Wall clock time and date at job start Tue Mar 31 2020 18:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99742 * 2 1 4 4 H 1.48504 * 109.47141 * 239.99528 * 3 2 1 5 5 H 1.48496 * 109.47568 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46931 * 119.99935 * 3 2 1 7 7 C 1.37872 * 119.99592 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99324 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00381 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47177 * 180.02562 * 9 7 2 11 11 C 1.34773 * 119.99971 * 179.97438 * 10 9 7 12 12 O 1.21590 * 120.00164 * 5.07484 * 11 10 9 13 13 N 1.34785 * 120.00117 * 185.06956 * 11 10 9 14 14 C 1.46924 * 120.63023 * 174.96052 * 13 11 10 15 15 C 1.53191 * 108.77744 * 233.58752 * 14 13 11 16 16 C 1.53041 * 109.31224 * 305.37100 * 15 14 13 17 17 C 1.50703 * 109.45916 * 181.38505 * 16 15 14 18 18 N 1.30838 * 126.46400 * 300.08748 * 17 16 15 19 19 N 1.28904 * 109.73640 * 180.22841 * 18 17 16 20 20 C 1.29830 * 109.48629 * 359.74598 * 19 18 17 21 21 N 1.34691 * 126.46626 * 119.97145 * 17 16 15 22 22 C 1.46258 * 128.84338 * 0.09529 * 21 17 16 23 23 C 1.53326 * 108.72757 * 162.64747 * 22 21 17 24 24 C 1.53138 * 109.57570 * 50.30050 * 23 22 21 25 25 C 1.50797 * 128.53075 * 180.14369 * 20 19 18 26 26 C 1.53042 * 109.52963 * 61.36662 * 16 15 14 27 27 C 1.46928 * 120.62771 * 354.94323 * 13 11 10 28 28 H 0.97008 * 119.99971 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47235 * 59.99568 * 9 7 2 30 30 H 1.09005 * 109.46702 * 299.99876 * 9 7 2 31 31 H 0.97000 * 120.00176 * 359.97438 * 10 9 7 32 32 H 1.09008 * 109.58424 * 113.79826 * 14 13 11 33 33 H 1.09005 * 109.70381 * 353.44939 * 14 13 11 34 34 H 1.08998 * 109.49835 * 185.41802 * 15 14 13 35 35 H 1.09001 * 109.52119 * 65.33636 * 15 14 13 36 36 H 1.09007 * 109.45987 * 301.35520 * 16 15 14 37 37 H 1.09003 * 109.59987 * 282.42307 * 22 21 17 38 38 H 1.09001 * 109.59478 * 42.87627 * 22 21 17 39 39 H 1.09001 * 109.45188 * 170.32929 * 23 22 21 40 40 H 1.08993 * 109.45420 * 290.26650 * 23 22 21 41 41 H 1.08995 * 109.50574 * 50.51010 * 24 23 22 42 42 H 1.08999 * 109.49852 * 170.61986 * 24 23 22 43 43 H 1.09000 * 109.73147 * 44.40521 * 25 20 19 44 44 H 1.09000 * 109.73310 * 283.72368 * 25 20 19 45 45 H 1.08999 * 109.49315 * 58.58392 * 26 16 15 46 46 H 1.08998 * 109.49536 * 178.67218 * 26 16 15 47 47 H 1.08997 * 109.58283 * 246.19895 * 27 13 11 48 48 H 1.08996 * 109.58612 * 6.48318 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0018 11 6 1.7537 -4.8833 0.0025 12 8 0.5622 -5.1069 -0.0910 13 7 2.6252 -5.9062 0.1068 14 6 2.1450 -7.2901 0.2199 15 6 2.7777 -7.9320 1.4586 16 6 4.3001 -7.7996 1.3755 17 6 4.9278 -8.4600 2.5759 18 7 4.7292 -8.1438 3.8299 19 7 5.4312 -8.9133 4.5893 20 6 6.0995 -9.7517 3.8571 21 7 5.7973 -9.4885 2.5605 22 6 6.3446 -10.2099 1.4119 23 6 7.5903 -10.9815 1.8631 24 6 7.2635 -11.7940 3.1194 25 6 7.0474 -10.8376 4.3001 26 6 4.6842 -6.3184 1.3493 27 6 4.0734 -5.6584 0.1092 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5570 -0.8896 30 1 0.6240 -2.5566 0.8904 31 1 3.1566 -3.4354 0.0021 32 1 2.4330 -7.8506 -0.6696 33 1 1.0595 -7.2955 0.3196 34 1 2.5060 -8.9867 1.5008 35 1 2.4171 -7.4272 2.3548 36 1 4.6576 -8.2835 0.4665 37 1 5.6000 -10.9087 1.0304 38 1 6.6172 -9.5003 0.6306 39 1 7.9079 -11.6554 1.0675 40 1 8.3928 -10.2779 2.0844 41 1 6.3568 -12.3751 2.9513 42 1 8.0913 -12.4668 3.3431 43 1 6.6165 -11.3819 5.1404 44 1 7.9995 -10.3970 4.5957 45 1 4.3054 -5.8285 2.2463 46 1 5.7696 -6.2246 1.3139 47 1 4.5186 -6.0858 -0.7892 48 1 4.2604 -4.5849 0.1345 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426424989.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:32 Heat of formation + Delta-G solvation = 14.102750 kcal Electronic energy + Delta-G solvation = -28780.233955 eV Core-core repulsion = 24869.829087 eV Total energy + Delta-G solvation = -3910.404869 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.34028 -41.33726 -38.79629 -38.11613 -36.20859 -35.29323 -34.42492 -33.62442 -32.10870 -31.65980 -29.99146 -29.08591 -26.63914 -25.36270 -24.85258 -24.11221 -23.69557 -23.05392 -21.44287 -20.62721 -20.37664 -19.47890 -18.11940 -17.87402 -17.48261 -17.26376 -16.57685 -16.52786 -16.03326 -15.63982 -15.42418 -15.32995 -15.16415 -15.05304 -14.80383 -14.77579 -14.55135 -14.30439 -14.00342 -13.66375 -13.39868 -13.18625 -12.94861 -12.87547 -12.67233 -12.41249 -12.31654 -12.17844 -12.12144 -12.07103 -11.90531 -11.78504 -11.75332 -11.48834 -11.23371 -11.11926 -10.97321 -10.78553 -10.04699 -10.03483 -9.38868 -8.27416 -6.44163 0.82523 1.43007 1.48100 1.52949 1.55885 1.78344 1.81993 2.23353 2.39234 3.07013 3.09374 3.18129 3.36647 3.55568 3.60639 3.72587 3.80502 3.82342 3.99379 4.04604 4.28658 4.30521 4.31768 4.38512 4.41160 4.53205 4.58575 4.71493 4.72878 4.80022 4.82680 4.84734 4.89431 4.95509 5.05768 5.09467 5.09692 5.10665 5.23403 5.27487 5.28291 5.36185 5.48173 5.59837 5.74255 5.85680 5.99436 6.11543 6.66873 7.19050 7.25868 7.70908 7.74832 8.84756 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.021400 B = 0.002255 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.089522 B =12411.793584 C =12910.812845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.987 3.013 4 H -0.259 1.259 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.555 4.555 8 H 0.083 0.917 9 C 0.286 3.714 10 N -0.725 5.725 11 C 0.692 3.308 12 O -0.648 6.648 13 N -0.629 5.629 14 C 0.133 3.867 15 C -0.112 4.112 16 C 0.015 3.985 17 C 0.189 3.811 18 N -0.345 5.345 19 N -0.349 5.349 20 C 0.176 3.824 21 N -0.464 5.464 22 C 0.087 3.913 23 C -0.131 4.131 24 C -0.121 4.121 25 C -0.036 4.036 26 C -0.116 4.116 27 C 0.113 3.887 28 H 0.269 0.731 29 H -0.013 1.013 30 H -0.019 1.019 31 H 0.402 0.598 32 H 0.102 0.898 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.043 0.957 36 H 0.130 0.870 37 H 0.107 0.893 38 H 0.116 0.884 39 H 0.122 0.878 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.109 0.891 43 H 0.100 0.900 44 H 0.104 0.896 45 H 0.047 0.953 46 H 0.097 0.903 47 H 0.109 0.891 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.712 -28.626 -0.543 37.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.184 1.184 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.593 4.593 8 H 0.101 0.899 9 C 0.162 3.838 10 N -0.381 5.381 11 C 0.394 3.606 12 O -0.531 6.531 13 N -0.367 5.367 14 C 0.010 3.990 15 C -0.152 4.152 16 C -0.006 4.006 17 C -0.080 4.080 18 N -0.184 5.184 19 N -0.188 5.188 20 C -0.093 4.093 21 N -0.155 5.155 22 C -0.034 4.034 23 C -0.169 4.169 24 C -0.159 4.159 25 C -0.075 4.075 26 C -0.155 4.155 27 C -0.010 4.010 28 H 0.078 0.922 29 H 0.005 0.995 30 H -0.001 1.001 31 H 0.240 0.760 32 H 0.120 0.880 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.062 0.938 36 H 0.148 0.852 37 H 0.125 0.875 38 H 0.134 0.866 39 H 0.140 0.860 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.127 0.873 43 H 0.118 0.882 44 H 0.122 0.878 45 H 0.066 0.934 46 H 0.116 0.884 47 H 0.127 0.873 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 22.170 -27.950 0.606 35.680 hybrid contribution 0.212 0.723 -0.459 0.882 sum 22.382 -27.228 0.147 35.247 Atomic orbital electron populations 1.70148 1.08275 1.28610 1.49840 1.26087 0.95817 1.03910 0.93859 0.85185 0.77896 0.76481 0.79502 1.18376 1.21046 1.18849 1.21542 0.94218 0.90453 1.53048 0.89931 1.18395 0.88134 0.83449 0.93795 1.45480 1.10846 1.03953 1.77801 1.16261 0.84805 0.81708 0.77846 1.90818 1.17026 1.84646 1.60636 1.47337 1.06267 1.05585 1.77477 1.21507 0.99608 0.79590 0.98256 1.21832 0.93651 1.01707 0.97961 1.19641 0.94220 0.95112 0.91623 1.24794 0.95072 0.91135 0.97003 1.74406 1.21083 1.22597 1.00328 1.73980 1.10262 1.06603 1.27948 1.25431 1.01665 1.00991 0.81236 1.46250 1.33828 1.26178 1.09209 1.22569 0.98040 0.96974 0.85772 1.21974 0.95418 0.99767 0.99722 1.21727 1.04083 0.97339 0.92743 1.20485 0.95818 0.90951 1.00251 1.21856 1.01856 0.93597 0.98180 1.21861 0.78395 1.01558 0.99147 0.92246 0.99513 1.00127 0.75986 0.88023 0.91452 0.88997 0.93826 0.85233 0.87478 0.86568 0.85991 0.90756 0.91118 0.87271 0.88193 0.87811 0.93444 0.88441 0.87258 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.55 13.29 21.45 0.28 -57.26 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.99 43.26 29.54 68.60 2.03 45.28 16 4 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 7 C -0.55 -31.17 9.28 25.60 0.24 -30.93 16 8 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 9 C 0.29 16.51 5.43 85.63 0.47 16.97 16 10 N -0.72 -33.12 5.46 -482.30 -2.63 -35.75 16 11 C 0.69 30.57 8.30 179.05 1.49 32.06 16 12 O -0.65 -35.05 15.79 -4.00 -0.06 -35.11 16 13 N -0.63 -19.15 2.97 -836.90 -2.49 -21.64 16 14 C 0.13 3.30 6.41 86.36 0.55 3.85 16 15 C -0.11 -2.45 5.34 30.67 0.16 -2.28 16 16 C 0.01 0.25 2.54 -11.51 -0.03 0.22 16 17 C 0.19 4.15 6.57 138.14 0.91 5.05 16 18 N -0.35 -10.92 12.23 -50.46 -0.62 -11.53 16 19 N -0.35 -10.51 12.21 -50.28 -0.61 -11.12 16 20 C 0.18 3.46 7.75 138.14 1.07 4.53 16 21 N -0.46 -7.23 3.11 -504.64 -1.57 -8.80 16 22 C 0.09 0.38 6.50 86.53 0.56 0.94 16 23 C -0.13 -0.10 5.94 30.75 0.18 0.08 16 24 C -0.12 -0.30 5.96 30.80 0.18 -0.11 16 25 C -0.04 -0.34 6.34 30.04 0.19 -0.15 16 26 C -0.12 -2.28 5.34 30.67 0.16 -2.12 16 27 C 0.11 2.34 6.43 86.36 0.56 2.90 16 28 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 29 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 30 H -0.02 -1.26 8.14 -2.38 -0.02 -1.28 16 31 H 0.40 15.30 5.78 -92.71 -0.54 14.77 16 32 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.07 2.12 7.04 -2.38 -0.02 2.10 16 34 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.13 1.11 7.44 -2.38 -0.02 1.09 16 37 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 38 H 0.12 0.09 7.92 -2.39 -0.02 0.07 16 39 H 0.12 -0.52 8.14 -2.39 -0.02 -0.54 16 40 H 0.07 0.16 8.12 -2.39 -0.02 0.14 16 41 H 0.07 0.23 8.12 -2.39 -0.02 0.21 16 42 H 0.11 -0.18 8.14 -2.39 -0.02 -0.20 16 43 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.08 1.80 5.56 -2.39 -0.01 1.79 16 Total: -1.00 -91.32 381.24 1.91 -89.41 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.43 Total: 14.88 kcal Atomic # 6 Polarization: 24.49 SS G_CDS: 7.16 Total: 31.64 kcal Atomic # 7 Polarization: -138.47 SS G_CDS: -7.64 Total: -146.11 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -0.06 Total: -35.11 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -91.32 1.91 -89.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426424989.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.511 kcal (2) G-P(sol) polarization free energy of solvation -91.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds