0.89476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.54 -14.97 9.28 -34.44 -0.32 -15.29 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.27 7.28 5.43 -5.20 -0.03 7.26 16 10 N -0.73 -16.11 5.46 -66.41 -0.36 -16.48 16 11 C 0.70 14.88 8.30 -86.91 -0.72 14.16 16 12 O -0.60 -15.22 15.79 5.29 0.08 -15.14 16 13 N -0.64 -9.92 2.97 -178.50 -0.53 -10.45 16 14 C 0.13 1.74 6.41 -3.71 -0.02 1.72 16 15 C -0.12 -1.39 5.34 -26.61 -0.14 -1.53 16 16 C 0.01 0.06 2.54 -91.73 -0.23 -0.17 16 17 C 0.19 2.20 6.57 -155.45 -1.02 1.17 16 18 N -0.29 -4.39 12.23 32.70 0.40 -3.99 16 19 N -0.29 -4.24 12.21 32.75 0.40 -3.84 16 20 C 0.17 1.73 7.75 -155.31 -1.20 0.53 16 21 N -0.47 -4.23 3.11 -110.86 -0.35 -4.58 16 22 C 0.10 0.45 6.50 -4.00 -0.03 0.42 16 23 C -0.14 -0.36 5.94 -26.49 -0.16 -0.52 16 24 C -0.13 -0.38 5.96 -26.41 -0.16 -0.54 16 25 C -0.03 -0.19 6.34 -27.59 -0.17 -0.36 16 26 C -0.12 -1.33 5.34 -26.61 -0.14 -1.47 16 27 C 0.12 1.36 6.43 -3.71 -0.02 1.33 16 28 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.39 7.33 5.78 -40.82 -0.24 7.09 16 32 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 33 H 0.10 1.49 7.04 -51.93 -0.37 1.13 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.08 0.61 7.44 -51.93 -0.39 0.22 16 37 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.10 0.31 7.92 -51.93 -0.41 -0.10 16 39 H 0.09 0.07 8.14 -51.93 -0.42 -0.36 16 40 H 0.08 0.24 8.12 -51.93 -0.42 -0.18 16 41 H 0.07 0.24 8.12 -51.93 -0.42 -0.18 16 42 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 43 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.09 1.06 5.56 -51.93 -0.29 0.77 16 LS Contribution 381.24 15.07 5.75 5.75 Total: -1.00 -37.67 381.24 -10.93 -48.60 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -7.56 Total: 1.33 kcal Atomic # 6 Polarization: 12.88 SS G_CDS: -4.47 Total: 8.41 kcal Atomic # 7 Polarization: -65.39 SS G_CDS: 0.30 Total: -65.09 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: 0.08 Total: -15.14 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.67 -10.93 -48.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426424989.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.333 kcal (2) G-P(sol) polarization free energy of solvation -37.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds