Wall clock time and date at job start Tue Mar 31 2020 17:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47394 * 2 1 4 4 C 1.50704 * 109.47058 * 240.00003 * 2 1 3 5 5 H 1.07999 * 119.99742 * 240.00678 * 4 2 1 6 6 C 1.37874 * 119.99855 * 60.00080 * 4 2 1 7 7 N 1.31518 * 120.00249 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99605 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46931 * 269.99885 * 8 6 4 10 10 H 1.48497 * 109.47311 * 30.00008 * 8 6 4 11 11 H 1.48498 * 109.47002 * 150.00523 * 8 6 4 12 12 N 1.46503 * 109.46630 * 120.00115 * 2 1 3 13 13 C 1.46497 * 120.00100 * 60.00292 * 12 2 1 14 14 S 1.65597 * 119.99819 * 239.99769 * 12 2 1 15 15 O 1.42101 * 106.40326 * 203.54248 * 14 12 2 16 16 O 1.42109 * 106.40229 * 336.45921 * 14 12 2 17 17 N 1.65596 * 107.21795 * 90.00141 * 14 12 2 18 18 C 1.46495 * 120.00043 * 65.00129 * 17 14 12 19 19 C 1.53001 * 109.47414 * 164.99655 * 18 17 14 20 20 N 1.46899 * 109.47239 * 179.97438 * 19 18 17 21 21 C 1.47846 * 111.00426 * 292.96612 * 20 19 18 22 22 C 1.54910 * 104.79697 * 213.63652 * 21 20 19 23 23 C 1.55140 * 101.65016 * 37.06803 * 22 21 20 24 24 C 1.47443 * 110.99832 * 172.11825 * 20 19 18 25 25 C 1.53004 * 109.88936 * 242.66397 * 24 20 19 26 26 C 1.52997 * 109.88928 * 3.85571 * 24 20 19 27 27 H 1.08998 * 109.46927 * 299.99991 * 1 2 3 28 28 H 1.09002 * 109.46775 * 59.99842 * 1 2 3 29 29 H 1.08994 * 109.47454 * 179.97438 * 1 2 3 30 30 H 0.96999 * 119.99937 * 179.97438 * 7 6 4 31 31 H 1.08995 * 109.47669 * 89.99196 * 13 12 2 32 32 H 1.09001 * 109.46952 * 209.99750 * 13 12 2 33 33 H 1.09007 * 109.47060 * 329.99330 * 13 12 2 34 34 H 0.97003 * 120.00100 * 245.00034 * 17 14 12 35 35 H 1.08999 * 109.47418 * 285.00167 * 18 17 14 36 36 H 1.09011 * 109.47418 * 44.99709 * 18 17 14 37 37 H 1.08994 * 109.47571 * 299.99948 * 19 18 17 38 38 H 1.08997 * 109.46855 * 60.00236 * 19 18 17 39 39 H 1.09006 * 110.36939 * 332.46175 * 21 20 19 40 40 H 1.08993 * 110.37290 * 94.80441 * 21 20 19 41 41 H 1.08994 * 110.99052 * 278.97860 * 22 21 20 42 42 H 1.09004 * 111.02050 * 155.17246 * 22 21 20 43 43 H 1.09006 * 110.70106 * 205.96347 * 23 22 21 44 44 H 1.09001 * 110.85790 * 82.79976 * 23 22 21 45 45 H 1.08997 * 109.46712 * 60.00117 * 25 24 20 46 46 H 1.09001 * 109.46801 * 180.02562 * 25 24 20 47 47 H 1.08998 * 109.47132 * 300.00273 * 25 24 20 48 48 H 1.09004 * 109.47091 * 54.60923 * 26 24 20 49 49 H 1.09000 * 109.47058 * 174.60435 * 26 24 20 50 50 H 1.08997 * 109.46960 * 294.60942 * 26 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.6298 -0.5460 -4.4123 10 1 2.4858 -2.5663 -3.7119 11 1 1.3432 -0.9492 -5.1120 12 7 2.0183 -0.6907 1.1962 13 6 1.6644 -2.0932 1.4280 14 16 2.9703 0.1141 2.2863 15 8 3.7117 -0.8790 2.9815 16 8 3.5795 1.1828 1.5748 17 7 1.9606 0.8090 3.3998 18 6 1.1509 -0.0352 4.2816 19 6 0.6086 0.8075 5.4378 20 7 -0.2039 -0.0389 6.3217 21 6 -1.4335 -0.4927 5.6376 22 6 -2.5042 -0.5646 6.7549 23 6 -2.1292 0.6620 7.6276 24 6 -0.5885 0.6901 7.5443 25 6 0.0118 0.0013 8.7716 26 6 -0.0979 2.1370 7.4636 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 0.7096 1.1619 -3.4844 31 1 2.4156 -2.7378 0.9716 32 1 1.6237 -2.2853 2.5002 33 1 0.6903 -2.3002 0.9846 34 1 1.9054 1.7750 3.4681 35 1 0.3187 -0.4567 3.7177 36 1 1.7668 -0.8425 4.6782 37 1 1.4407 1.2289 6.0018 38 1 -0.0074 1.6146 5.0413 39 1 -1.7300 0.2261 4.8737 40 1 -1.2803 -1.4768 5.1950 41 1 -2.4140 -1.4903 7.3231 42 1 -3.5075 -0.4583 6.3423 43 1 -2.4569 0.5170 8.6571 44 1 -2.5542 1.5767 7.2145 45 1 1.0984 -0.0101 8.6866 46 1 -0.2770 0.5452 9.6710 47 1 -0.3588 -1.0220 8.8315 48 1 -0.4691 2.5959 6.5472 49 1 -0.4672 2.6944 8.3245 50 1 0.9920 2.1515 7.4616 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452080136.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:23 Heat of formation + Delta-G solvation = -93.951186 kcal Electronic energy + Delta-G solvation = -28656.019804 eV Core-core repulsion = 24844.080565 eV Total energy + Delta-G solvation = -3811.939239 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.84306 -38.34135 -37.90725 -36.89596 -36.69004 -34.52675 -33.32961 -32.98274 -30.91403 -28.48368 -27.93224 -27.28886 -26.98034 -26.06914 -23.67137 -22.59873 -21.87151 -20.44196 -19.56267 -18.75550 -18.57275 -18.14398 -17.38389 -16.92992 -16.61561 -16.49097 -16.13430 -15.72662 -15.18563 -15.12085 -14.77343 -14.57857 -14.47164 -14.17339 -13.80780 -13.76268 -13.48280 -13.40142 -13.21214 -13.15922 -13.11531 -12.98506 -12.95263 -12.81267 -12.59648 -12.57052 -12.34010 -12.24796 -12.15751 -12.04197 -11.99992 -11.85235 -11.80430 -11.46836 -11.39123 -11.14977 -10.52113 -10.45072 -9.67714 -9.25737 -8.11900 -6.25173 -0.32974 1.42161 1.44355 1.53325 2.01096 2.43232 2.60944 2.99046 3.16541 3.44404 3.66219 3.75332 3.91739 4.02910 4.08013 4.11277 4.32258 4.33451 4.48759 4.50678 4.60043 4.66539 4.68254 4.74792 4.81862 4.83296 4.88293 4.97739 4.98645 5.00493 5.03229 5.06577 5.09584 5.13137 5.15395 5.18727 5.24670 5.26848 5.35334 5.53593 5.61560 5.70701 5.87693 6.02924 6.11478 6.15695 6.21647 6.30759 6.82416 7.43787 8.92311 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019839 B = 0.003037 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.043883 B = 9216.896014 C = 9793.280285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.273 3.727 3 H 0.025 0.975 4 C -0.539 4.539 5 H 0.056 0.944 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 0.954 3.046 9 H -0.283 1.283 10 H -0.267 1.267 11 H -0.278 1.278 12 N -0.996 5.996 13 C 0.103 3.897 14 S 2.798 3.202 15 O -1.009 7.009 16 O -1.017 7.017 17 N -1.118 6.118 18 C 0.121 3.879 19 C 0.050 3.950 20 N -0.528 5.528 21 C 0.032 3.968 22 C -0.125 4.125 23 C -0.130 4.130 24 C 0.089 3.911 25 C -0.124 4.124 26 C -0.165 4.165 27 H 0.035 0.965 28 H 0.066 0.934 29 H 0.044 0.956 30 H 0.264 0.736 31 H 0.040 0.960 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.421 0.579 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.050 0.950 39 H 0.045 0.955 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.068 0.932 45 H 0.048 0.952 46 H 0.068 0.932 47 H 0.055 0.945 48 H 0.055 0.945 49 H 0.072 0.928 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.039 -0.512 22.086 23.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.169 3.831 3 H 0.043 0.957 4 C -0.578 4.578 5 H 0.074 0.926 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.780 3.220 9 H -0.209 1.209 10 H -0.191 1.191 11 H -0.203 1.203 12 N -0.838 5.838 13 C -0.042 4.042 14 S 2.807 3.193 15 O -0.992 6.992 16 O -1.001 7.001 17 N -0.881 5.881 18 C -0.005 4.005 19 C -0.080 4.080 20 N -0.253 5.253 21 C -0.095 4.095 22 C -0.163 4.163 23 C -0.168 4.168 24 C 0.000 4.000 25 C -0.181 4.181 26 C -0.223 4.223 27 H 0.054 0.946 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.256 0.744 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.104 0.896 44 H 0.087 0.913 45 H 0.067 0.933 46 H 0.087 0.913 47 H 0.074 0.926 48 H 0.074 0.926 49 H 0.090 0.910 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.837 -1.001 22.078 23.448 hybrid contribution -0.342 0.855 -1.478 1.741 sum -8.178 -0.146 20.599 22.164 Atomic orbital electron populations 1.21897 0.96742 1.00253 1.00433 1.18404 0.92298 0.91308 0.81117 0.95720 1.21667 1.31609 1.13032 0.91539 0.92606 1.25625 0.95206 0.95736 1.01617 1.69972 1.37302 1.23682 1.24340 0.85614 0.77945 0.79212 0.79213 1.20898 1.19121 1.20349 1.57558 1.70001 1.21021 1.35241 1.21352 1.01752 0.80398 1.00730 1.01154 0.73545 0.72320 0.72269 1.93516 1.69843 1.61272 1.74596 1.93553 1.75844 1.57411 1.73290 1.55701 1.62296 1.18031 1.52084 1.21282 0.94777 0.93414 0.91066 1.22438 0.98162 0.94269 0.93090 1.63507 1.18569 1.37860 1.05376 1.23197 0.88980 1.00847 0.96523 1.22671 0.98457 0.98792 0.96390 1.22871 0.93943 0.98464 1.01521 1.21864 0.94837 0.92479 0.90853 1.21720 1.00435 1.00455 0.95537 1.22389 1.01733 0.95599 1.02535 0.94627 0.91546 0.93744 0.92633 0.94082 0.90383 0.90226 0.74399 0.91394 0.90523 0.89327 0.93149 0.93633 0.90156 0.90473 0.89964 0.89570 0.91298 0.93308 0.91294 0.92595 0.92554 0.90953 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.92 8.95 71.98 0.64 -5.27 16 2 C 0.27 13.42 2.62 44.25 0.12 13.53 16 3 H 0.03 1.39 6.91 -2.39 -0.02 1.37 16 4 C -0.54 -29.36 8.37 25.60 0.21 -29.15 16 5 H 0.06 3.04 7.65 -2.91 -0.02 3.01 16 6 C 0.02 0.98 5.30 84.65 0.45 1.43 16 7 N -0.91 -51.34 11.32 21.45 0.24 -51.10 16 8 Si 0.95 43.48 29.54 68.60 2.03 45.51 16 9 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 N -1.00 -40.93 3.12 -520.43 -1.62 -42.55 16 13 C 0.10 3.56 9.53 127.77 1.22 4.78 16 14 S 2.80 109.62 6.09 -56.49 -0.34 109.28 16 15 O -1.01 -41.85 16.68 -128.00 -2.14 -43.99 16 16 O -1.02 -48.49 16.70 -128.00 -2.14 -50.63 16 17 N -1.12 -31.72 6.05 -187.49 -1.14 -32.85 16 18 C 0.12 2.89 6.26 86.38 0.54 3.43 16 19 C 0.05 0.96 3.81 86.30 0.33 1.29 16 20 N -0.53 -9.52 4.81 -836.51 -4.02 -13.54 16 21 C 0.03 0.53 5.68 86.77 0.49 1.03 16 22 C -0.13 -1.62 7.08 31.98 0.23 -1.40 16 23 C -0.13 -1.58 6.01 31.78 0.19 -1.39 16 24 C 0.09 1.30 1.15 3.87 0.00 1.30 16 25 C -0.12 -1.70 8.71 71.98 0.63 -1.08 16 26 C -0.16 -2.23 7.14 71.98 0.51 -1.71 16 27 H 0.03 1.34 8.14 -2.39 -0.02 1.33 16 28 H 0.07 3.32 6.07 -2.39 -0.01 3.31 16 29 H 0.04 1.83 6.66 -2.39 -0.02 1.81 16 30 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 31 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.08 2.20 7.79 -2.39 -0.02 2.18 16 33 H 0.08 2.60 6.43 -2.38 -0.02 2.59 16 34 H 0.42 10.33 8.65 -96.74 -0.84 9.49 16 35 H 0.07 1.57 7.42 -2.39 -0.02 1.55 16 36 H 0.08 1.96 7.75 -2.38 -0.02 1.94 16 37 H 0.09 1.65 6.32 -2.39 -0.02 1.64 16 38 H 0.05 0.92 6.64 -2.39 -0.02 0.91 16 39 H 0.05 0.80 7.66 -2.38 -0.02 0.78 16 40 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.09 0.86 7.83 -2.38 -0.02 0.84 16 44 H 0.07 0.84 7.85 -2.39 -0.02 0.82 16 45 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.06 0.80 6.61 -2.38 -0.02 0.79 16 49 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.06 0.88 6.71 -2.39 -0.02 0.86 16 Total: -1.00 -68.16 392.80 -3.48 -71.64 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.08 Total: 21.43 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: 5.57 Total: -13.21 kcal Atomic # 7 Polarization: -133.51 SS G_CDS: -6.54 Total: -140.04 kcal Atomic # 8 Polarization: -90.34 SS G_CDS: -4.27 Total: -94.62 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: 109.62 SS G_CDS: -0.34 Total: 109.28 kcal Total: -68.16 -3.48 -71.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452080136.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.311 kcal (2) G-P(sol) polarization free energy of solvation -68.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds